RLG00000003302
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000416
Physical Location & Seq
Reverse (-)
46899529 .. 46903098
3570 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003302

Sequence Viewer

Length: 1161 bp
ATGAAGTGTTTCTTTCCCTTCAAATCCAAGAACAAACAAAAGGAGTCAAAATCAGCTCCGGATTTGAGAAACAAAAGCGACTCCTTAACTCCGGTATTAGACCGTGCCTCGAAATCTTTACCTTCACCAAGAAGCATACCAGAATTGTACAAAGAGAAGGAGCAGAATTTGAAGGTTTTCTCACTCCAAGAGCTCAGGGATTCAACCAATGGCTTCAGCAGGTCGCAAAAGCTTGGTGAAGGAGGCTTTGGGAGTGTGTATAAAGGAATAATCAAGCCCAAAAATGGCAAGGGTAGTCCAATTTTGGTTGCCATAAAGAAGTTGAATCCACATAGCTTACAGGGTCATAAAGAGTGGCTAGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTATAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATATGAATATATGCCTAATAGGAGCTTAGAAGATCATCTTTTCAACAGGGCTTTGAATCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTAGATGAGGATTTTAAGCCGAAGCTCTCAGACTTCGGGCTTGCTAGAGAAGGGCCCAAGGGTGACCGTACTCATGTATCGACAGCTGTGGTTGGGACTTATGGATATGCTGCCCCAGAGTATGTTGAAACAGGCCATCTTTCCATCCATAGTGACTTGTGGAGTTTTGGTGTGGTGCTGTATGAGATCCTCACTGGGAGGCGTGTCTTAGAAAGACATCGGCCAACGGCGGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAAAAATTCAGCATGATAATAGATCCACTTCTGAGAGACCAGTATCCTATTAATGCAGCTCGGAAAATTGCCAAGTTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGACCGGCCAACAATGAATCAGGTAGTAGAGATCTTGAAGCAAGCTATACAAGATTCAGAAAAAGGTACCAACTCTGTAAATAACAATTTTGGGGCATCTGGGTCTAAAATGGGTAGAAAGAACCCCAAGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

387

Amino Acids

43.54

Weight (kDa)

9.65

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 73 - 351 1.6e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 75 - 353 6e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 210
Acc65I GGTACC 1 cut(s) 1088
AccB1I GGYRCC 1 cut(s) 1088
AccIII TCCGGA 1 cut(s) 58
AciI CCGC 1 cut(s) 869
AclWI GGATC 5 cut(s) 439, 452, 539, 820, 932
AcoI YGGCCR 2 cut(s) 860, 1028
AcsI RAATTY 2 cut(s) 166, 920
AcuI CTGAAG 1 cut(s) 199
AfaI GTAC 4 cut(s) 149, 709, 902, 1090
AfiI CCNNNNNNNGG 3 cut(s) 284, 400, 1155
AhdI GACNNNNNGTC 1 cut(s) 596
AjnI CCWGG 1 cut(s) 600
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
Alw21I GWGCWC 2 cut(s) 195, 639
Alw26I GTCTC 1 cut(s) 945
AlwI GGATC 5 cut(s) 439, 452, 539, 820, 932
Aor13HI TCCGGA 1 cut(s) 58
AoxI GGCC 4 cut(s) 692, 772, 860, 1028
ApaI GGGCCC 1 cut(s) 696
ApeKI GCWGC 4 cut(s) 560, 749, 971, 1002
ApoI RAATTY 2 cut(s) 166, 920
AseI ATTAAT 1 cut(s) 966
Asp700I GAANNNNTTC 2 cut(s) 8, 176
Asp718I GGTACC 1 cut(s) 1088
AspS9I GGNCC 2 cut(s) 692, 693
AsuHPI GGTGA 5 cut(s) 117, 248, 383, 616, 713
AsuNHI GCTAGC 1 cut(s) 358
BaeGI GKGCMC 1 cut(s) 696
BaeI ACNNNNGTAYC 2 cut(s) 699, 732
BamHI GGATCC 1 cut(s) 444
BanI GGYRCC 1 cut(s) 1088
BanII GRGCYC 2 cut(s) 195, 696
BauI CACGAG 2 cut(s) 535, 584
Bbv12I GWGCWC 2 cut(s) 195, 639
BbvI GCAGC 4 cut(s) 547, 736, 983, 989
BccI CCATC 3 cut(s) 425, 783, 791
BceAI ACGGC 2 cut(s) 467, 882
BciT130I CCWGG 1 cut(s) 602
BciVI GTATCC 1 cut(s) 969
BcoDI GTCTC 1 cut(s) 945
BfaI CTAG 3 cut(s) 359, 413, 684
BfmI CTRYAG 2 cut(s) 426, 906
BfuAI ACCTGC 1 cut(s) 210
BfuI GTATCC 1 cut(s) 969
BglI GCCNNNNNGGC 1 cut(s) 992
BglII AGATCT 1 cut(s) 1053
BisI GCNGC 4 cut(s) 561, 750, 972, 1003
BlsI GCNGC 4 cut(s) 562, 751, 973, 1004
Bme1390I CCNGG 1 cut(s) 602
BmeRI GACNNNNNGTC 1 cut(s) 596
BmgT120I GGNCC 2 cut(s) 692, 693
BmiI GGNNCC 3 cut(s) 446, 694, 1090
BmrFI CCNGG 1 cut(s) 602
BmrI ACTGGG 1 cut(s) 843
BmsI GCATC 1 cut(s) 1127
BmtI GCTAGC 1 cut(s) 362
BmuI ACTGGG 1 cut(s) 843
Bpu10I CCTNAGC 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 549
BsaI GGTCTC 1 cut(s) 945
BsaJI CCNNGG 2 cut(s) 527, 696
BsaWI WCCGGW 2 cut(s) 58, 91
BsaXI ACNNNNNCTCC 2 cut(s) 793, 823
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 400, 1155
Bse118I RCCGGY 1 cut(s) 1026
Bse1I ACTGG 3 cut(s) 597, 838, 955
BseAI TCCGGA 1 cut(s) 58
BseBI CCWGG 1 cut(s) 602
BseDI CCNNGG 2 cut(s) 527, 696
BseGI GGATG 1 cut(s) 783
BseLI CCNNNNNNNGG 3 cut(s) 284, 400, 1155
BseMII CTCAG 3 cut(s) 208, 681, 938
BseNI ACTGG 3 cut(s) 597, 838, 955
BseSI GKGCMC 1 cut(s) 696
BseXI GCAGC 4 cut(s) 547, 736, 983, 989
BshFI GGCC 4 cut(s) 694, 774, 862, 1030
BshNI GGYRCC 1 cut(s) 1088
BsiHKAI GWGCWC 2 cut(s) 195, 639
BsiSI CCGG 3 cut(s) 59, 92, 1027
BslFI GGGAC 2 cut(s) 603, 748
BslI CCNNNNNNNGG 3 cut(s) 284, 400, 1155
BsmAI GTCTC 1 cut(s) 945
BsmFI GGGAC 2 cut(s) 603, 748
BsmI GAATGC 1 cut(s) 1021
BsnI GGCC 4 cut(s) 694, 774, 862, 1030
Bso31I GGTCTC 1 cut(s) 945
Bsp120I GGGCCC 1 cut(s) 692
Bsp1286I GDGCHC 3 cut(s) 195, 639, 696
Bsp13I TCCGGA 1 cut(s) 58
Bsp1407I TGTACA 1 cut(s) 147
Bsp143I GATC 6 cut(s) 444, 493, 531, 825, 937, 1053
BspACI CCGC 1 cut(s) 869
BspANI GGCC 4 cut(s) 694, 774, 862, 1030
BspCNI CTCAG 3 cut(s) 207, 680, 939
BspEI TCCGGA 1 cut(s) 58
BspLI GGNNCC 3 cut(s) 446, 694, 1090
BspMAI CTGCAG 1 cut(s) 910
BspMI ACCTGC 1 cut(s) 210
BspOI GCTAGC 1 cut(s) 362
BspPI GGATC 5 cut(s) 439, 452, 539, 820, 932
BspT107I GGYRCC 1 cut(s) 1088
BspTNI GGTCTC 1 cut(s) 945
BsrFI RCCGGY 1 cut(s) 1026
BsrGI TGTACA 1 cut(s) 147
BsrI ACTGG 3 cut(s) 597, 838, 955
BssAI RCCGGY 1 cut(s) 1026
BssECI CCNNGG 2 cut(s) 527, 696
BssMI GATC 6 cut(s) 444, 493, 531, 825, 937, 1053
BssSI CACGAG 2 cut(s) 535, 584
BssT1I CCWWGG 2 cut(s) 527, 696
Bst2BI CACGAG 2 cut(s) 535, 584
Bst2UI CCWGG 1 cut(s) 602
Bst4CI ACNGT 4 cut(s) 104, 707, 900, 914
Bst6I CTCTTC 1 cut(s) 528
BstAUI TGTACA 1 cut(s) 147
BstC8I GCNNGC 3 cut(s) 360, 681, 1065
BstDEI CTNAG 6 cut(s) 194, 487, 640, 667, 847, 947
BstEII GGTNACC 1 cut(s) 701
BstF5I GGATG 1 cut(s) 783
BstKTI GATC 6 cut(s) 447, 496, 534, 828, 940, 1056
BstMAI GTCTC 1 cut(s) 945
BstMBI GATC 6 cut(s) 444, 493, 531, 825, 937, 1053
BstMWI GCNNNNNNNGC 1 cut(s) 992
BstNI CCWGG 1 cut(s) 602
BstPI GGTNACC 1 cut(s) 701
BstSCI CCNGG 1 cut(s) 600
BstSFI CTRYAG 2 cut(s) 426, 906
BstSLI GKGCMC 1 cut(s) 696
BstV1I GCAGC 4 cut(s) 547, 736, 983, 989
BstX2I RGATCY 4 cut(s) 444, 825, 937, 1053
BstYI RGATCY 4 cut(s) 444, 825, 937, 1053
BsuI GTATCC 1 cut(s) 969
BsuRI GGCC 4 cut(s) 694, 774, 862, 1030
BtsCI GGATG 1 cut(s) 783
BtsIMutI CAGTG 1 cut(s) 831
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 3 cut(s) 360, 681, 1065
Cfr10I RCCGGY 1 cut(s) 1026
Cfr13I GGNCC 2 cut(s) 692, 693
Csp6I GTAC 4 cut(s) 148, 708, 901, 1089
CviAII CATG 2 cut(s) 713, 928
CviQI GTAC 4 cut(s) 148, 708, 901, 1089
DdeI CTNAG 6 cut(s) 194, 487, 640, 667, 847, 947
DpnI GATC 6 cut(s) 446, 495, 533, 827, 939, 1055
DpnII GATC 6 cut(s) 444, 493, 531, 825, 937, 1053
DriI GACNNNNNGTC 1 cut(s) 596
EaeI YGGCCR 2 cut(s) 860, 1028
Eam1104I CTCTTC 1 cut(s) 528
Eam1105I GACNNNNNGTC 1 cut(s) 596
EarI CTCTTC 1 cut(s) 528
EciI GGCGGA 1 cut(s) 884
Ecl136II GAGCTC 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 527, 696
Eco24I GRGCYC 2 cut(s) 195, 696
Eco31I GGTCTC 1 cut(s) 945
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 199
Eco91I GGTNACC 1 cut(s) 701
EcoICRI GAGCTC 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 692
EcoO65I GGTNACC 1 cut(s) 701
EcoRII CCWGG 1 cut(s) 600
EcoT14I CCWWGG 2 cut(s) 527, 696
EcoT38I GRGCYC 2 cut(s) 195, 696
ErhI CCWWGG 2 cut(s) 527, 696
FaeI CATG 2 cut(s) 716, 931
FalI AAGNNNNNCTT 3 cut(s) 28, 483, 515
FaqI GGGAC 2 cut(s) 603, 748
FatI CATG 2 cut(s) 712, 927
Fnu4HI GCNGC 4 cut(s) 561, 750, 972, 1003
FokI GGATG 1 cut(s) 770
FriOI GRGCYC 2 cut(s) 195, 696
Fsp4HI GCNGC 4 cut(s) 561, 750, 972, 1003
FspBI CTAG 3 cut(s) 359, 413, 684
GluI GCNGC 4 cut(s) 561, 750, 972, 1003
HaeIII GGCC 4 cut(s) 694, 774, 862, 1030
HapII CCGG 3 cut(s) 59, 92, 1027
Hin1II CATG 2 cut(s) 716, 931
HindIII AAGCTT 3 cut(s) 230, 407, 878
HinfI GANTC 7 cut(s) 44, 80, 200, 325, 517, 1039, 1076
HpaII CCGG 3 cut(s) 59, 92, 1027
HphI GGTGA 5 cut(s) 117, 248, 383, 616, 713
Hpy188I TCNGA 4 cut(s) 670, 948, 978, 1081
Hpy188III TCNNGA 4 cut(s) 59, 535, 614, 1057
HpyAV CCTTC 6 cut(s) 28, 132, 151, 166, 233, 683
HpyCH4III ACNGT 4 cut(s) 104, 707, 900, 914
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 3 cut(s) 908, 971, 1019
HpyF10VI GCNNNNNNNGC 1 cut(s) 992
HpyF3I CTNAG 6 cut(s) 194, 487, 640, 667, 847, 947
HpySE526I ACGT 1 cut(s) 633
Hsp92II CATG 2 cut(s) 716, 931
Kpn2I TCCGGA 1 cut(s) 58
KpnI GGTACC 1 cut(s) 1092
Kzo9I GATC 6 cut(s) 444, 493, 531, 825, 937, 1053
LmnI GCTCC 4 cut(s) 61, 160, 483, 871
Lsp1109I GCAGC 4 cut(s) 547, 736, 983, 989
LweI GCATC 1 cut(s) 1127
MaeI CTAG 3 cut(s) 359, 413, 684
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 3 cut(s) 540, 701, 791
MalI GATC 6 cut(s) 446, 495, 533, 827, 939, 1055
MboI GATC 6 cut(s) 444, 493, 531, 825, 937, 1053
MboII GAAGA 2 cut(s) 503, 515
MflI RGATCY 4 cut(s) 444, 825, 937, 1053
MhlI GDGCHC 3 cut(s) 195, 639, 696
MluCI AATT 7 cut(s) 143, 166, 300, 371, 920, 981, 1108
MlyI GAGTC 2 cut(s) 53, 74
MmeI TCCRAC 2 cut(s) 472, 654
MroI TCCGGA 1 cut(s) 58
MroXI GAANNNNTTC 2 cut(s) 8, 176
MseI TTAA 3 cut(s) 86, 654, 966
MspA1I CMGCKG 1 cut(s) 725
MspI CCGG 3 cut(s) 59, 92, 1027
MspR9I CCNGG 1 cut(s) 602
Mva1269I GAATGC 1 cut(s) 1021
MvaI CCWGG 1 cut(s) 602
MwoI GCNNNNNNNGC 1 cut(s) 992
NdeII GATC 6 cut(s) 444, 493, 531, 825, 937, 1053
NheI GCTAGC 1 cut(s) 358
NlaIII CATG 2 cut(s) 716, 931
NlaIV GGNNCC 3 cut(s) 446, 694, 1090
NmuCI GTSAC 2 cut(s) 701, 791
PctI GAATGC 1 cut(s) 1021
PdmI GAANNNNTTC 2 cut(s) 8, 176
PfeI GAWTC 5 cut(s) 200, 325, 517, 1039, 1076
PkrI GCNGC 4 cut(s) 562, 751, 973, 1004
PleI GAGTC 2 cut(s) 52, 74
PpsI GAGTC 2 cut(s) 52, 74
PshBI ATTAAT 1 cut(s) 966
Psp124BI GAGCTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 600
PspEI GGTNACC 1 cut(s) 701
PspGI CCWGG 1 cut(s) 600
PspN4I GGNNCC 3 cut(s) 446, 694, 1090
PspOMI GGGCCC 1 cut(s) 692
PspPI GGNCC 2 cut(s) 692, 693
PstI CTGCAG 1 cut(s) 910
PsuI RGATCY 4 cut(s) 444, 825, 937, 1053
PvuII CAGCTG 1 cut(s) 725
RsaI GTAC 4 cut(s) 149, 709, 902, 1090
RsaNI GTAC 4 cut(s) 148, 708, 901, 1089
SacI GAGCTC 1 cut(s) 195
SaqAI TTAA 3 cut(s) 86, 654, 966
SatI GCNGC 4 cut(s) 561, 750, 972, 1003
Sau3AI GATC 6 cut(s) 444, 493, 531, 825, 937, 1053
Sau96I GGNCC 2 cut(s) 692, 693
SchI GAGTC 2 cut(s) 53, 74
ScrFI CCNGG 1 cut(s) 602
SduI GDGCHC 3 cut(s) 195, 639, 696
SfaNI GCATC 1 cut(s) 1127
SfcI CTRYAG 2 cut(s) 426, 906
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 7 cut(s) 143, 166, 300, 371, 920, 981, 1108
SsiI CCGC 1 cut(s) 869
SspMI CTAG 3 cut(s) 359, 413, 684
SstI GAGCTC 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 600
StyI CCWWGG 2 cut(s) 527, 696
TaaI ACNGT 4 cut(s) 104, 707, 900, 914
TaiI ACGT 1 cut(s) 636
TaqI TCGA 3 cut(s) 110, 613, 719
TasI AATT 7 cut(s) 143, 166, 300, 371, 920, 981, 1108
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 5 cut(s) 200, 325, 517, 1039, 1076
Tru1I TTAA 3 cut(s) 86, 654, 966
Tru9I TTAA 3 cut(s) 86, 654, 966
TscAI CASTG 1 cut(s) 838
TseFI GTSAC 2 cut(s) 701, 791
TseI GCWGC 4 cut(s) 560, 749, 971, 1002
Tsp45I GTSAC 2 cut(s) 701, 791
TspDTI ATGAA 3 cut(s) 17, 480, 1052
TspRI CASTG 1 cut(s) 838
VspI ATTAAT 1 cut(s) 966
XapI RAATTY 2 cut(s) 166, 920
XmnI GAANNNNTTC 2 cut(s) 8, 176
XspI CTAG 3 cut(s) 359, 413, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.