Rorug05G0590200
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000416
Physical Location & Seq
Forward (+)
78831489 .. 78832586
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0590200.1

Sequence Viewer

Length: 1098 bp
ATGTCTGGGAACACAGGCCCAGGTGATGGTTCCAAGGAGAATGGATCTGATGATTCCAAGAAGGATAACTCTGATGGTTCTCGAAGGAATCCTTTCTCGATGATGAGGCGTGGCTTTCGTAACTTTCGTCTTCCCTCTTCTTTGCCTGCAGTCTTTGGAGTGCCACCACGTGTTCACTTTCGTGGCTTTGGACTTCTCTCTTATTTCCCCATCTTTGGAGTGCCACCAAATGTTCACCCTCGTAGCCAAGAACGGAATGCAGTTAACAATCAAGAAGAGCAGCCATTGAGTTTCCCTCGTAGTGGAGACAGAGCGATACGTCTCCGACGTAACTTGAGGAGGCTGTGGTTCTTTGCCCCAGTACTCACACTGCTTTCTGTTGGCGGGGCGGTATACTATTCTGGGATCAGCTGGTCCGATTTTGAAGCCCCCTTTGTATCTGAACTCCAACTTTCCACACGGTCCCCTGTTAGCGTATTCTCACTGATCACGGGAGACACATCTTCCATCGTTTCGGCTGTCTCAAACCGGGTAACTTCTATCCTAGCTTCTGTGTTTGTTGTACCTCCTAACTCTCGGGGCTTTTACAGGGTAGTCATGTCTTGGTTGAGGTTCTTGTGCTTTAATTTTCTCTCCCTGTCACCTAGAATGCAGATTGTTGCTGTCTGTATTGTCCATCTGTTATGTGTCATCACGATGCATCAGATTCTCTCTCTTGGGTGGGGTGCTAGTTCATATTTGCTTAATCGTTTGTATGACTTGCTCTTGAGTGCCCTAAGCTACCTATTCCCTACTTTCTTTCCTCCACCTCCTCCTGCCCAAATTAATGTTCCCACTTCCTATCACTCTTCTGTCACATATCACGGTCCCGTTTCCTTTCACGGACCTGTGAGGTTTCTTTCATCTGTTTATGTGGGTGACAATCTTATTGCAAATGGGGAGCTCAATGGCGATATTGCAAATGAGGAGCTCAATGGCGATATTGCAAATGGGGAGCACAATGGCGTTATTGCTAATGGGGAGCTCAATGGCGATATTGCAAATGAGGAGCACAATGGCGATCTCAATGGGAATCTGAATGGGGCTCAGACTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

365

Amino Acids

40.07

Weight (kDa)

7.13

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 26
AccI GTMKAC 1 cut(s) 393
AciI CCGC 2 cut(s) 384, 389
AclWI GGATC 2 cut(s) 52, 413
AcvI CACGTG 1 cut(s) 170
AdeI CACNNNGTG 1 cut(s) 170
AfaI GTAC 2 cut(s) 363, 564
AfiI CCNNNNNNNGG 3 cut(s) 26, 215, 302
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 1 cut(s) 425
AjnI CCWGG 1 cut(s) 19
AjuI GAANNNNNNNTTGG 2 cut(s) 813, 845
AleI CACNNNNGTG 1 cut(s) 180
AluBI AGCT 6 cut(s) 411, 548, 780, 943, 970, 1024
AluI AGCT 6 cut(s) 411, 548, 780, 943, 970, 1024
Alw21I GWGCWC 5 cut(s) 945, 972, 999, 1026, 1053
Alw26I GTCTC 4 cut(s) 300, 326, 489, 526
AlwI GGATC 2 cut(s) 52, 413
Ama87I CYCGRG 1 cut(s) 576
AoxI GGCC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 280
AseI ATTAAT 1 cut(s) 825
Asp700I GAANNNNTTC 1 cut(s) 92
AspS9I GGNCC 5 cut(s) 17, 414, 462, 866, 884
AsuC2I CCSGG 1 cut(s) 530
AsuHPI GGTGA 4 cut(s) 35, 227, 633, 929
AvaI CYCGRG 1 cut(s) 576
AvaII GGWCC 4 cut(s) 414, 462, 866, 884
BaeGI GKGCMC 1 cut(s) 775
BanII GRGCYC 4 cut(s) 945, 972, 1026, 1087
BbrPI CACGTG 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 5 cut(s) 945, 972, 999, 1026, 1053
BbvI GCAGC 1 cut(s) 292
BccI CCATC 5 cut(s) 20, 68, 218, 515, 684
BciT130I CCWGG 1 cut(s) 21
BclI TGATCA 1 cut(s) 486
BcnI CCSGG 1 cut(s) 530
BcoDI GTCTC 4 cut(s) 300, 326, 489, 526
BfaI CTAG 3 cut(s) 545, 645, 729
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
BmcAI AGTACT 1 cut(s) 363
Bme1390I CCNGG 2 cut(s) 21, 530
Bme18I GGWCC 4 cut(s) 414, 462, 866, 884
BmeT110I CYCGRG 1 cut(s) 576
BmgT120I GGNCC 5 cut(s) 17, 414, 462, 866, 884
BmiI GGNNCC 3 cut(s) 31, 464, 868
BmrFI CCNGG 2 cut(s) 21, 530
BmrI ACTGGG 1 cut(s) 353
BmsI GCATC 2 cut(s) 687, 709
BmuI ACTGGG 1 cut(s) 353
BpiI GAAGAC 1 cut(s) 122
BplI GAGNNNNNCTC 2 cut(s) 280, 312
Bpu10I CCTNAGC 1 cut(s) 776
BpuEI CTTGAG 2 cut(s) 355, 787
BpuMI CCSGG 1 cut(s) 530
BsaAI YACGTR 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 19, 33
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 215, 302
Bse1I ACTGG 1 cut(s) 359
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 19, 33
BseLI CCNNNNNNNGG 3 cut(s) 26, 215, 302
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 4 cut(s) 352, 801, 980, 1061
BseSI GKGCMC 1 cut(s) 775
BseXI GCAGC 1 cut(s) 292
BshFI GGCC 1 cut(s) 18
BsiHKAI GWGCWC 5 cut(s) 945, 972, 999, 1026, 1053
BsiHKCI CYCGRG 1 cut(s) 576
BsiSI CCGG 1 cut(s) 529
BslFI GGGAC 2 cut(s) 448, 852
BslI CCNNNNNNNGG 3 cut(s) 26, 215, 302
BsmAI GTCTC 4 cut(s) 300, 326, 489, 526
BsmBI CGTCTC 1 cut(s) 326
BsmFI GGGAC 2 cut(s) 448, 852
BsmI GAATGC 2 cut(s) 262, 654
BsnI GGCC 1 cut(s) 18
BsoBI CYCGRG 1 cut(s) 576
Bsp1286I GDGCHC 7 cut(s) 775, 945, 972, 999, 1026, 1053, 1087
Bsp143I GATC 4 cut(s) 44, 405, 486, 1060
BspACI CCGC 2 cut(s) 384, 389
BspANI GGCC 1 cut(s) 18
BspLI GGNNCC 3 cut(s) 31, 464, 868
BspMAI CTGCAG 1 cut(s) 151
BspPI GGATC 2 cut(s) 52, 413
BspQI GCTCTTC 1 cut(s) 270
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 19, 33
BssMI GATC 4 cut(s) 44, 405, 486, 1060
BssNAI GTATAC 1 cut(s) 394
BssT1I CCWWGG 1 cut(s) 33
Bst1107I GTATAC 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 462, 866
Bst6I CTCTTC 3 cut(s) 142, 270, 853
BstBAI YACGTR 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 776, 1086
BstKTI GATC 4 cut(s) 47, 408, 489, 1063
BstMAI GTCTC 4 cut(s) 300, 326, 489, 526
BstMBI GATC 4 cut(s) 44, 405, 486, 1060
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 2 cut(s) 19, 528
BstSFI CTRYAG 1 cut(s) 147
BstSLI GKGCMC 1 cut(s) 775
BstV1I GCAGC 1 cut(s) 292
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BstZ17I GTATAC 1 cut(s) 394
BsuRI GGCC 1 cut(s) 18
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 2 cut(s) 368, 482
Cac8I GCNNGC 1 cut(s) 147
Cfr13I GGNCC 5 cut(s) 17, 414, 462, 866, 884
Csp6I GTAC 2 cut(s) 362, 563
CviAII CATG 1 cut(s) 598
CviQI GTAC 2 cut(s) 362, 563
DdeI CTNAG 2 cut(s) 776, 1086
DpnI GATC 4 cut(s) 46, 407, 488, 1062
DpnII GATC 4 cut(s) 44, 405, 486, 1060
DraIII CACNNNGTG 1 cut(s) 170
Eam1104I CTCTTC 3 cut(s) 142, 270, 853
EarI CTCTTC 3 cut(s) 142, 270, 853
Ecl136II GAGCTC 3 cut(s) 943, 970, 1024
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 4 cut(s) 945, 972, 1026, 1087
Eco47I GGWCC 4 cut(s) 414, 462, 866, 884
Eco53kI GAGCTC 3 cut(s) 943, 970, 1024
Eco72I CACGTG 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 576
EcoICRI GAGCTC 3 cut(s) 943, 970, 1024
EcoRII CCWGG 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 702
EcoT38I GRGCYC 4 cut(s) 945, 972, 1026, 1087
ErhI CCWWGG 1 cut(s) 33
Esp3I CGTCTC 1 cut(s) 326
FaeI CATG 1 cut(s) 601
FaiI YATR 7 cut(s) 394, 599, 685, 736, 756, 859, 912
FalI AAGNNNNNCTT 2 cut(s) 76, 108
FaqI GGGAC 2 cut(s) 448, 852
FatI CATG 1 cut(s) 597
FauI CCCGC 1 cut(s) 377
FbaI TGATCA 1 cut(s) 486
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 1 cut(s) 281
FriOI GRGCYC 4 cut(s) 945, 972, 1026, 1087
Fsp4HI GCNGC 1 cut(s) 281
FspBI CTAG 3 cut(s) 545, 645, 729
GluI GCNGC 1 cut(s) 281
HaeIII GGCC 1 cut(s) 18
HapII CCGG 1 cut(s) 529
Hin1II CATG 1 cut(s) 601
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 4 cut(s) 53, 88, 706, 1072
HpaI GTTAAC 1 cut(s) 265
HpaII CCGG 1 cut(s) 529
HphI GGTGA 4 cut(s) 35, 227, 633, 929
Hpy166II GTNNAC 4 cut(s) 175, 235, 265, 394
Hpy188I TCNGA 8 cut(s) 49, 73, 326, 418, 442, 705, 1077, 1089
Hpy188III TCNNGA 5 cut(s) 81, 97, 272, 694, 766
Hpy8I GTNNAC 4 cut(s) 175, 235, 265, 394
Hpy99I CGWCG 1 cut(s) 330
HpyAV CCTTC 2 cut(s) 55, 78
HpyCH4III ACNGT 2 cut(s) 462, 866
HpyCH4IV ACGT 3 cut(s) 169, 319, 328
HpyCH4V TGCA 8 cut(s) 149, 260, 652, 700, 932, 959, 986, 1040
HpyF3I CTNAG 2 cut(s) 776, 1086
HpySE526I ACGT 3 cut(s) 169, 319, 328
Hsp92II CATG 1 cut(s) 601
Ksp22I TGATCA 1 cut(s) 486
KspAI GTTAAC 1 cut(s) 265
Kzo9I GATC 4 cut(s) 44, 405, 486, 1060
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 5 cut(s) 940, 967, 994, 1021, 1048
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 2 cut(s) 687, 709
MaeI CTAG 3 cut(s) 545, 645, 729
MaeII ACGT 3 cut(s) 169, 319, 328
MaeIII GTNAC 6 cut(s) 119, 329, 532, 639, 853, 917
MalI GATC 4 cut(s) 46, 407, 488, 1062
MboI GATC 4 cut(s) 44, 405, 486, 1060
MboII GAAGA 5 cut(s) 122, 129, 287, 495, 840
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 7 cut(s) 775, 945, 972, 999, 1026, 1053, 1087
MluCI AATT 2 cut(s) 625, 822
MmeI TCCRAC 2 cut(s) 349, 472
Mph1103I ATGCAT 1 cut(s) 702
MroXI GAANNNNTTC 1 cut(s) 92
MseI TTAA 4 cut(s) 264, 624, 744, 825
MslI CAYNNNNRTG 2 cut(s) 180, 695
MspA1I CMGCKG 1 cut(s) 411
MspI CCGG 1 cut(s) 529
MspR9I CCNGG 2 cut(s) 21, 530
Mva1269I GAATGC 2 cut(s) 262, 654
MvaI CCWGG 1 cut(s) 21
NciI CCSGG 1 cut(s) 530
NdeII GATC 4 cut(s) 44, 405, 486, 1060
NlaIII CATG 1 cut(s) 601
NlaIV GGNNCC 3 cut(s) 31, 464, 868
NmuCI GTSAC 3 cut(s) 639, 853, 917
NsiI ATGCAT 1 cut(s) 702
OliI CACNNNNGTG 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 270
PcsI WCGNNNNNNNCGW 2 cut(s) 124, 325
PctI GAATGC 2 cut(s) 262, 654
PdmI GAANNNNTTC 1 cut(s) 92
PfeI GAWTC 4 cut(s) 53, 88, 706, 1072
PflMI CCANNNNNTGG 1 cut(s) 26
PkrI GCNGC 1 cut(s) 282
PmaCI CACGTG 1 cut(s) 170
PmlI CACGTG 1 cut(s) 170
Ppu21I YACGTR 1 cut(s) 170
PshBI ATTAAT 1 cut(s) 825
Psp124BI GAGCTC 3 cut(s) 945, 972, 1026
Psp6I CCWGG 1 cut(s) 19
PspCI CACGTG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 3 cut(s) 31, 464, 868
PspPI GGNCC 5 cut(s) 17, 414, 462, 866, 884
PstI CTGCAG 1 cut(s) 151
PsuI RGATCY 1 cut(s) 44
PvuII CAGCTG 1 cut(s) 411
RsaI GTAC 2 cut(s) 363, 564
RsaNI GTAC 2 cut(s) 362, 563
RseI CAYNNNNRTG 2 cut(s) 180, 695
SacI GAGCTC 3 cut(s) 945, 972, 1026
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 4 cut(s) 264, 624, 744, 825
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 4 cut(s) 44, 405, 486, 1060
Sau96I GGNCC 5 cut(s) 17, 414, 462, 866, 884
ScaI AGTACT 1 cut(s) 363
ScrFI CCNGG 2 cut(s) 21, 530
SduI GDGCHC 7 cut(s) 775, 945, 972, 999, 1026, 1053, 1087
SfaNI GCATC 2 cut(s) 687, 709
SfcI CTRYAG 1 cut(s) 147
SinI GGWCC 4 cut(s) 414, 462, 866, 884
SmiMI CAYNNNNRTG 2 cut(s) 180, 695
SmlI CTYRAG 2 cut(s) 334, 766
SmoI CTYRAG 2 cut(s) 334, 766
Sse9I AATT 2 cut(s) 625, 822
SsiI CCGC 2 cut(s) 384, 389
SspMI CTAG 3 cut(s) 545, 645, 729
SstI GAGCTC 3 cut(s) 945, 972, 1026
StyD4I CCNGG 2 cut(s) 19, 528
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 2 cut(s) 462, 866
TaiI ACGT 3 cut(s) 172, 322, 331
TaqI TCGA 2 cut(s) 82, 98
TasI AATT 2 cut(s) 625, 822
TatI WGTACW 1 cut(s) 361
TfiI GAWTC 4 cut(s) 53, 88, 706, 1072
Tru1I TTAA 4 cut(s) 264, 624, 744, 825
Tru9I TTAA 4 cut(s) 264, 624, 744, 825
TscAI CASTG 2 cut(s) 375, 489
TseFI GTSAC 3 cut(s) 639, 853, 917
TseI GCWGC 1 cut(s) 280
Tsp45I GTSAC 3 cut(s) 639, 853, 917
TspDTI ATGAA 2 cut(s) 723, 891
TspGWI ACGGA 2 cut(s) 268, 897
TspRI CASTG 2 cut(s) 375, 489
Van91I CCANNNNNTGG 1 cut(s) 26
VpaK11BI GGWCC 4 cut(s) 414, 462, 866, 884
VspI ATTAAT 1 cut(s) 825
XmiI GTMKAC 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 92
XspI CTAG 3 cut(s) 545, 645, 729
ZrmI AGTACT 1 cut(s) 363
Zsp2I ATGCAT 1 cut(s) 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.