Rw6G009210
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000416
Physical Location & Seq
Reverse (-)
15468640 .. 15471768
3129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G009210.1

Sequence Viewer

Length: 813 bp
ATGAAGTGCATCTTTCCCTTCAAATCCAAGAACAAACAAAAGGAAAGCATACCAGAATTGTACAAGAAGGAGCAGAATTTGAAGGCTTGCTCATTCCAAGAGCTCAGGGATTCAATCAATGGCTTCAGCAGGTTGCAAAAGCTTGGTGATGAGGGTTTGGGAGTGTGTATAAAGGAACAATCAAGCCCAAAAATGGCAAGCGTACTCCACATAGCTTACAGGTTCCAATTCTTATCTTCATTAACTTTAAGGAACTTTAAACTTGCTTGGATCACGAGGTTACAAATAATACTTGGTGCTGCTCAAGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGGTGATCCATCGAAATTTCAAATCTTCCAACGTGCTTTTGGATGAGGACTTTAAGCCGAAGCTTTCAGACTTCGGGCTTCCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCATTGGTAGGGACATATGGATATGCTGCCCCAGAGTATGTTGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTCCTGTATGAGATCCTCACTGGGAGGCCAGTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAAAAGTTCAGCATGATAAGAGATCCACTCCTGAGAGACCAGTATTGTATTAATGCAGGTCGGAAAATTGCCAAGTTGGCAGATAGCTTAGAGATCTTGAAGCAAGCTATACAAGATTCACAAAAGGGTACCAACACTGTAAATAATAATTTTGGGGCATCTGGGTCTAAATTGGGTAGAAGAGCCCCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

270

Amino Acids

30.42

Weight (kDa)

9.5

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 53 - 192 4.5e-24 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 95 - 197 9.1e-24 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 120, 665
Acc65I GGTACC 1 cut(s) 746
AccB1I GGYRCC 1 cut(s) 746
AclWI GGATC 4 cut(s) 278, 340, 559, 635
AcsI RAATTY 2 cut(s) 76, 355
AcuI CTGAAG 1 cut(s) 109
AfaI GTAC 5 cut(s) 62, 204, 448, 605, 748
AfiI CCNNNNNNNGG 2 cut(s) 193, 428
AgsI TTSAA 6 cut(s) 22, 82, 114, 361, 506, 718
AhdI GACNNNNNGTC 1 cut(s) 335
AjnI CCWGG 1 cut(s) 339
AluBI AGCT 6 cut(s) 103, 142, 215, 403, 705, 725
AluI AGCT 6 cut(s) 103, 142, 215, 403, 705, 725
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 648
AlwI GGATC 4 cut(s) 278, 340, 559, 635
AoxI GGCC 3 cut(s) 431, 511, 578
ApeKI GCWGC 2 cut(s) 299, 488
ApoI RAATTY 2 cut(s) 76, 355
AseI ATTAAT 1 cut(s) 669
Asp718I GGTACC 1 cut(s) 746
AspS9I GGNCC 2 cut(s) 431, 553
AsuHPI GGTGA 3 cut(s) 158, 355, 452
AvaII GGWCC 1 cut(s) 553
BaeI ACNNNNGTAYC 2 cut(s) 438, 471
BanI GGYRCC 1 cut(s) 746
BanII GRGCYC 2 cut(s) 105, 805
BauI CACGAG 2 cut(s) 274, 323
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 286, 475
BccI CCATC 3 cut(s) 357, 522, 530
BciT130I CCWGG 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 648
BfaI CTAG 1 cut(s) 423
BfmI CTRYAG 1 cut(s) 609
BfuAI ACCTGC 2 cut(s) 120, 665
BglI GCCNNNNNGGC 1 cut(s) 695
BglII AGATCT 1 cut(s) 711
BisI GCNGC 2 cut(s) 300, 489
BlsI GCNGC 2 cut(s) 301, 490
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 1 cut(s) 553
BmeRI GACNNNNNGTC 1 cut(s) 335
BmgT120I GGNCC 2 cut(s) 431, 553
BmiI GGNNCC 2 cut(s) 224, 748
BmrFI CCNGG 1 cut(s) 341
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 2 cut(s) 18, 785
BmuI ACTGGG 1 cut(s) 582
BplI GAGNNNNNCTC 2 cut(s) 630, 662
Bpu10I CCTNAGC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 648
BsaXI ACNNNNNCTCC 2 cut(s) 532, 562
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 428
Bse1I ACTGG 4 cut(s) 336, 577, 581, 658
BseBI CCWGG 1 cut(s) 341
BseGI GGATG 2 cut(s) 388, 522
BseLI CCNNNNNNNGG 2 cut(s) 193, 428
BseMII CTCAG 2 cut(s) 118, 641
BseNI ACTGG 4 cut(s) 336, 577, 581, 658
BseXI GCAGC 2 cut(s) 286, 475
BshFI GGCC 3 cut(s) 433, 513, 580
BshNI GGYRCC 1 cut(s) 746
BsiHKAI GWGCWC 1 cut(s) 105
BslFI GGGAC 2 cut(s) 342, 487
BslI CCNNNNNNNGG 2 cut(s) 193, 428
BsmAI GTCTC 1 cut(s) 648
BsmFI GGGAC 2 cut(s) 342, 487
BsnI GGCC 3 cut(s) 433, 513, 580
Bso31I GGTCTC 1 cut(s) 648
Bsp1286I GDGCHC 2 cut(s) 105, 805
Bsp1407I TGTACA 1 cut(s) 60
Bsp143I GATC 5 cut(s) 270, 345, 564, 640, 711
BspANI GGCC 3 cut(s) 433, 513, 580
BspCNI CTCAG 2 cut(s) 117, 642
BspLI GGNNCC 2 cut(s) 224, 748
BspMAI CTGCAG 1 cut(s) 613
BspMI ACCTGC 2 cut(s) 120, 665
BspPI GGATC 4 cut(s) 278, 340, 559, 635
BspQI GCTCTTC 1 cut(s) 793
BspT107I GGYRCC 1 cut(s) 746
BspTNI GGTCTC 1 cut(s) 648
BsrGI TGTACA 1 cut(s) 60
BsrI ACTGG 4 cut(s) 336, 577, 581, 658
BssMI GATC 5 cut(s) 270, 345, 564, 640, 711
BssSI CACGAG 2 cut(s) 274, 323
Bst2BI CACGAG 2 cut(s) 274, 323
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 4 cut(s) 446, 603, 617, 757
Bst6I CTCTTC 1 cut(s) 793
BstAUI TGTACA 1 cut(s) 60
BstC8I GCNNGC 3 cut(s) 88, 199, 723
BstDEI CTNAG 3 cut(s) 104, 650, 706
BstEII GGTNACC 1 cut(s) 440
BstENI CCTNNNNNAGG 1 cut(s) 426
BstF5I GGATG 2 cut(s) 388, 522
BstKTI GATC 5 cut(s) 273, 348, 567, 643, 714
BstMAI GTCTC 1 cut(s) 648
BstMBI GATC 5 cut(s) 270, 345, 564, 640, 711
BstMWI GCNNNNNNNGC 1 cut(s) 695
BstNI CCWGG 1 cut(s) 341
BstPI GGTNACC 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 339
BstSFI CTRYAG 1 cut(s) 609
BstV1I GCAGC 2 cut(s) 286, 475
BstX2I RGATCY 3 cut(s) 564, 640, 711
BstYI RGATCY 3 cut(s) 564, 640, 711
BsuRI GGCC 3 cut(s) 433, 513, 580
BtsCI GGATG 2 cut(s) 388, 522
BtsIMutI CAGTG 2 cut(s) 570, 753
BveI ACCTGC 2 cut(s) 120, 665
Cac8I GCNNGC 3 cut(s) 88, 199, 723
Cfr13I GGNCC 2 cut(s) 431, 553
Csp6I GTAC 5 cut(s) 61, 203, 447, 604, 747
CviAII CATG 2 cut(s) 452, 631
CviQI GTAC 5 cut(s) 61, 203, 447, 604, 747
DdeI CTNAG 3 cut(s) 104, 650, 706
DpnI GATC 5 cut(s) 272, 347, 566, 642, 713
DpnII GATC 5 cut(s) 270, 345, 564, 640, 711
DraI TTTAAA 1 cut(s) 259
DriI GACNNNNNGTC 1 cut(s) 335
Eam1104I CTCTTC 1 cut(s) 793
Eam1105I GACNNNNNGTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 793
Ecl136II GAGCTC 1 cut(s) 103
Eco24I GRGCYC 2 cut(s) 105, 805
Eco31I GGTCTC 1 cut(s) 648
Eco47I GGWCC 1 cut(s) 553
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 109
Eco91I GGTNACC 1 cut(s) 440
EcoICRI GAGCTC 1 cut(s) 103
EcoNI CCTNNNNNAGG 1 cut(s) 426
EcoO65I GGTNACC 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 339
EcoT38I GRGCYC 2 cut(s) 105, 805
FaeI CATG 2 cut(s) 455, 634
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 2 cut(s) 342, 487
FatI CATG 2 cut(s) 451, 630
FauNDI CATATG 1 cut(s) 478
Fnu4HI GCNGC 2 cut(s) 300, 489
FokI GGATG 2 cut(s) 395, 509
FriOI GRGCYC 2 cut(s) 105, 805
Fsp4HI GCNGC 2 cut(s) 300, 489
FspBI CTAG 1 cut(s) 423
GluI GCNGC 2 cut(s) 300, 489
HaeIII GGCC 3 cut(s) 433, 513, 580
Hin1II CATG 2 cut(s) 455, 634
HindIII AAGCTT 2 cut(s) 140, 401
HinfI GANTC 2 cut(s) 110, 734
HphI GGTGA 3 cut(s) 158, 355, 452
Hpy188I TCNGA 2 cut(s) 409, 681
Hpy188III TCNNGA 3 cut(s) 274, 649, 715
HpyAV CCTTC 4 cut(s) 28, 61, 76, 422
HpyCH4III ACNGT 4 cut(s) 446, 603, 617, 757
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 4 cut(s) 9, 136, 611, 674
HpyF10VI GCNNNNNNNGC 1 cut(s) 695
HpyF3I CTNAG 3 cut(s) 104, 650, 706
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 2 cut(s) 455, 634
KpnI GGTACC 1 cut(s) 750
Kzo9I GATC 5 cut(s) 270, 345, 564, 640, 711
LguI GCTCTTC 1 cut(s) 793
LmnI GCTCC 1 cut(s) 70
Lsp1109I GCAGC 2 cut(s) 286, 475
LweI GCATC 2 cut(s) 18, 785
MaeI CTAG 1 cut(s) 423
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 3 cut(s) 279, 440, 530
MalI GATC 5 cut(s) 272, 347, 566, 642, 713
MboI GATC 5 cut(s) 270, 345, 564, 640, 711
MboII GAAGA 3 cut(s) 228, 357, 810
MflI RGATCY 3 cut(s) 564, 640, 711
MhlI GDGCHC 2 cut(s) 105, 805
MluCI AATT 7 cut(s) 56, 76, 227, 355, 684, 766, 788
MmeI TCCRAC 2 cut(s) 393, 659
MnlI CCTC 6 cut(s) 145, 270, 319, 379, 570, 578
MseI TTAA 5 cut(s) 242, 248, 258, 393, 669
MspR9I CCNGG 1 cut(s) 341
MvaI CCWGG 1 cut(s) 341
MwoI GCNNNNNNNGC 1 cut(s) 695
NdeI CATATG 1 cut(s) 478
NdeII GATC 5 cut(s) 270, 345, 564, 640, 711
NlaIII CATG 2 cut(s) 455, 634
NlaIV GGNNCC 2 cut(s) 224, 748
NmuCI GTSAC 2 cut(s) 440, 530
PciSI GCTCTTC 1 cut(s) 793
PfeI GAWTC 2 cut(s) 110, 734
PkrI GCNGC 2 cut(s) 301, 490
PshBI ATTAAT 1 cut(s) 669
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 339
PspEI GGTNACC 1 cut(s) 440
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 224, 748
PspPI GGNCC 2 cut(s) 431, 553
PstI CTGCAG 1 cut(s) 613
PsuI RGATCY 3 cut(s) 564, 640, 711
RsaI GTAC 5 cut(s) 62, 204, 448, 605, 748
RsaNI GTAC 5 cut(s) 61, 203, 447, 604, 747
SacI GAGCTC 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 793
SaqAI TTAA 5 cut(s) 242, 248, 258, 393, 669
SatI GCNGC 2 cut(s) 300, 489
Sau3AI GATC 5 cut(s) 270, 345, 564, 640, 711
Sau96I GGNCC 2 cut(s) 431, 553
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 2 cut(s) 105, 805
SfaNI GCATC 2 cut(s) 18, 785
SfcI CTRYAG 1 cut(s) 609
SinI GGWCC 1 cut(s) 553
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 7 cut(s) 56, 76, 227, 355, 684, 766, 788
SspMI CTAG 1 cut(s) 423
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 339
TaaI ACNGT 4 cut(s) 446, 603, 617, 757
TaiI ACGT 1 cut(s) 375
TaqI TCGA 2 cut(s) 352, 458
TasI AATT 7 cut(s) 56, 76, 227, 355, 684, 766, 788
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 2 cut(s) 110, 734
Tru1I TTAA 5 cut(s) 242, 248, 258, 393, 669
Tru9I TTAA 5 cut(s) 242, 248, 258, 393, 669
TscAI CASTG 2 cut(s) 577, 760
TseFI GTSAC 2 cut(s) 440, 530
TseI GCWGC 2 cut(s) 299, 488
Tsp45I GTSAC 2 cut(s) 440, 530
TspDTI ATGAA 2 cut(s) 17, 228
TspRI CASTG 2 cut(s) 577, 760
VpaK11BI GGWCC 1 cut(s) 553
VspI ATTAAT 1 cut(s) 669
XagI CCTNNNNNAGG 1 cut(s) 426
XapI RAATTY 2 cut(s) 76, 355
XcmI CCANNNNNNNNNTGG 2 cut(s) 376, 588
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.