Rh7BG221600
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000416
Physical Location & Seq
Forward (+)
19067861 .. 19070080
2220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG221600.1

Sequence Viewer

Length: 246 bp
ATGCATAGACCCACCACTCATTATACTGAAAAACATGATTATGAAGATGATATGCAACCAGACCAAAGTGAATTGTCGAAAACTATTCCTAAAGTGAATGGTCATAAAGCATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCCAGGATATTGCTCTATAAATGGAGAAAAAGGGATTCAACGGCTACTGGTATATGAATATATGCCTATAGAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

81

Amino Acids

9.35

Weight (kDa)

5.89

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 2 cut(s) 128, 206
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 2 cut(s) 166, 242
AluI AGCT 2 cut(s) 166, 242
AsuHPI GGTGA 1 cut(s) 140
BceAI ACGGC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 234
Bme1390I CCNGG 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 157
BseNI ACTGG 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 157
BsrI ACTGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 243
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 117
CviAII CATG 2 cut(s) 35, 111
CviJI RGCY 4 cut(s) 115, 166, 211, 242
CviKI_1 RGCY 4 cut(s) 115, 166, 211, 242
DdeI CTNAG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 38, 114
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FatI CATG 2 cut(s) 34, 110
Hin1II CATG 2 cut(s) 38, 114
HindIII AAGCTT 2 cut(s) 164, 240
HinfI GANTC 1 cut(s) 202
HphI GGTGA 1 cut(s) 140
HpyCH4V TGCA 3 cut(s) 4, 55, 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 2 cut(s) 38, 114
LpnPI CCDG 5 cut(s) 72, 143, 156, 183, 200
MboII GAAGA 1 cut(s) 56
MluCI AATT 2 cut(s) 71, 128
MnlI CCTC 1 cut(s) 115
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 116
NlaIII CATG 2 cut(s) 38, 114
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 202
PfoI TCCNGGA 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 171
SetI ASST 3 cut(s) 126, 168, 244
SfcI CTRYAG 1 cut(s) 234
SgeI CNNG 9 cut(s) 47, 71, 123, 128, 146, 170, 182, 183, 227
SmiMI CAYNNNNRTG 1 cut(s) 39
Sse9I AATT 2 cut(s) 71, 128
StyD4I CCNGG 1 cut(s) 169
TaqI TCGA 1 cut(s) 77
TasI AATT 2 cut(s) 71, 128
TfiI GAWTC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 57, 237
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.