RchiOBHm_Chr7g0207471
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24790489 .. 24794185
3697 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18566

Sequence Viewer

Length: 825 bp
ATGATTGTGATGGGTCATAAAGAGTGGCTAGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTATAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATATGAATATATGCCTAATAGGAGCTTAGAAGATCATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGGTGATATATCAAGATTTCAAATTCTCCAACGTGCTCTTAGATGAGGACTTTGAGCTGAAGCTCTCAGACTTCGGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACGGCAGGACTTATGGATATGCTGCCCCCGAGTATGTGGAAGCTGACCATCTTTCCATCCATAGTGACTTATGGAGTTTTTGGTGTGGTGCTGTATGAGATCCTCACTGGGAGGCGTGTCTTAGAAAAACACCGGCCAACAGCGGAGCAGAAGCTTCTTTATTGGGCTAGACAGTACCCTGCAGACAGTAAAAAATTCAGCATGATAATAGATCCGCTTCTGAGAGACCAGTATTCTATTAATGCAGCTCGGAAAATTGCCAAGTTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGACCGGCCAACAATGAATCAGGTAGTAGAGATCTTGAAGCAAGCTATACAAGATTCAGAAAAGGGTACCAACTCTGTAAATAACAATTTTGGGGCATCTGGGTCTAAAATGGGTAGAAAGAACCCCAAGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

274

Amino Acids

31.15

Weight (kDa)

9.18

Isoelectric Point (pI)

26.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 6 - 241 3.1e-25 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 7 - 239 2.5e-26 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 752
AccB1I GGYRCC 1 cut(s) 752
AciI CCGC 2 cut(s) 533, 605
AclWI GGATC 5 cut(s) 109, 122, 209, 484, 596
AcoI YGGCCR 2 cut(s) 524, 692
AcsI RAATTY 2 cut(s) 293, 584
AcuI CTGAAG 1 cut(s) 350
AfaI GTAC 3 cut(s) 379, 566, 754
AfiI CCNNNNNNNGG 2 cut(s) 70, 819
AgsI TTSAA 5 cut(s) 41, 175, 187, 292, 724
AhdI GACNNNNNGTC 1 cut(s) 266
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 9 cut(s) 79, 156, 328, 334, 433, 544, 638, 666, 731
AluI AGCT 9 cut(s) 79, 156, 328, 334, 433, 544, 638, 666, 731
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 609
AlwI GGATC 5 cut(s) 109, 122, 209, 484, 596
Ama87I CYCGRG 1 cut(s) 418
AoxI GGCC 3 cut(s) 362, 524, 692
ApeKI GCWGC 4 cut(s) 230, 412, 635, 666
ApoI RAATTY 2 cut(s) 293, 584
AseI ATTAAT 1 cut(s) 630
Asp718I GGTACC 1 cut(s) 752
AspS9I GGNCC 1 cut(s) 362
AsuHPI GGTGA 3 cut(s) 53, 286, 383
AsuNHI GCTAGC 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 418
BaeI ACNNNNGTAYC 2 cut(s) 369, 402
BamHI GGATCC 1 cut(s) 114
BanI GGYRCC 1 cut(s) 752
BauI CACGAG 2 cut(s) 205, 254
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 4 cut(s) 217, 399, 647, 653
BccI CCATC 4 cut(s) 4, 95, 446, 454
BceAI ACGGC 2 cut(s) 137, 408
BciT130I CCWGG 1 cut(s) 272
BcoDI GTCTC 1 cut(s) 609
BfaI CTAG 4 cut(s) 29, 83, 354, 558
BfmI CTRYAG 2 cut(s) 96, 570
BglI GCCNNNNNGGC 1 cut(s) 656
BglII AGATCT 1 cut(s) 717
BisI GCNGC 4 cut(s) 231, 413, 636, 667
BlsI GCNGC 4 cut(s) 232, 414, 637, 668
Bme1390I CCNGG 1 cut(s) 272
BmeRI GACNNNNNGTC 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 2 cut(s) 116, 754
BmrFI CCNGG 1 cut(s) 272
BmrI ACTGGG 1 cut(s) 507
BmsI GCATC 1 cut(s) 791
BmtI GCTAGC 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 609
BsaJI CCNNGG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 819
Bse118I RCCGGY 2 cut(s) 522, 690
Bse1I ACTGG 3 cut(s) 267, 502, 619
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 446
BseLI CCNNNNNNNGG 2 cut(s) 70, 819
BseMII CTCAG 2 cut(s) 351, 602
BseNI ACTGG 3 cut(s) 267, 502, 619
BseXI GCAGC 4 cut(s) 217, 399, 647, 653
BshFI GGCC 3 cut(s) 364, 526, 694
BshNI GGYRCC 1 cut(s) 752
BsiHKAI GWGCWC 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 418
BsiSI CCGG 2 cut(s) 523, 691
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 2 cut(s) 70, 819
BsmAI GTCTC 1 cut(s) 609
BsmFI GGGAC 1 cut(s) 273
BsmI GAATGC 1 cut(s) 685
BsnI GGCC 3 cut(s) 364, 526, 694
Bso31I GGTCTC 1 cut(s) 609
BsoBI CYCGRG 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 6 cut(s) 114, 163, 201, 489, 601, 717
BspACI CCGC 2 cut(s) 533, 605
BspANI GGCC 3 cut(s) 364, 526, 694
BspCNI CTCAG 2 cut(s) 350, 603
BspLI GGNNCC 2 cut(s) 116, 754
BspMAI CTGCAG 1 cut(s) 574
BspOI GCTAGC 1 cut(s) 32
BspPI GGATC 5 cut(s) 109, 122, 209, 484, 596
BspT107I GGYRCC 1 cut(s) 752
BspTNI GGTCTC 1 cut(s) 609
BsrFI RCCGGY 2 cut(s) 522, 690
BsrI ACTGG 3 cut(s) 267, 502, 619
BssAI RCCGGY 2 cut(s) 522, 690
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 6 cut(s) 114, 163, 201, 489, 601, 717
BssSI CACGAG 2 cut(s) 205, 254
BssT1I CCWWGG 1 cut(s) 197
Bst2BI CACGAG 2 cut(s) 205, 254
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 3 cut(s) 377, 564, 578
Bst6I CTCTTC 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 30, 351, 729
BstDEI CTNAG 5 cut(s) 157, 310, 337, 511, 611
BstEII GGTNACC 1 cut(s) 371
BstF5I GGATG 1 cut(s) 446
BstKTI GATC 6 cut(s) 117, 166, 204, 492, 604, 720
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 6 cut(s) 114, 163, 201, 489, 601, 717
BstMWI GCNNNNNNNGC 1 cut(s) 656
BstNI CCWGG 1 cut(s) 272
BstPI GGTNACC 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 270
BstSFI CTRYAG 2 cut(s) 96, 570
BstV1I GCAGC 4 cut(s) 217, 399, 647, 653
BstX2I RGATCY 4 cut(s) 114, 489, 601, 717
BstYI RGATCY 4 cut(s) 114, 489, 601, 717
BsuRI GGCC 3 cut(s) 364, 526, 694
BtsCI GGATG 1 cut(s) 446
BtsIMutI CAGTG 1 cut(s) 495
Cac8I GCNNGC 3 cut(s) 30, 351, 729
Cfr10I RCCGGY 2 cut(s) 522, 690
Cfr13I GGNCC 1 cut(s) 362
Csp6I GTAC 3 cut(s) 378, 565, 753
CviAII CATG 2 cut(s) 383, 592
CviQI GTAC 3 cut(s) 378, 565, 753
DdeI CTNAG 5 cut(s) 157, 310, 337, 511, 611
DpnI GATC 6 cut(s) 116, 165, 203, 491, 603, 719
DpnII GATC 6 cut(s) 114, 163, 201, 489, 601, 717
DriI GACNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 2 cut(s) 524, 692
Eam1104I CTCTTC 1 cut(s) 198
Eam1105I GACNNNNNGTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 418
Eco91I GGTNACC 1 cut(s) 371
EcoO65I GGTNACC 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 197
FaeI CATG 2 cut(s) 386, 595
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FaqI GGGAC 1 cut(s) 273
FatI CATG 2 cut(s) 382, 591
Fnu4HI GCNGC 4 cut(s) 231, 413, 636, 667
FokI GGATG 1 cut(s) 433
Fsp4HI GCNGC 4 cut(s) 231, 413, 636, 667
FspBI CTAG 4 cut(s) 29, 83, 354, 558
GluI GCNGC 4 cut(s) 231, 413, 636, 667
HaeIII GGCC 3 cut(s) 364, 526, 694
HapII CCGG 2 cut(s) 523, 691
Hin1II CATG 2 cut(s) 386, 595
HindIII AAGCTT 2 cut(s) 77, 542
HinfI GANTC 2 cut(s) 703, 740
HpaII CCGG 2 cut(s) 523, 691
HphI GGTGA 3 cut(s) 53, 286, 383
Hpy188I TCNGA 4 cut(s) 340, 612, 642, 745
Hpy188III TCNNGA 3 cut(s) 205, 284, 721
Hpy99I CGWCG 1 cut(s) 394
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 3 cut(s) 377, 564, 578
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 3 cut(s) 572, 635, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 656
HpyF3I CTNAG 5 cut(s) 157, 310, 337, 511, 611
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 2 cut(s) 386, 595
KpnI GGTACC 1 cut(s) 756
Kzo9I GATC 6 cut(s) 114, 163, 201, 489, 601, 717
LmnI GCTCC 2 cut(s) 153, 535
Lsp1109I GCAGC 4 cut(s) 217, 399, 647, 653
LweI GCATC 1 cut(s) 791
MaeI CTAG 4 cut(s) 29, 83, 354, 558
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 3 cut(s) 210, 371, 454
MalI GATC 6 cut(s) 116, 165, 203, 491, 603, 719
MboI GATC 6 cut(s) 114, 163, 201, 489, 601, 717
MboII GAAGA 2 cut(s) 173, 185
MflI RGATCY 4 cut(s) 114, 489, 601, 717
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 5 cut(s) 41, 293, 584, 645, 772
MmeI TCCRAC 2 cut(s) 142, 324
MnlI CCTC 9 cut(s) 28, 104, 201, 201, 250, 310, 495, 503, 813
MseI TTAA 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 533
MspI CCGG 2 cut(s) 523, 691
MspR9I CCNGG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 685
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 656
NdeII GATC 6 cut(s) 114, 163, 201, 489, 601, 717
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 2 cut(s) 386, 595
NlaIV GGNNCC 2 cut(s) 116, 754
NmuCI GTSAC 2 cut(s) 371, 454
PctI GAATGC 1 cut(s) 685
PfeI GAWTC 2 cut(s) 703, 740
PkrI GCNGC 4 cut(s) 232, 414, 637, 668
PshBI ATTAAT 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 270
PspEI GGTNACC 1 cut(s) 371
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 116, 754
PspPI GGNCC 1 cut(s) 362
PstI CTGCAG 1 cut(s) 574
PsuI RGATCY 4 cut(s) 114, 489, 601, 717
RsaI GTAC 3 cut(s) 379, 566, 754
RsaNI GTAC 3 cut(s) 378, 565, 753
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 4 cut(s) 231, 413, 636, 667
Sau3AI GATC 6 cut(s) 114, 163, 201, 489, 601, 717
Sau96I GGNCC 1 cut(s) 362
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 1 cut(s) 309
SfaNI GCATC 1 cut(s) 791
SfcI CTRYAG 2 cut(s) 96, 570
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 5 cut(s) 41, 293, 584, 645, 772
SsiI CCGC 2 cut(s) 533, 605
SspMI CTAG 4 cut(s) 29, 83, 354, 558
StyD4I CCNGG 1 cut(s) 270
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 3 cut(s) 377, 564, 578
TaiI ACGT 1 cut(s) 306
TaqI TCGA 1 cut(s) 389
TasI AATT 5 cut(s) 41, 293, 584, 645, 772
TfiI GAWTC 2 cut(s) 703, 740
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 1 cut(s) 502
TseFI GTSAC 2 cut(s) 371, 454
TseI GCWGC 4 cut(s) 230, 412, 635, 666
Tsp45I GTSAC 2 cut(s) 371, 454
TspDTI ATGAA 2 cut(s) 150, 716
TspRI CASTG 1 cut(s) 502
VspI ATTAAT 1 cut(s) 630
XapI RAATTY 2 cut(s) 293, 584
XspI CTAG 4 cut(s) 29, 83, 354, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.