RchiOBHm_Chr7g0206801
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24346977 .. 24350843
3867 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18509

Sequence Viewer

Length: 453 bp
ATGGTAAATAGACTTGTTTCTCTCAGCTGGAAAACATATCATGCAGCGTTCTTTTGTCTGATAATGCTCTTACCTGTTACTAAAGAAAGAGATTTTTTCTCTCAAGAACTTGAATTGGAACAGATCGTCAAATTTTGTGGATGGATAAAAGGTCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAGTCACCCAAATCTAGCAAAGCTTCTAGGATATTGCTCTATAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATGTGAATATATGCCTAATAGGAGCTTAGAAGATCATCTTTTCAACAGGGTTTTGAACCCTCTTCCTTGGATCACGAGATTTGGTTCAGCTCTGCTTGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGTACTCAGACTTTGGGCTTGCTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

150

Amino Acids

17.53

Weight (kDa)

7.69

Isoelectric Point (pI)

22.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 52 - 150 3.6e-09 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 52 - 150 4.2e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 247, 260, 347
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 1 cut(s) 428
AgsI TTSAA 5 cut(s) 113, 179, 313, 325, 385
AluBI AGCT 4 cut(s) 27, 217, 294, 359
AluI AGCT 4 cut(s) 27, 217, 294, 359
Alw21I GWGCWC 1 cut(s) 402
AlwI GGATC 3 cut(s) 247, 260, 347
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 191
BamHI GGATCC 1 cut(s) 252
BauI CACGAG 1 cut(s) 343
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 56
BccI CCATC 2 cut(s) 135, 233
BceAI ACGGC 1 cut(s) 275
BfaI CTAG 3 cut(s) 209, 221, 447
BfmI CTRYAG 1 cut(s) 234
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmcAI AGTACT 1 cut(s) 428
BmiI GGNNCC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 2 cut(s) 146, 412
BseMII CTCAG 2 cut(s) 37, 444
BseXI GCAGC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 4 cut(s) 123, 252, 301, 339
BspCNI CTCAG 2 cut(s) 36, 443
BspLI GGNNCC 1 cut(s) 254
BspPI GGATC 3 cut(s) 247, 260, 347
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 4 cut(s) 123, 252, 301, 339
BssSI CACGAG 1 cut(s) 343
BssT1I CCWWGG 1 cut(s) 335
Bst2BI CACGAG 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 336
BstC8I GCNNGC 2 cut(s) 168, 444
BstDEI CTNAG 3 cut(s) 23, 295, 430
BstF5I GGATG 2 cut(s) 146, 412
BstKTI GATC 4 cut(s) 126, 255, 304, 342
BstMBI GATC 4 cut(s) 123, 252, 301, 339
BstSFI CTRYAG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
BtsCI GGATG 2 cut(s) 146, 412
Cac8I GCNNGC 2 cut(s) 168, 444
Csp6I GTAC 1 cut(s) 427
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 1 cut(s) 41
CviJI RGCY 8 cut(s) 27, 166, 217, 262, 294, 359, 421, 442
CviKI_1 RGCY 8 cut(s) 27, 166, 217, 262, 294, 359, 421, 442
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 3 cut(s) 23, 295, 430
DpnI GATC 4 cut(s) 125, 254, 303, 341
DpnII GATC 4 cut(s) 123, 252, 301, 339
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 1 cut(s) 44
FaiI YATR 8 cut(s) 37, 42, 156, 236, 271, 279, 281, 373
FalI AAGNNNNNCTT 4 cut(s) 150, 182, 291, 323
FatI CATG 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 2 cut(s) 153, 419
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 3 cut(s) 209, 221, 447
GluI GCNGC 1 cut(s) 45
Hin1II CATG 1 cut(s) 44
HindIII AAGCTT 1 cut(s) 215
HphI GGTGA 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 60, 433
Hpy188III TCNNGA 3 cut(s) 104, 343, 377
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 2 cut(s) 44, 170
HpyF3I CTNAG 3 cut(s) 23, 295, 430
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 1 cut(s) 44
Kzo9I GATC 4 cut(s) 123, 252, 301, 339
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 3 cut(s) 13, 87, 301
Lsp1109I GCAGC 1 cut(s) 56
MaeI CTAG 3 cut(s) 209, 221, 447
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 2 cut(s) 76, 197
MalI GATC 4 cut(s) 125, 254, 303, 341
MboI GATC 4 cut(s) 123, 252, 301, 339
MboII GAAGA 2 cut(s) 311, 323
MflI RGATCY 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 3 cut(s) 113, 131, 179
MmeI TCCRAC 2 cut(s) 280, 417
MnlI CCTC 5 cut(s) 166, 242, 339, 400, 403
MseI TTAA 1 cut(s) 417
MspA1I CMGCKG 1 cut(s) 27
NdeII GATC 4 cut(s) 123, 252, 301, 339
NlaIII CATG 1 cut(s) 44
NlaIV GGNNCC 1 cut(s) 254
NmuCI GTSAC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 254
PsuI RGATCY 1 cut(s) 252
PvuII CAGCTG 1 cut(s) 27
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 4 cut(s) 123, 252, 301, 339
ScaI AGTACT 1 cut(s) 428
SduI GDGCHC 1 cut(s) 402
SetI ASST 8 cut(s) 29, 76, 154, 177, 219, 296, 361, 399
SfcI CTRYAG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 3 cut(s) 113, 131, 179
SspMI CTAG 3 cut(s) 209, 221, 447
StyI CCWWGG 1 cut(s) 335
TaiI ACGT 1 cut(s) 399
TaqI TCGA 1 cut(s) 376
TasI AATT 3 cut(s) 113, 131, 179
TatI WGTACW 1 cut(s) 426
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 197
XapI RAATTY 1 cut(s) 131
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XspI CTAG 3 cut(s) 209, 221, 447
ZrmI AGTACT 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.