RLG00000003326
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000416
Physical Location & Seq
Forward (+)
47121751 .. 47125019
3269 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003326

Sequence Viewer

Length: 672 bp
ATGAAGTGCTTCTTTCCCTTCAAATCCAAGAACAAACAAAAGGTATCAAAATCAGCTCCGGATTTGAGAAACAAAAGAGACTCCTTAACTCCGGTATTAGACCGTGCCTCGAAATCTCTACCTTCACCAAGAAGCATACCAGAATTGTATAGAGAGAAGGAGCATAATTCGAAGGTTTTCTCATTCCAAGAGCTCAGGGATGCAACCAATGGCCTCAGCAGGTTGCAAAGGCTTGGTGAAGGAGGCTTTGGGAGTGTGTATAAAGGAATAATCAAGCCCAAAAATGGCAAGGGTACTCCAATTTTGGTTGCCATAAAGAAGTTAAATCCACATAGCTTACAGGGTCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTATAGATGGAGAAAGAGGGATCCAACAGCTATTGGTGGTAGGGACTTACGGATATGCTACCCTAGAGTATGTCGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTGCTGTATGAGATCCTCATTGGGAGGCGTGTCTTAGAAAGACACCAGCCAACAGCAGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACGGTAAAAAGTTCAGCATGCACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

224

Amino Acids

25.29

Weight (kDa)

9.78

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 74 - 145 3.4e-12 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 74 - 142 1.7e-07 Protein kinase domain
Pkinase PF00069 154 - 202 6.3e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 210
AccIII TCCGGA 1 cut(s) 58
AclWI GGATC 3 cut(s) 439, 452, 553
AfaI GTAC 2 cut(s) 295, 635
AfiI CCNNNNNNNGG 3 cut(s) 284, 400, 644
AgsI TTSAA 2 cut(s) 22, 371
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AluBI AGCT 6 cut(s) 56, 193, 336, 409, 454, 613
AluI AGCT 6 cut(s) 56, 193, 336, 409, 454, 613
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 3 cut(s) 439, 452, 553
Aor13HI TCCGGA 1 cut(s) 58
AoxI GGCC 2 cut(s) 211, 505
Asp700I GAANNNNTTC 2 cut(s) 8, 176
AsuHPI GGTGA 3 cut(s) 117, 248, 383
AsuII TTCGAA 1 cut(s) 170
BamHI GGATCC 1 cut(s) 444
BanII GRGCYC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 195
BbvCI CCTCAGC 1 cut(s) 215
BccI CCATC 3 cut(s) 425, 516, 524
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 2 cut(s) 413, 488
BfmI CTRYAG 2 cut(s) 426, 639
BfuAI ACCTGC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 446
BmsI GCATC 1 cut(s) 190
Bpu10I CCTNAGC 2 cut(s) 194, 215
Bpu14I TTCGAA 1 cut(s) 170
BsaWI WCCGGW 2 cut(s) 58, 91
BsaXI ACNNNNNCTCC 2 cut(s) 526, 556
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 400, 644
BseAI TCCGGA 1 cut(s) 58
BseGI GGATG 2 cut(s) 205, 516
BseLI CCNNNNNNNGG 3 cut(s) 284, 400, 644
BseMII CTCAG 2 cut(s) 208, 229
BshFI GGCC 2 cut(s) 213, 507
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 2 cut(s) 59, 92
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 3 cut(s) 284, 400, 644
BsmAI GTCTC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 481
BsnI GGCC 2 cut(s) 213, 507
Bsp119I TTCGAA 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 195
Bsp13I TCCGGA 1 cut(s) 58
Bsp143I GATC 2 cut(s) 444, 558
BspANI GGCC 2 cut(s) 213, 507
BspCNI CTCAG 2 cut(s) 207, 228
BspEI TCCGGA 1 cut(s) 58
BspHI TCATGA 1 cut(s) 668
BspLI GGNNCC 1 cut(s) 446
BspMAI CTGCAG 1 cut(s) 643
BspMI ACCTGC 1 cut(s) 210
BspPI GGATC 3 cut(s) 439, 452, 553
BspT104I TTCGAA 1 cut(s) 170
BssMI GATC 2 cut(s) 444, 558
Bst4CI ACNGT 3 cut(s) 104, 633, 647
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 360, 662
BstDEI CTNAG 3 cut(s) 194, 215, 580
BstF5I GGATG 2 cut(s) 205, 516
BstKTI GATC 2 cut(s) 447, 561
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 2 cut(s) 444, 558
BstNSI RCATGY 1 cut(s) 664
BstSFI CTRYAG 2 cut(s) 426, 639
BstX2I RGATCY 2 cut(s) 444, 558
BstYI RGATCY 2 cut(s) 444, 558
BsuRI GGCC 2 cut(s) 213, 507
BtsCI GGATG 2 cut(s) 205, 516
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 360, 662
CciI TCATGA 1 cut(s) 668
Csp6I GTAC 2 cut(s) 294, 634
CviAII CATG 2 cut(s) 661, 669
CviQI GTAC 2 cut(s) 294, 634
DdeI CTNAG 3 cut(s) 194, 215, 580
DpnI GATC 2 cut(s) 446, 560
DpnII GATC 2 cut(s) 444, 558
Ecl136II GAGCTC 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 195
Eco53kI GAGCTC 1 cut(s) 193
EcoICRI GAGCTC 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 195
FaeI CATG 2 cut(s) 664, 672
FalI AAGNNNNNCTT 3 cut(s) 28, 342, 374
FaqI GGGAC 1 cut(s) 481
FatI CATG 2 cut(s) 660, 668
FokI GGATG 2 cut(s) 212, 503
FriOI GRGCYC 1 cut(s) 195
FspBI CTAG 2 cut(s) 413, 488
HaeIII GGCC 2 cut(s) 213, 507
HapII CCGG 2 cut(s) 59, 92
Hin1II CATG 2 cut(s) 664, 672
HindIII AAGCTT 2 cut(s) 407, 611
HinfI GANTC 1 cut(s) 80
HpaII CCGG 2 cut(s) 59, 92
HphI GGTGA 3 cut(s) 117, 248, 383
Hpy188III TCNNGA 2 cut(s) 59, 669
HpyAV CCTTC 5 cut(s) 28, 132, 151, 166, 233
HpyCH4III ACNGT 3 cut(s) 104, 633, 647
HpyCH4V TGCA 5 cut(s) 203, 226, 362, 641, 664
HpyF3I CTNAG 3 cut(s) 194, 215, 580
Hsp92II CATG 2 cut(s) 664, 672
Kpn2I TCCGGA 1 cut(s) 58
Kzo9I GATC 2 cut(s) 444, 558
LmnI GCTCC 2 cut(s) 61, 160
LweI GCATC 1 cut(s) 190
MaeI CTAG 2 cut(s) 413, 488
MaeIII GTNAC 1 cut(s) 524
MalI GATC 2 cut(s) 446, 560
MboI GATC 2 cut(s) 444, 558
MflI RGATCY 2 cut(s) 444, 558
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 4 cut(s) 143, 166, 300, 371
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 472
MnlI CCTC 7 cut(s) 118, 224, 236, 358, 434, 564, 572
MroI TCCGGA 1 cut(s) 58
MroXI GAANNNNTTC 2 cut(s) 8, 176
MseI TTAA 2 cut(s) 86, 323
MspI CCGG 2 cut(s) 59, 92
NdeII GATC 2 cut(s) 444, 558
NlaIII CATG 2 cut(s) 664, 672
NlaIV GGNNCC 1 cut(s) 446
NmuCI GTSAC 1 cut(s) 524
NspI RCATGY 1 cut(s) 664
NspV TTCGAA 1 cut(s) 170
PaeI GCATGC 1 cut(s) 664
PagI TCATGA 1 cut(s) 668
PdmI GAANNNNTTC 2 cut(s) 8, 176
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
Psp124BI GAGCTC 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 446
PstI CTGCAG 1 cut(s) 643
PsuI RGATCY 2 cut(s) 444, 558
RsaI GTAC 2 cut(s) 295, 635
RsaNI GTAC 2 cut(s) 294, 634
SacI GAGCTC 1 cut(s) 195
SaqAI TTAA 2 cut(s) 86, 323
Sau3AI GATC 2 cut(s) 444, 558
SchI GAGTC 1 cut(s) 74
SduI GDGCHC 1 cut(s) 195
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 2 cut(s) 426, 639
SfuI TTCGAA 1 cut(s) 170
SphI GCATGC 1 cut(s) 664
Sse9I AATT 4 cut(s) 143, 166, 300, 371
SspMI CTAG 2 cut(s) 413, 488
SstI GAGCTC 1 cut(s) 195
TaaI ACNGT 3 cut(s) 104, 633, 647
TaqI TCGA 3 cut(s) 110, 170, 498
TasI AATT 4 cut(s) 143, 166, 300, 371
Tru1I TTAA 2 cut(s) 86, 323
Tru9I TTAA 2 cut(s) 86, 323
TseFI GTSAC 1 cut(s) 524
Tsp45I GTSAC 1 cut(s) 524
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 489
XceI RCATGY 1 cut(s) 664
XmnI GAANNNNTTC 2 cut(s) 8, 176
XspI CTAG 2 cut(s) 413, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.