Rh7BG225000
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
19406172 .. 19407850
1679 bp
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UTR
Exon/CDS
Intron
Rh7BG225000.1

Sequence Viewer

Length: 366 bp
ATGCCCAAAAATGGCCAGGGTAGTCCAATTTTGGTTGCCATAAAAAAGTTGAATCCACATAGCTTACAGGGTCATAAAGCATGGCTTGCAGAGGTTCAATTTCTCGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCCAGGATATTGCTCTATAAATGGAGAAAGTGGGATTCAACGGCTATTGGTATATGAATATATGCCTAATAGAAGCTTAGAAGATCATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCGTATCTACACGAGGAACTGGAAGTCCAGGTGAATATAGTTTTCATTTATTTGACCTATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.67

Weight (kDa)

7.92

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 6 - 106 4.1e-13 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 11 - 106 1.2e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 13
AfiI CCNNNNNNNGG 2 cut(s) 11, 127
AgsI TTSAA 5 cut(s) 52, 98, 176, 232, 244
AjnI CCWGG 3 cut(s) 15, 139, 327
AloI GAACNNNNNNTCC 2 cut(s) 309, 341
AluBI AGCT 3 cut(s) 63, 136, 213
AluI AGCT 3 cut(s) 63, 136, 213
AlwI GGATC 1 cut(s) 266
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 110, 343
BalI TGGCCA 1 cut(s) 15
BauI CACGAG 2 cut(s) 262, 311
BbvI GCAGC 1 cut(s) 274
BceAI ACGGC 1 cut(s) 194
BciT130I CCWGG 3 cut(s) 17, 141, 329
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme1390I CCNGG 3 cut(s) 17, 141, 329
BmrFI CCNGG 3 cut(s) 17, 141, 329
BpuEI CTTGAG 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 16, 254
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 127
Bse1I ACTGG 1 cut(s) 324
BseBI CCWGG 3 cut(s) 17, 141, 329
BseDI CCNNGG 2 cut(s) 16, 254
BseLI CCNNNNNNNGG 2 cut(s) 11, 127
BseNI ACTGG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 274
BshFI GGCC 1 cut(s) 15
BslI CCNNNNNNNGG 2 cut(s) 11, 127
BsnI GGCC 1 cut(s) 15
Bsp143I GATC 2 cut(s) 220, 258
BspANI GGCC 1 cut(s) 15
BspPI GGATC 1 cut(s) 266
BsrI ACTGG 1 cut(s) 324
BssECI CCNNGG 2 cut(s) 16, 254
BssMI GATC 2 cut(s) 220, 258
BssSI CACGAG 2 cut(s) 262, 311
BssT1I CCWWGG 1 cut(s) 254
Bst2BI CACGAG 2 cut(s) 262, 311
Bst2UI CCWGG 3 cut(s) 17, 141, 329
Bst6I CTCTTC 1 cut(s) 255
BstAPI GCANNNNNTGC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 214
BstKTI GATC 2 cut(s) 223, 261
BstMBI GATC 2 cut(s) 220, 258
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 3 cut(s) 17, 141, 329
BstSCI CCNGG 3 cut(s) 15, 139, 327
BstV1I GCAGC 1 cut(s) 274
BsuRI GGCC 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 87
CviAII CATG 1 cut(s) 81
CviJI RGCY 7 cut(s) 15, 63, 85, 136, 181, 213, 239
CviKI_1 RGCY 7 cut(s) 15, 63, 85, 136, 181, 213, 239
DdeI CTNAG 1 cut(s) 214
DpnI GATC 2 cut(s) 222, 260
DpnII GATC 2 cut(s) 220, 258
EaeI YGGCCR 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 254
EcoRII CCWGG 3 cut(s) 15, 139, 327
EcoT14I CCWWGG 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 254
FaeI CATG 1 cut(s) 84
FalI AAGNNNNNCTT 4 cut(s) 69, 101, 210, 242
FatI CATG 1 cut(s) 80
Fnu4HI GCNGC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 288
HaeIII GGCC 1 cut(s) 15
Hin1II CATG 1 cut(s) 84
HindIII AAGCTT 2 cut(s) 134, 211
HinfI GANTC 2 cut(s) 52, 172
HphI GGTGA 2 cut(s) 110, 343
Hpy188III TCNNGA 1 cut(s) 262
HpyCH4V TGCA 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 214
Hsp92II CATG 1 cut(s) 84
Kzo9I GATC 2 cut(s) 220, 258
Lsp1109I GCAGC 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 267
MalI GATC 2 cut(s) 222, 260
MboI GATC 2 cut(s) 220, 258
MboII GAAGA 2 cut(s) 230, 242
MlsI TGGCCA 1 cut(s) 15
MluCI AATT 2 cut(s) 27, 98
MluNI TGGCCA 1 cut(s) 15
MnlI CCTC 4 cut(s) 85, 258, 258, 307
Mox20I TGGCCA 1 cut(s) 15
MscI TGGCCA 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 15
MspR9I CCNGG 3 cut(s) 17, 141, 329
MvaI CCWGG 3 cut(s) 17, 141, 329
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 2 cut(s) 220, 258
NlaIII CATG 1 cut(s) 84
PfeI GAWTC 2 cut(s) 52, 172
PfoI TCCNGGA 1 cut(s) 139
PkrI GCNGC 1 cut(s) 289
Psp6I CCWGG 3 cut(s) 15, 139, 327
PspGI CCWGG 3 cut(s) 15, 139, 327
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 2 cut(s) 220, 258
ScrFI CCNGG 3 cut(s) 17, 141, 329
SetI ASST 7 cut(s) 65, 96, 138, 215, 269, 333, 359
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 2 cut(s) 27, 98
StyD4I CCNGG 3 cut(s) 15, 139, 327
StyI CCWWGG 1 cut(s) 254
TasI AATT 2 cut(s) 27, 98
TfiI GAWTC 2 cut(s) 52, 172
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 207, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.