Rroxscaffold_7G00207090
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000416
Physical Location & Seq
Reverse (-)
56973859 .. 56977096
3238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207090.1

Sequence Viewer

Length: 522 bp
ATGAAGTGCATCTTTCCCTTCAAATCCAAGAACAAACAAAAGGAGTCAAAATCAGCTCCAGATTTGAGAAACAAAAGCGAGTCCTTAACTCCGGTATTAGACCCTACCCTTTGTCTGACAAATAGTGCTTGGATCCCGAGGTTACAAATAATACTTGGTGCTGCTCAAAGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGTTGGTAGGGACTTATGGGTATGCTGCCCCAGAGTATGTTGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTCCTGTATGAGATCCTCACTGGGAGGCGTTTGTTAGAAAGACACCGGCCAACAGTGGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAAAGGTTCAGCATGATAATAGATCCACTCCTGAGAGACCAGTATTGTATTAATGTAGCTCGGAAAATCGCCAAGTTGGCAGATAGCTGCCTGAACAAGAATTCGAAAGGCAGGCCAACAATGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

173

Amino Acids

19.81

Weight (kDa)

9.49

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 63 - 172 1.6e-13 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 74 - 172 9.3e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 127, 140, 298, 410
AcoI YGGCCR 1 cut(s) 338
AcsI RAATTY 1 cut(s) 493
AfaI GTAC 1 cut(s) 380
AgsI TTSAA 2 cut(s) 22, 245
AhdI GACNNNNNGTC 1 cut(s) 197
AluBI AGCT 4 cut(s) 56, 358, 452, 480
AluI AGCT 4 cut(s) 56, 358, 452, 480
Alw26I GTCTC 1 cut(s) 423
AlwI GGATC 4 cut(s) 127, 140, 298, 410
Ama87I CYCGRG 1 cut(s) 136
AoxI GGCC 3 cut(s) 250, 338, 506
ApeKI GCWGC 3 cut(s) 161, 227, 480
ApoI RAATTY 1 cut(s) 493
AseI ATTAAT 1 cut(s) 444
AspS9I GGNCC 1 cut(s) 292
AsuII TTCGAA 1 cut(s) 497
AvaI CYCGRG 1 cut(s) 136
AvaII GGWCC 1 cut(s) 292
BamHI GGATCC 1 cut(s) 132
BauI CACGAG 1 cut(s) 185
BbvI GCAGC 3 cut(s) 148, 214, 467
BccI CCATC 2 cut(s) 261, 269
BcoDI GTCTC 1 cut(s) 423
BfmI CTRYAG 1 cut(s) 384
BglI GCCNNNNNGGC 1 cut(s) 470
BisI GCNGC 3 cut(s) 162, 228, 481
BlsI GCNGC 3 cut(s) 163, 229, 482
Bme18I GGWCC 1 cut(s) 292
BmeRI GACNNNNNGTC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 134
BmrI ACTGGG 1 cut(s) 321
BmsI GCATC 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 42
Bpu14I TTCGAA 1 cut(s) 497
BsaI GGTCTC 1 cut(s) 423
BsaJI CCNNGG 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bse118I RCCGGY 1 cut(s) 336
Bse1I ACTGG 4 cut(s) 198, 202, 316, 433
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 4 cut(s) 198, 202, 316, 433
BseXI GCAGC 3 cut(s) 148, 214, 467
BshFI GGCC 3 cut(s) 252, 340, 508
BsiHKCI CYCGRG 1 cut(s) 136
BsiSI CCGG 2 cut(s) 92, 337
BslFI GGGAC 2 cut(s) 204, 226
BsmAI GTCTC 1 cut(s) 423
BsmFI GGGAC 2 cut(s) 204, 226
BsnI GGCC 3 cut(s) 252, 340, 508
Bso31I GGTCTC 1 cut(s) 423
BsoBI CYCGRG 1 cut(s) 136
Bsp119I TTCGAA 1 cut(s) 497
Bsp143I GATC 3 cut(s) 132, 303, 415
BspANI GGCC 3 cut(s) 252, 340, 508
BspCNI CTCAG 1 cut(s) 417
BspLI GGNNCC 1 cut(s) 134
BspMAI CTGCAG 1 cut(s) 388
BspPI GGATC 4 cut(s) 127, 140, 298, 410
BspT104I TTCGAA 1 cut(s) 497
BspTNI GGTCTC 1 cut(s) 423
BsrFI RCCGGY 1 cut(s) 336
BsrI ACTGG 4 cut(s) 198, 202, 316, 433
BssAI RCCGGY 1 cut(s) 336
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 3 cut(s) 132, 303, 415
BssSI CACGAG 1 cut(s) 185
Bst2BI CACGAG 1 cut(s) 185
Bst4CI ACNGT 3 cut(s) 346, 378, 392
BstBI TTCGAA 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 506
BstDEI CTNAG 1 cut(s) 425
BstF5I GGATG 1 cut(s) 261
BstKTI GATC 3 cut(s) 135, 306, 418
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 3 cut(s) 132, 303, 415
BstMWI GCNNNNNNNGC 1 cut(s) 470
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 3 cut(s) 148, 214, 467
BstX2I RGATCY 3 cut(s) 132, 303, 415
BstYI RGATCY 3 cut(s) 132, 303, 415
BsuRI GGCC 3 cut(s) 252, 340, 508
BtsCI GGATG 1 cut(s) 261
BtsIMutI CAGTG 2 cut(s) 309, 351
Cac8I GCNNGC 1 cut(s) 506
Cfr10I RCCGGY 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 292
Csp6I GTAC 1 cut(s) 379
CviAII CATG 1 cut(s) 406
CviJI RGCY 8 cut(s) 56, 176, 252, 340, 358, 452, 480, 508
CviKI_1 RGCY 8 cut(s) 56, 176, 252, 340, 358, 452, 480, 508
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 1 cut(s) 425
DpnI GATC 3 cut(s) 134, 305, 417
DpnII GATC 3 cut(s) 132, 303, 415
DriI GACNNNNNGTC 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 338
Eam1105I GACNNNNNGTC 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 292
Eco88I CYCGRG 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 493
FaeI CATG 1 cut(s) 409
FaiI YATR 7 cut(s) 219, 225, 240, 267, 277, 300, 407
FalI AAGNNNNNCTT 3 cut(s) 28, 160, 192
FaqI GGGAC 2 cut(s) 204, 226
FatI CATG 1 cut(s) 405
Fnu4HI GCNGC 3 cut(s) 162, 228, 481
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 3 cut(s) 162, 228, 481
GluI GCNGC 3 cut(s) 162, 228, 481
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 3 cut(s) 252, 340, 508
HapII CCGG 2 cut(s) 92, 337
Hin1II CATG 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 2 cut(s) 44, 80
HpaII CCGG 2 cut(s) 92, 337
Hpy188I TCNGA 2 cut(s) 117, 456
Hpy188III TCNNGA 3 cut(s) 59, 136, 424
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 3 cut(s) 346, 378, 392
HpyCH4V TGCA 2 cut(s) 9, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 470
HpyF3I CTNAG 1 cut(s) 425
Hsp92II CATG 1 cut(s) 409
Kzo9I GATC 3 cut(s) 132, 303, 415
LmnI GCTCC 2 cut(s) 61, 349
Lsp1109I GCAGC 3 cut(s) 148, 214, 467
LweI GCATC 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 141, 269
MalI GATC 3 cut(s) 134, 305, 417
MboI GATC 3 cut(s) 132, 303, 415
MflI RGATCY 3 cut(s) 132, 303, 415
MluCI AATT 2 cut(s) 493, 517
MlyI GAGTC 2 cut(s) 53, 89
MnlI CCTC 4 cut(s) 132, 181, 309, 317
MseI TTAA 2 cut(s) 86, 444
MspI CCGG 2 cut(s) 92, 337
MwoI GCNNNNNNNGC 1 cut(s) 470
NdeII GATC 3 cut(s) 132, 303, 415
NlaIII CATG 1 cut(s) 409
NlaIV GGNNCC 1 cut(s) 134
NmuCI GTSAC 1 cut(s) 269
NspV TTCGAA 1 cut(s) 497
PkrI GCNGC 3 cut(s) 163, 229, 482
PleI GAGTC 2 cut(s) 52, 88
PpsI GAGTC 2 cut(s) 52, 88
PshBI ATTAAT 1 cut(s) 444
PspN4I GGNNCC 1 cut(s) 134
PspPI GGNCC 1 cut(s) 292
PstI CTGCAG 1 cut(s) 388
PsuI RGATCY 3 cut(s) 132, 303, 415
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SaqAI TTAA 2 cut(s) 86, 444
SatI GCNGC 3 cut(s) 162, 228, 481
Sau3AI GATC 3 cut(s) 132, 303, 415
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 2 cut(s) 53, 89
SetI ASST 6 cut(s) 58, 143, 360, 401, 454, 482
SfaNI GCATC 1 cut(s) 18
SfcI CTRYAG 1 cut(s) 384
SfuI TTCGAA 1 cut(s) 497
SinI GGWCC 1 cut(s) 292
Sse9I AATT 2 cut(s) 493, 517
TaaI ACNGT 3 cut(s) 346, 378, 392
TaqI TCGA 1 cut(s) 497
TasI AATT 2 cut(s) 493, 517
Tru1I TTAA 2 cut(s) 86, 444
Tru9I TTAA 2 cut(s) 86, 444
TscAI CASTG 2 cut(s) 316, 351
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 3 cut(s) 161, 227, 480
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 316, 351
VpaK11BI GGWCC 1 cut(s) 292
VspI ATTAAT 1 cut(s) 444
XapI RAATTY 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.