Rmu_sc0004987.1_g000003
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004987.1
OG0000416
Physical Location & Seq
Reverse (-)
30161 .. 34504
4344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004987.1_g000003.1.cds

Sequence Viewer

Length: 1095 bp
atgggatcttgttctgttgtgccaatgactcccagctacctttccagagagtttagctttccttggagcactccttttgcagctgccaggagtctatctccgtgccttaatagcttctctgactaccatttgaggaagaactgtccatactcgggtcataaagaatggcttgcagaggttcaatttcttggtgtggtaaatcacccaaatctggtaaagcttctaggatattgctctgtagatggggaaagagggatccaacggctattggtatatgaatatatgcctaataggagcttagaggatcatcttttcaacagggctttgaaccctcttccttggatcacgaggttacgaataatgcttggtgctgctcaaggattggcttatctacacgagggactggaagtccaggtgatatatcgagatttcaaatcctccaacgtgctcatggatgaggactttaagccgaagctctcagacttcgggcttgctagagaagggccaaagggtgaccgtactcatgtatcggcagcagtggtagggacttatggatatgctgccccagagtatgtcgaaacaggccatctttccatccatagtgacttatggagttttggtgtggtgctgtatgagatcctcactgggaggcgtgtcttagaaaggcaccggccaacaacggagcagaagcttctttattgggttagacagtaccctgcagacagtaaaaagttcagcatgataatagatccactcctaagagaccagtattctattaatgcagctcggaaaattgccaagttggcagatagctgcctgaacaagagtgcaaaagaccggccaacaatgaatcaggtggtagagatcttgaagcaagctatacaagattcacaaaagggggttctggtccaacatgaggatggtttgatcactactgagagagggtgtgtgtactacttgagggggttcgagtacaattggatggttatcatttctaccttctgttttcctgagactgaagctgtgaaagttggagcaaagaatgcagataaagagggggtgaaaggaatgacaaaaggctctatcactcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

364

Amino Acids

41.24

Weight (kDa)

8.53

Isoelectric Point (pI)

31.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 666
AclWI GGATC 7 cut(s) 13, 250, 263, 312, 350, 631, 743
AcoI YGGCCR 2 cut(s) 671, 839
AcuI CTGAAG 1 cut(s) 1038
AfaI GTAC 4 cut(s) 520, 713, 953, 974
AfiI CCNNNNNNNGG 3 cut(s) 152, 211, 916
AgsI TTSAA 5 cut(s) 182, 316, 328, 433, 871
AhdI GACNNNNNGTC 1 cut(s) 407
AjnI CCWGG 2 cut(s) 86, 411
Alw21I GWGCWC 2 cut(s) 71, 450
Alw26I GTCTC 2 cut(s) 756, 1007
AlwI GGATC 7 cut(s) 13, 250, 263, 312, 350, 631, 743
Ama87I CYCGRG 1 cut(s) 151
AoxI GGCC 4 cut(s) 503, 583, 671, 839
ApeKI GCWGC 7 cut(s) 80, 83, 371, 533, 560, 782, 813
AseI ATTAAT 1 cut(s) 777
AspS9I GGNCC 2 cut(s) 503, 907
AsuHPI GGTGA 4 cut(s) 194, 427, 524, 1072
AvaI CYCGRG 1 cut(s) 151
AvaII GGWCC 1 cut(s) 907
BaeI ACNNNNGTAYC 2 cut(s) 510, 543
BamHI GGATCC 1 cut(s) 255
BanI GGYRCC 1 cut(s) 666
BauI CACGAG 2 cut(s) 346, 395
Bbv12I GWGCWC 2 cut(s) 71, 450
BbvI GCAGC 7 cut(s) 70, 92, 358, 545, 547, 794, 800
BccI CCATC 5 cut(s) 236, 594, 602, 914, 976
BceAI ACGGC 1 cut(s) 278
BciT130I CCWGG 2 cut(s) 88, 413
BclI TGATCA 1 cut(s) 927
BcoDI GTCTC 2 cut(s) 756, 1007
BfaI CTAG 2 cut(s) 224, 495
BfmI CTRYAG 2 cut(s) 237, 717
BglI GCCNNNNNGGC 1 cut(s) 803
BglII AGATCT 1 cut(s) 864
BisI GCNGC 7 cut(s) 81, 84, 372, 534, 561, 783, 814
BlsI GCNGC 7 cut(s) 82, 85, 373, 535, 562, 784, 815
Bme1390I CCNGG 2 cut(s) 88, 413
Bme18I GGWCC 1 cut(s) 907
BmeRI GACNNNNNGTC 1 cut(s) 407
BmeT110I CYCGRG 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 503, 907
BmiI GGNNCC 2 cut(s) 257, 668
BmrFI CCNGG 2 cut(s) 88, 413
BmrI ACTGGG 1 cut(s) 654
BmuI ACTGGG 1 cut(s) 654
BplI GAGNNNNNCTC 2 cut(s) 82, 114
BpuEI CTTGAG 2 cut(s) 360, 979
BsaBI GATNNNNATC 1 cut(s) 986
BsaI GGTCTC 1 cut(s) 756
BsaJI CCNNGG 2 cut(s) 62, 338
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 211, 916
Bse118I RCCGGY 2 cut(s) 669, 837
Bse1I ACTGG 3 cut(s) 408, 649, 766
Bse8I GATNNNNATC 1 cut(s) 986
BseBI CCWGG 2 cut(s) 88, 413
BseDI CCNNGG 2 cut(s) 62, 338
BseGI GGATG 4 cut(s) 460, 594, 925, 987
BseJI GATNNNNATC 1 cut(s) 986
BseLI CCNNNNNNNGG 3 cut(s) 152, 211, 916
BseMII CTCAG 3 cut(s) 492, 927, 1002
BseNI ACTGG 3 cut(s) 408, 649, 766
BseXI GCAGC 7 cut(s) 70, 92, 358, 545, 547, 794, 800
BseYI CCCAGC 1 cut(s) 32
BshFI GGCC 4 cut(s) 505, 585, 673, 841
BshNI GGYRCC 1 cut(s) 666
BsiHKAI GWGCWC 2 cut(s) 71, 450
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 2 cut(s) 670, 838
BslFI GGGAC 2 cut(s) 414, 559
BslI CCNNNNNNNGG 3 cut(s) 152, 211, 916
BsmAI GTCTC 2 cut(s) 756, 1007
BsmFI GGGAC 2 cut(s) 414, 559
BsmI GAATGC 1 cut(s) 1048
BsnI GGCC 4 cut(s) 505, 585, 673, 841
Bso31I GGTCTC 1 cut(s) 756
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 71, 450
Bsp143I GATC 8 cut(s) 5, 255, 304, 342, 636, 748, 864, 927
BspANI GGCC 4 cut(s) 505, 585, 673, 841
BspCNI CTCAG 3 cut(s) 491, 928, 1003
BspLI GGNNCC 2 cut(s) 257, 668
BspMAI CTGCAG 1 cut(s) 721
BspPI GGATC 7 cut(s) 13, 250, 263, 312, 350, 631, 743
BspT107I GGYRCC 1 cut(s) 666
BspTNI GGTCTC 1 cut(s) 756
BsrFI RCCGGY 2 cut(s) 669, 837
BsrI ACTGG 3 cut(s) 408, 649, 766
BssAI RCCGGY 2 cut(s) 669, 837
BssECI CCNNGG 2 cut(s) 62, 338
BssMI GATC 8 cut(s) 5, 255, 304, 342, 636, 748, 864, 927
BssSI CACGAG 2 cut(s) 346, 395
BssT1I CCWWGG 2 cut(s) 62, 338
Bst2BI CACGAG 2 cut(s) 346, 395
Bst2UI CCWGG 2 cut(s) 88, 413
Bst4CI ACNGT 4 cut(s) 143, 518, 711, 725
Bst6I CTCTTC 1 cut(s) 339
BstAPI GCANNNNNTGC 1 cut(s) 1043
BstC8I GCNNGC 3 cut(s) 171, 492, 876
BstDEI CTNAG 6 cut(s) 298, 478, 658, 758, 936, 1011
BstEII GGTNACC 1 cut(s) 512
BstF5I GGATG 4 cut(s) 460, 594, 925, 987
BstKTI GATC 8 cut(s) 8, 258, 307, 345, 639, 751, 867, 930
BstMAI GTCTC 2 cut(s) 756, 1007
BstMBI GATC 8 cut(s) 5, 255, 304, 342, 636, 748, 864, 927
BstMWI GCNNNNNNNGC 3 cut(s) 111, 803, 1043
BstNI CCWGG 2 cut(s) 88, 413
BstPI GGTNACC 1 cut(s) 512
BstSCI CCNGG 2 cut(s) 86, 411
BstSFI CTRYAG 2 cut(s) 237, 717
BstV1I GCAGC 7 cut(s) 70, 92, 358, 545, 547, 794, 800
BstX2I RGATCY 5 cut(s) 5, 255, 636, 748, 864
BstYI RGATCY 5 cut(s) 5, 255, 636, 748, 864
BsuRI GGCC 4 cut(s) 505, 585, 673, 841
BtsCI GGATG 4 cut(s) 460, 594, 925, 987
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 2 cut(s) 543, 642
Cac8I GCNNGC 3 cut(s) 171, 492, 876
Cfr10I RCCGGY 2 cut(s) 669, 837
Cfr13I GGNCC 2 cut(s) 503, 907
Csp6I GTAC 4 cut(s) 519, 712, 952, 973
CviAII CATG 4 cut(s) 451, 524, 739, 914
CviQI GTAC 4 cut(s) 519, 712, 952, 973
DdeI CTNAG 6 cut(s) 298, 478, 658, 758, 936, 1011
DpnI GATC 8 cut(s) 7, 257, 306, 344, 638, 750, 866, 929
DpnII GATC 8 cut(s) 5, 255, 304, 342, 636, 748, 864, 927
DriI GACNNNNNGTC 1 cut(s) 407
EaeI YGGCCR 2 cut(s) 671, 839
Eam1104I CTCTTC 1 cut(s) 339
Eam1105I GACNNNNNGTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 2 cut(s) 62, 338
Eco31I GGTCTC 1 cut(s) 756
Eco47I GGWCC 1 cut(s) 907
Eco57I CTGAAG 1 cut(s) 1038
Eco88I CYCGRG 1 cut(s) 151
Eco91I GGTNACC 1 cut(s) 512
EcoO65I GGTNACC 1 cut(s) 512
EcoRII CCWGG 2 cut(s) 86, 411
EcoT14I CCWWGG 2 cut(s) 62, 338
ErhI CCWWGG 2 cut(s) 62, 338
FaeI CATG 4 cut(s) 454, 527, 742, 917
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FaqI GGGAC 2 cut(s) 414, 559
FatI CATG 4 cut(s) 450, 523, 738, 913
FbaI TGATCA 1 cut(s) 927
Fnu4HI GCNGC 7 cut(s) 81, 84, 372, 534, 561, 783, 814
FokI GGATG 4 cut(s) 467, 581, 932, 994
Fsp4HI GCNGC 7 cut(s) 81, 84, 372, 534, 561, 783, 814
FspBI CTAG 2 cut(s) 224, 495
GluI GCNGC 7 cut(s) 81, 84, 372, 534, 561, 783, 814
GsaI CCCAGC 1 cut(s) 36
HaeIII GGCC 4 cut(s) 505, 585, 673, 841
HapII CCGG 2 cut(s) 670, 838
Hin1II CATG 4 cut(s) 454, 527, 742, 917
HindIII AAGCTT 2 cut(s) 218, 689
HinfI GANTC 4 cut(s) 28, 91, 850, 887
HpaII CCGG 2 cut(s) 670, 838
HphI GGTGA 4 cut(s) 194, 427, 524, 1072
Hpy166II GTNNAC 1 cut(s) 952
Hpy188I TCNGA 3 cut(s) 121, 481, 789
Hpy188III TCNNGA 5 cut(s) 45, 346, 425, 868, 1010
Hpy8I GTNNAC 1 cut(s) 952
HpyAV CCTTC 2 cut(s) 494, 1009
HpyCH4III ACNGT 4 cut(s) 143, 518, 711, 725
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 6 cut(s) 80, 173, 719, 782, 830, 1046
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 803, 1043
HpyF3I CTNAG 6 cut(s) 298, 478, 658, 758, 936, 1011
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 4 cut(s) 454, 527, 742, 917
Ksp22I TGATCA 1 cut(s) 927
Kzo9I GATC 8 cut(s) 5, 255, 304, 342, 636, 748, 864, 927
LmnI GCTCC 4 cut(s) 66, 294, 682, 1034
Lsp1109I GCAGC 7 cut(s) 70, 92, 358, 545, 547, 794, 800
MaeI CTAG 2 cut(s) 224, 495
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 3 cut(s) 351, 512, 602
MalI GATC 8 cut(s) 7, 257, 306, 344, 638, 750, 866, 929
MboI GATC 8 cut(s) 5, 255, 304, 342, 636, 748, 864, 927
MboII GAAGA 2 cut(s) 148, 326
MfeI CAATTG 1 cut(s) 976
MflI RGATCY 5 cut(s) 5, 255, 636, 748, 864
MhlI GDGCHC 2 cut(s) 71, 450
MluCI AATT 3 cut(s) 182, 792, 976
MlyI GAGTC 2 cut(s) 22, 100
MmeI TCCRAC 4 cut(s) 283, 465, 934, 1012
MseI TTAA 3 cut(s) 108, 465, 777
MslI CAYNNNNRTG 1 cut(s) 918
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 2 cut(s) 670, 838
MspR9I CCNGG 2 cut(s) 88, 413
MunI CAATTG 1 cut(s) 976
Mva1269I GAATGC 1 cut(s) 1048
MvaI CCWGG 2 cut(s) 88, 413
MwoI GCNNNNNNNGC 3 cut(s) 111, 803, 1043
NdeII GATC 8 cut(s) 5, 255, 304, 342, 636, 748, 864, 927
NlaIII CATG 4 cut(s) 454, 527, 742, 917
NlaIV GGNNCC 2 cut(s) 257, 668
NmuCI GTSAC 2 cut(s) 512, 602
PctI GAATGC 1 cut(s) 1048
PfeI GAWTC 2 cut(s) 850, 887
PkrI GCNGC 7 cut(s) 82, 85, 373, 535, 562, 784, 815
PleI GAGTC 2 cut(s) 22, 99
PpsI GAGTC 2 cut(s) 22, 99
PshBI ATTAAT 1 cut(s) 777
Psp6I CCWGG 2 cut(s) 86, 411
PspEI GGTNACC 1 cut(s) 512
PspFI CCCAGC 1 cut(s) 32
PspGI CCWGG 2 cut(s) 86, 411
PspN4I GGNNCC 2 cut(s) 257, 668
PspPI GGNCC 2 cut(s) 503, 907
PsrI GAACNNNNNNTAC 2 cut(s) 131, 163
PstI CTGCAG 1 cut(s) 721
PsuI RGATCY 5 cut(s) 5, 255, 636, 748, 864
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 4 cut(s) 520, 713, 953, 974
RsaNI GTAC 4 cut(s) 519, 712, 952, 973
RseI CAYNNNNRTG 1 cut(s) 918
SaqAI TTAA 3 cut(s) 108, 465, 777
SatI GCNGC 7 cut(s) 81, 84, 372, 534, 561, 783, 814
Sau3AI GATC 8 cut(s) 5, 255, 304, 342, 636, 748, 864, 927
Sau96I GGNCC 2 cut(s) 503, 907
SchI GAGTC 2 cut(s) 22, 100
ScrFI CCNGG 2 cut(s) 88, 413
SduI GDGCHC 2 cut(s) 71, 450
SfcI CTRYAG 2 cut(s) 237, 717
SinI GGWCC 1 cut(s) 907
SmiMI CAYNNNNRTG 1 cut(s) 918
SmlI CTYRAG 2 cut(s) 375, 958
SmoI CTYRAG 2 cut(s) 375, 958
Sse9I AATT 3 cut(s) 182, 792, 976
SspMI CTAG 2 cut(s) 224, 495
StyD4I CCNGG 2 cut(s) 86, 411
StyI CCWWGG 2 cut(s) 62, 338
TaaI ACNGT 4 cut(s) 143, 518, 711, 725
TaiI ACGT 1 cut(s) 447
TaqI TCGA 3 cut(s) 424, 576, 969
TasI AATT 3 cut(s) 182, 792, 976
TatI WGTACW 2 cut(s) 951, 972
TfiI GAWTC 2 cut(s) 850, 887
Tru1I TTAA 3 cut(s) 108, 465, 777
Tru9I TTAA 3 cut(s) 108, 465, 777
TscAI CASTG 2 cut(s) 543, 649
TseFI GTSAC 2 cut(s) 512, 602
TseI GCWGC 7 cut(s) 80, 83, 371, 533, 560, 782, 813
Tsp45I GTSAC 2 cut(s) 512, 602
TspDTI ATGAA 2 cut(s) 291, 863
TspGWI ACGGA 2 cut(s) 90, 695
TspRI CASTG 2 cut(s) 543, 649
VpaK11BI GGWCC 1 cut(s) 907
VspI ATTAAT 1 cut(s) 777
XcmI CCANNNNNNNNNTGG 2 cut(s) 448, 917
XspI CTAG 2 cut(s) 224, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.