RchiOBHm_Chr7g0206731
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000416
Physical Location & Seq
Forward (+)
24298092 .. 24299869
1778 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18502

Sequence Viewer

Length: 444 bp
ATGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTAGCAAAGCTTCTAGGATATTGCTCTATAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATGTGAATATATTCCTAATAGGAGCTTAGAAGATCATCTTTTCAACAGGGTTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGCTCGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGTTCTTTTAGAAATCAATGTCAACTTCATTTGGAGGTTGGCAGAATCTTGTTTAAATTGCAATATTGAGAGGACAATTGTGACTCATGGATATGCTGCCCCAGAGTATGTTGAAACAGGCCATCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAAAAGTTCAGCATGATAATAGATCCGCTCCTGAGAGACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

147

Amino Acids

16.75

Weight (kDa)

7.71

Isoelectric Point (pI)

31.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 427
AciI CCGC 1 cut(s) 425
AclWI GGATC 4 cut(s) 76, 89, 176, 416
AfaI GTAC 1 cut(s) 386
AgsI TTSAA 4 cut(s) 8, 142, 154, 356
AhdI GACNNNNNGTC 1 cut(s) 237
AloI GAACNNNNNNTCC 2 cut(s) 228, 260
AluBI AGCT 3 cut(s) 46, 123, 206
AluI AGCT 3 cut(s) 46, 123, 206
Alw26I GTCTC 1 cut(s) 429
AlwI GGATC 4 cut(s) 76, 89, 176, 416
AoxI GGCC 1 cut(s) 361
ApeKI GCWGC 2 cut(s) 197, 338
Asp700I GAANNNNTTC 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 20
BamHI GGATCC 1 cut(s) 81
BauI CACGAG 2 cut(s) 172, 225
BbvI GCAGC 2 cut(s) 184, 325
BccI CCATC 2 cut(s) 62, 372
BceAI ACGGC 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 429
BfaI CTAG 2 cut(s) 38, 50
BfmI CTRYAG 2 cut(s) 63, 390
BisI GCNGC 2 cut(s) 198, 339
BlsI GCNGC 2 cut(s) 199, 340
BmeRI GACNNNNNGTC 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 429
BsaJI CCNNGG 1 cut(s) 164
Bse1I ACTGG 3 cut(s) 238, 242, 439
BseDI CCNNGG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 3 cut(s) 238, 242, 439
BseXI GCAGC 2 cut(s) 184, 325
BshFI GGCC 1 cut(s) 363
BslFI GGGAC 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 429
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 1 cut(s) 363
Bso31I GGTCTC 1 cut(s) 429
Bsp143I GATC 4 cut(s) 81, 130, 168, 421
BspACI CCGC 1 cut(s) 425
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 1 cut(s) 423
BspLI GGNNCC 1 cut(s) 83
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 4 cut(s) 76, 89, 176, 416
BspTNI GGTCTC 1 cut(s) 429
BsrBI CCGCTC 1 cut(s) 427
BsrI ACTGG 3 cut(s) 238, 242, 439
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 4 cut(s) 81, 130, 168, 421
BssSI CACGAG 2 cut(s) 172, 225
BssT1I CCWWGG 1 cut(s) 164
Bst2BI CACGAG 2 cut(s) 172, 225
Bst4CI ACNGT 2 cut(s) 384, 398
Bst6I CTCTTC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 124, 431
BstKTI GATC 4 cut(s) 84, 133, 171, 424
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 4 cut(s) 81, 130, 168, 421
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstSFI CTRYAG 2 cut(s) 63, 390
BstV1I GCAGC 2 cut(s) 184, 325
BstX2I RGATCY 2 cut(s) 81, 421
BstYI RGATCY 2 cut(s) 81, 421
BsuRI GGCC 1 cut(s) 363
Csp6I GTAC 1 cut(s) 385
CviAII CATG 2 cut(s) 329, 412
CviJI RGCY 6 cut(s) 46, 91, 123, 206, 216, 363
CviKI_1 RGCY 6 cut(s) 46, 91, 123, 206, 216, 363
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 2 cut(s) 124, 431
DpnI GATC 4 cut(s) 83, 132, 170, 423
DpnII GATC 4 cut(s) 81, 130, 168, 421
DraI TTTAAA 1 cut(s) 297
DriI GACNNNNNGTC 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 165
Eam1105I GACNNNNNGTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 164
Eco31I GGTCTC 1 cut(s) 429
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 2 cut(s) 332, 415
FaiI YATR 7 cut(s) 65, 100, 108, 330, 336, 351, 413
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FaqI GGGAC 1 cut(s) 244
FatI CATG 2 cut(s) 328, 411
Fnu4HI GCNGC 2 cut(s) 198, 339
Fsp4HI GCNGC 2 cut(s) 198, 339
FspBI CTAG 2 cut(s) 38, 50
GluI GCNGC 2 cut(s) 198, 339
HaeIII GGCC 1 cut(s) 363
Hin1II CATG 2 cut(s) 332, 415
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 2 cut(s) 287, 325
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 2 cut(s) 172, 430
Hpy8I GTNNAC 1 cut(s) 265
HpyCH4III ACNGT 2 cut(s) 384, 398
HpyCH4V TGCA 2 cut(s) 303, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 2 cut(s) 124, 431
Hsp92II CATG 2 cut(s) 332, 415
Kzo9I GATC 4 cut(s) 81, 130, 168, 421
LmnI GCTCC 2 cut(s) 120, 432
LpnPI CCDG 6 cut(s) 130, 219, 255, 345, 357, 402
Lsp1109I GCAGC 2 cut(s) 184, 325
MaeI CTAG 2 cut(s) 38, 50
MaeIII GTNAC 2 cut(s) 177, 322
MalI GATC 4 cut(s) 83, 132, 170, 423
MbiI CCGCTC 1 cut(s) 427
MboI GATC 4 cut(s) 81, 130, 168, 421
MboII GAAGA 2 cut(s) 140, 152
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 2 cut(s) 81, 421
MluCI AATT 3 cut(s) 8, 298, 318
MlyI GAGTC 1 cut(s) 319
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 6 cut(s) 71, 168, 168, 221, 270, 306
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 1 cut(s) 296
MslI CAYNNNNRTG 1 cut(s) 333
MunI CAATTG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 4 cut(s) 81, 130, 168, 421
NlaIII CATG 2 cut(s) 332, 415
NlaIV GGNNCC 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 322
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 2 cut(s) 199, 340
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 83
PstI CTGCAG 1 cut(s) 394
PsuI RGATCY 2 cut(s) 81, 421
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 2 cut(s) 198, 339
Sau3AI GATC 4 cut(s) 81, 130, 168, 421
SchI GAGTC 1 cut(s) 319
SetI ASST 5 cut(s) 48, 125, 179, 208, 281
SfcI CTRYAG 2 cut(s) 63, 390
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 3 cut(s) 8, 298, 318
SsiI CCGC 1 cut(s) 425
SspI AATATT 1 cut(s) 307
SspMI CTAG 2 cut(s) 38, 50
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 2 cut(s) 384, 398
TasI AATT 3 cut(s) 8, 298, 318
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 2 cut(s) 197, 338
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 2 cut(s) 38, 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.