RchiOBHm_Chr7g0207411
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24774176 .. 24777855
3680 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18560

Sequence Viewer

Length: 1158 bp
ATGGAAAAGCTCAAATTCAAATCCAAGAACAAACAGAAGGAGTTAAAATCAGCTCCGGATTTGAGAAACAAAAGCGACTCCTTAACTCCGGTATTAGACCGTGCCTCGAAATCTCTACCTTCACCAAGAAGCATACCAGAATTGTACAAAGAGAAGGAGCAGAATTTGAAGGTTTTCTCACTCCAAGAGCTCAGGGATTCAACCAATGGCTTCAGCAGGTTGCAAAAGCTTGGGGAAGGGGGATTTGGGAGTGTGTATAAAGGAATAATCAAGCCCAAAAATGGCAAGGGTAGTCCAATTTTGGTTGCCATAAAAAAGTTGAATCCACATAGCTTACAGGGTCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTGTAGATGGGGAAAGAGGGATCCAACGGCTATTGGTATACGAATATATGCCTAATAGGAGCTTAGAGGATCATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACATGAGGGACTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCAGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCAGTGGTAGGGACTTATGGATATGCTGCCCCAGAGTATGTCGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTGTTGTATGAGATCCTCACTGGGAGGCGTGTCTTAGAAAGACACCGGCCAACAGCGGAGCAGAAGCTTCTTTATTGGGCTAGACAGTACCCTGCAGACAGTAAAAAATTCAGCATGATAATAGATCCGCTTCTAAGAGACCAGTATTCTATTAATGCAGCTCGAAAAATTGCCAAGTTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGACCGGCCAACAATGAATCAGGTGGTAGAGATCTTGAAGCAAGCTATACAAGATTCACAAAAGGGTACCAACTCTGTAAATAACAATTTTGGGGCATCTGGGTCTAAATTGGGTAAAAAGAACCCCAAGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

385

Amino Acids

43.47

Weight (kDa)

9.73

Isoelectric Point (pI)

29.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 72 - 350 8.7e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 74 - 352 1.7e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 207
Acc65I GGTACC 1 cut(s) 1085
AccB1I GGYRCC 1 cut(s) 1085
AccI GTMKAC 1 cut(s) 459
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 2 cut(s) 866, 938
AclWI GGATC 6 cut(s) 436, 449, 498, 536, 817, 929
AcoI YGGCCR 2 cut(s) 857, 1025
AcsI RAATTY 3 cut(s) 14, 163, 917
AcuI CTGAAG 2 cut(s) 196, 655
AfaI GTAC 4 cut(s) 146, 706, 899, 1087
AfiI CCNNNNNNNGG 3 cut(s) 281, 397, 1152
AgsI TTSAA 9 cut(s) 19, 169, 201, 322, 368, 502, 514, 619, 1057
AhdI GACNNNNNGTC 1 cut(s) 593
AjnI CCWGG 1 cut(s) 597
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
Alw21I GWGCWC 2 cut(s) 192, 636
Alw26I GTCTC 1 cut(s) 942
AlwI GGATC 6 cut(s) 436, 449, 498, 536, 817, 929
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 4 cut(s) 689, 769, 857, 1025
ApeKI GCWGC 4 cut(s) 557, 746, 968, 999
ApoI RAATTY 3 cut(s) 14, 163, 917
AseI ATTAAT 1 cut(s) 963
Asp700I GAANNNNTTC 1 cut(s) 173
Asp718I GGTACC 1 cut(s) 1085
AspS9I GGNCC 1 cut(s) 689
AsuHPI GGTGA 4 cut(s) 114, 380, 613, 710
BaeI ACNNNNGTAYC 2 cut(s) 696, 729
BamHI GGATCC 1 cut(s) 441
BanI GGYRCC 1 cut(s) 1085
BanII GRGCYC 1 cut(s) 192
BauI CACGAG 1 cut(s) 532
Bbv12I GWGCWC 2 cut(s) 192, 636
BbvI GCAGC 4 cut(s) 544, 733, 980, 986
BccI CCATC 3 cut(s) 422, 780, 788
BceAI ACGGC 1 cut(s) 464
BciT130I CCWGG 1 cut(s) 599
BcoDI GTCTC 1 cut(s) 942
BfaI CTAG 3 cut(s) 410, 681, 891
BfmI CTRYAG 2 cut(s) 423, 903
BfuAI ACCTGC 1 cut(s) 207
BglI GCCNNNNNGGC 1 cut(s) 989
BglII AGATCT 1 cut(s) 1050
BisI GCNGC 4 cut(s) 558, 747, 969, 1000
BlsI GCNGC 4 cut(s) 559, 748, 970, 1001
Bme1390I CCNGG 1 cut(s) 599
BmeRI GACNNNNNGTC 1 cut(s) 593
BmgT120I GGNCC 1 cut(s) 689
BmiI GGNNCC 2 cut(s) 443, 1087
BmrFI CCNGG 1 cut(s) 599
BmrI ACTGGG 1 cut(s) 840
BmsI GCATC 1 cut(s) 1124
BmuI ACTGGG 1 cut(s) 840
Bpu10I CCTNAGC 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 546
BsaI GGTCTC 1 cut(s) 942
BsaJI CCNNGG 1 cut(s) 524
BsaWI WCCGGW 2 cut(s) 55, 88
BsaXI ACNNNNNCTCC 2 cut(s) 790, 820
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 397, 1152
Bse118I RCCGGY 2 cut(s) 855, 1023
Bse1I ACTGG 3 cut(s) 594, 835, 952
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 1 cut(s) 599
BseDI CCNNGG 1 cut(s) 524
BseGI GGATG 2 cut(s) 646, 780
BseLI CCNNNNNNNGG 3 cut(s) 281, 397, 1152
BseMII CTCAG 2 cut(s) 205, 678
BseNI ACTGG 3 cut(s) 594, 835, 952
BseXI GCAGC 4 cut(s) 544, 733, 980, 986
BshFI GGCC 4 cut(s) 691, 771, 859, 1027
BshNI GGYRCC 1 cut(s) 1085
BsiHKAI GWGCWC 2 cut(s) 192, 636
BsiSI CCGG 4 cut(s) 56, 89, 856, 1024
BslFI GGGAC 2 cut(s) 600, 745
BslI CCNNNNNNNGG 3 cut(s) 281, 397, 1152
BsmAI GTCTC 1 cut(s) 942
BsmFI GGGAC 2 cut(s) 600, 745
BsmI GAATGC 1 cut(s) 1018
BsnI GGCC 4 cut(s) 691, 771, 859, 1027
Bso31I GGTCTC 1 cut(s) 942
Bsp1286I GDGCHC 2 cut(s) 192, 636
Bsp13I TCCGGA 1 cut(s) 55
Bsp1407I TGTACA 1 cut(s) 144
Bsp143I GATC 6 cut(s) 441, 490, 528, 822, 934, 1050
BspACI CCGC 2 cut(s) 866, 938
BspANI GGCC 4 cut(s) 691, 771, 859, 1027
BspCNI CTCAG 2 cut(s) 204, 677
BspEI TCCGGA 1 cut(s) 55
BspLI GGNNCC 2 cut(s) 443, 1087
BspMAI CTGCAG 1 cut(s) 907
BspMI ACCTGC 1 cut(s) 207
BspPI GGATC 6 cut(s) 436, 449, 498, 536, 817, 929
BspT107I GGYRCC 1 cut(s) 1085
BspTNI GGTCTC 1 cut(s) 942
BsrFI RCCGGY 2 cut(s) 855, 1023
BsrGI TGTACA 1 cut(s) 144
BsrI ACTGG 3 cut(s) 594, 835, 952
BssAI RCCGGY 2 cut(s) 855, 1023
BssECI CCNNGG 1 cut(s) 524
BssMI GATC 6 cut(s) 441, 490, 528, 822, 934, 1050
BssNAI GTATAC 1 cut(s) 460
BssSI CACGAG 1 cut(s) 532
BssT1I CCWWGG 1 cut(s) 524
Bst1107I GTATAC 1 cut(s) 460
Bst2BI CACGAG 1 cut(s) 532
Bst2UI CCWGG 1 cut(s) 599
Bst4CI ACNGT 4 cut(s) 101, 704, 897, 911
Bst6I CTCTTC 1 cut(s) 525
BstAUI TGTACA 1 cut(s) 144
BstC8I GCNNGC 3 cut(s) 357, 678, 1062
BstDEI CTNAG 5 cut(s) 191, 484, 664, 844, 944
BstEII GGTNACC 1 cut(s) 698
BstF5I GGATG 2 cut(s) 646, 780
BstKTI GATC 6 cut(s) 444, 493, 531, 825, 937, 1053
BstMAI GTCTC 1 cut(s) 942
BstMBI GATC 6 cut(s) 441, 490, 528, 822, 934, 1050
BstMWI GCNNNNNNNGC 1 cut(s) 989
BstNI CCWGG 1 cut(s) 599
BstPI GGTNACC 1 cut(s) 698
BstSCI CCNGG 1 cut(s) 597
BstSFI CTRYAG 2 cut(s) 423, 903
BstV1I GCAGC 4 cut(s) 544, 733, 980, 986
BstX2I RGATCY 4 cut(s) 441, 822, 934, 1050
BstYI RGATCY 4 cut(s) 441, 822, 934, 1050
BstZ17I GTATAC 1 cut(s) 460
BsuRI GGCC 4 cut(s) 691, 771, 859, 1027
BtsCI GGATG 2 cut(s) 646, 780
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 2 cut(s) 729, 828
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 3 cut(s) 357, 678, 1062
Cfr10I RCCGGY 2 cut(s) 855, 1023
Cfr13I GGNCC 1 cut(s) 689
Csp6I GTAC 4 cut(s) 145, 705, 898, 1086
CviAII CATG 3 cut(s) 581, 710, 925
CviQI GTAC 4 cut(s) 145, 705, 898, 1086
DdeI CTNAG 5 cut(s) 191, 484, 664, 844, 944
DpnI GATC 6 cut(s) 443, 492, 530, 824, 936, 1052
DpnII GATC 6 cut(s) 441, 490, 528, 822, 934, 1050
DriI GACNNNNNGTC 1 cut(s) 593
EaeI YGGCCR 2 cut(s) 857, 1025
Eam1104I CTCTTC 1 cut(s) 525
Eam1105I GACNNNNNGTC 1 cut(s) 593
EarI CTCTTC 1 cut(s) 525
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 524
Eco24I GRGCYC 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 942
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 2 cut(s) 196, 655
Eco91I GGTNACC 1 cut(s) 698
EcoICRI GAGCTC 1 cut(s) 190
EcoO65I GGTNACC 1 cut(s) 698
EcoRII CCWGG 1 cut(s) 597
EcoT14I CCWWGG 1 cut(s) 524
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 524
FaeI CATG 3 cut(s) 584, 713, 928
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 2 cut(s) 600, 745
FatI CATG 3 cut(s) 580, 709, 924
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 4 cut(s) 558, 747, 969, 1000
FokI GGATG 2 cut(s) 653, 767
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 4 cut(s) 558, 747, 969, 1000
FspBI CTAG 3 cut(s) 410, 681, 891
GluI GCNGC 4 cut(s) 558, 747, 969, 1000
HaeIII GGCC 4 cut(s) 691, 771, 859, 1027
HapII CCGG 4 cut(s) 56, 89, 856, 1024
Hin1II CATG 3 cut(s) 584, 713, 928
HindIII AAGCTT 3 cut(s) 227, 404, 875
HinfI GANTC 5 cut(s) 77, 197, 322, 1036, 1073
HpaII CCGG 4 cut(s) 56, 89, 856, 1024
HphI GGTGA 4 cut(s) 114, 380, 613, 710
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 1 cut(s) 667
Hpy188III TCNNGA 4 cut(s) 56, 532, 611, 1054
Hpy8I GTNNAC 1 cut(s) 460
HpyAV CCTTC 6 cut(s) 31, 129, 148, 163, 230, 680
HpyCH4III ACNGT 4 cut(s) 101, 704, 897, 911
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 5 cut(s) 223, 359, 905, 968, 1016
HpyF10VI GCNNNNNNNGC 1 cut(s) 989
HpyF3I CTNAG 5 cut(s) 191, 484, 664, 844, 944
HpySE526I ACGT 1 cut(s) 630
Hsp92II CATG 3 cut(s) 584, 713, 928
Kpn2I TCCGGA 1 cut(s) 55
KpnI GGTACC 1 cut(s) 1089
Kzo9I GATC 6 cut(s) 441, 490, 528, 822, 934, 1050
LmnI GCTCC 4 cut(s) 58, 157, 480, 868
Lsp1109I GCAGC 4 cut(s) 544, 733, 980, 986
LweI GCATC 1 cut(s) 1124
MaeI CTAG 3 cut(s) 410, 681, 891
MaeII ACGT 1 cut(s) 630
MaeIII GTNAC 3 cut(s) 537, 698, 788
MalI GATC 6 cut(s) 443, 492, 530, 824, 936, 1052
MboI GATC 6 cut(s) 441, 490, 528, 822, 934, 1050
MboII GAAGA 1 cut(s) 512
MflI RGATCY 4 cut(s) 441, 822, 934, 1050
MhlI GDGCHC 2 cut(s) 192, 636
MluCI AATT 9 cut(s) 14, 140, 163, 297, 368, 917, 978, 1105, 1127
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 2 cut(s) 469, 651
MroI TCCGGA 1 cut(s) 55
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 4 cut(s) 44, 83, 651, 963
MspA1I CMGCKG 1 cut(s) 866
MspI CCGG 4 cut(s) 56, 89, 856, 1024
MspR9I CCNGG 1 cut(s) 599
Mva1269I GAATGC 1 cut(s) 1018
MvaI CCWGG 1 cut(s) 599
MwoI GCNNNNNNNGC 1 cut(s) 989
NdeII GATC 6 cut(s) 441, 490, 528, 822, 934, 1050
NlaIII CATG 3 cut(s) 584, 713, 928
NlaIV GGNNCC 2 cut(s) 443, 1087
NmuCI GTSAC 2 cut(s) 698, 788
PctI GAATGC 1 cut(s) 1018
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 4 cut(s) 197, 322, 1036, 1073
PkrI GCNGC 4 cut(s) 559, 748, 970, 1001
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PshBI ATTAAT 1 cut(s) 963
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 597
PspEI GGTNACC 1 cut(s) 698
PspGI CCWGG 1 cut(s) 597
PspN4I GGNNCC 2 cut(s) 443, 1087
PspPI GGNCC 1 cut(s) 689
PstI CTGCAG 1 cut(s) 907
PsuI RGATCY 4 cut(s) 441, 822, 934, 1050
RsaI GTAC 4 cut(s) 146, 706, 899, 1087
RsaNI GTAC 4 cut(s) 145, 705, 898, 1086
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 4 cut(s) 44, 83, 651, 963
SatI GCNGC 4 cut(s) 558, 747, 969, 1000
Sau3AI GATC 6 cut(s) 441, 490, 528, 822, 934, 1050
Sau96I GGNCC 1 cut(s) 689
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 599
SduI GDGCHC 2 cut(s) 192, 636
SfaNI GCATC 1 cut(s) 1124
SfcI CTRYAG 2 cut(s) 423, 903
SmlI CTYRAG 1 cut(s) 561
SmoI CTYRAG 1 cut(s) 561
Sse9I AATT 9 cut(s) 14, 140, 163, 297, 368, 917, 978, 1105, 1127
SsiI CCGC 2 cut(s) 866, 938
SspMI CTAG 3 cut(s) 410, 681, 891
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 597
StyI CCWWGG 1 cut(s) 524
TaaI ACNGT 4 cut(s) 101, 704, 897, 911
TaiI ACGT 1 cut(s) 633
TaqI TCGA 5 cut(s) 107, 610, 716, 762, 973
TasI AATT 9 cut(s) 14, 140, 163, 297, 368, 917, 978, 1105, 1127
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 4 cut(s) 197, 322, 1036, 1073
Tru1I TTAA 4 cut(s) 44, 83, 651, 963
Tru9I TTAA 4 cut(s) 44, 83, 651, 963
TscAI CASTG 2 cut(s) 729, 835
TseFI GTSAC 2 cut(s) 698, 788
TseI GCWGC 4 cut(s) 557, 746, 968, 999
Tsp45I GTSAC 2 cut(s) 698, 788
TspDTI ATGAA 1 cut(s) 1049
TspRI CASTG 2 cut(s) 729, 835
VspI ATTAAT 1 cut(s) 963
XapI RAATTY 3 cut(s) 14, 163, 917
XcmI CCANNNNNNNNNTGG 1 cut(s) 634
XmiI GTMKAC 1 cut(s) 459
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 3 cut(s) 410, 681, 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.