RCHIOBHM_CHR0C22G0500461
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0000416
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 657 bp
ATGGGCAGGGTCGAGATGGGCTTTTCTGCGGGCCGGGCCGGGCTTTTGCCCACTGGGCCGGGCGGGCGCCCATGGGCTTTTAGGCCCGCGGGCCAAATGATGACCCCTACACATAGCTTACAGGGTCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTGTAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATATGAATATATGCCTAATAGGAGCTTAGAGGATCATCTTTTCAGCAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGTTGCTGCTCAAGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGGTGATATATCAAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCAGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCAGTGGTAGGGACTTATGGATATGCTGCGCTAGAGTATGTCGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTGCTGTATGAGATCCTCACTGGGAGGCGTGTCTTAGAAAGGCACCGGCCAATAGCGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

218

Amino Acids

24.48

Weight (kDa)

6.76

Isoelectric Point (pI)

25.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 66, 636
AccII CGCG 1 cut(s) 89
AciI CCGC 5 cut(s) 29, 63, 87, 89, 650
AclWI GGATC 5 cut(s) 220, 233, 282, 320, 601
AcoI YGGCCR 1 cut(s) 641
AcuI CTGAAG 1 cut(s) 439
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 1 cut(s) 490
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 3 cut(s) 152, 298, 403
AhdI GACNNNNNGTC 1 cut(s) 377
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 4 cut(s) 117, 190, 267, 445
AluI AGCT 4 cut(s) 117, 190, 267, 445
Alw21I GWGCWC 1 cut(s) 420
AlwI GGATC 5 cut(s) 220, 233, 282, 320, 601
AoxI GGCC 8 cut(s) 31, 36, 56, 83, 91, 473, 553, 641
ApeKI GCWGC 2 cut(s) 341, 530
AspLEI GCGC 2 cut(s) 69, 535
AspS9I GGNCC 6 cut(s) 31, 36, 56, 84, 91, 473
AsuC2I CCSGG 3 cut(s) 35, 40, 60
AsuHPI GGTGA 3 cut(s) 164, 397, 494
BaeI ACNNNNGTAYC 2 cut(s) 480, 513
BamHI GGATCC 1 cut(s) 225
BanI GGYRCC 2 cut(s) 66, 636
BauI CACGAG 2 cut(s) 316, 365
Bbv12I GWGCWC 1 cut(s) 420
BbvI GCAGC 2 cut(s) 328, 517
BccI CCATC 4 cut(s) 10, 206, 564, 572
BceAI ACGGC 1 cut(s) 248
BciT130I CCWGG 1 cut(s) 383
BcnI CCSGG 3 cut(s) 35, 40, 60
BfaI CTAG 3 cut(s) 194, 465, 536
BfmI CTRYAG 1 cut(s) 207
BfoI RGCGCY 1 cut(s) 70
BglI GCCNNNNNGGC 2 cut(s) 55, 64
BisI GCNGC 2 cut(s) 342, 531
BlsI GCNGC 2 cut(s) 343, 532
Bme1390I CCNGG 4 cut(s) 35, 40, 60, 383
BmeRI GACNNNNNGTC 1 cut(s) 377
BmgT120I GGNCC 6 cut(s) 31, 36, 56, 84, 91, 473
BmiI GGNNCC 3 cut(s) 68, 227, 638
BmrFI CCNGG 4 cut(s) 35, 40, 60, 383
BmrI ACTGGG 2 cut(s) 63, 624
BmuI ACTGGG 2 cut(s) 63, 624
BpuEI CTTGAG 1 cut(s) 330
BpuMI CCSGG 3 cut(s) 35, 40, 60
BsaHI GRCGYC 1 cut(s) 67
BsaJI CCNNGG 3 cut(s) 71, 87, 308
BsaXI ACNNNNNCTCC 2 cut(s) 574, 604
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse118I RCCGGY 1 cut(s) 639
Bse1I ACTGG 3 cut(s) 58, 378, 619
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 3 cut(s) 71, 87, 308
BseGI GGATG 2 cut(s) 430, 564
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 3 cut(s) 58, 378, 619
BseXI GCAGC 2 cut(s) 328, 517
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 8 cut(s) 33, 38, 58, 85, 93, 475, 555, 643
BshNI GGYRCC 2 cut(s) 66, 636
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 4 cut(s) 34, 39, 59, 640
BslFI GGGAC 2 cut(s) 384, 529
BslI CCNNNNNNNGG 1 cut(s) 181
BsmFI GGGAC 2 cut(s) 384, 529
BsnI GGCC 8 cut(s) 33, 38, 58, 85, 93, 475, 555, 643
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 4 cut(s) 225, 274, 312, 606
Bsp19I CCATGG 1 cut(s) 71
BspACI CCGC 5 cut(s) 29, 63, 87, 89, 650
BspANI GGCC 8 cut(s) 33, 38, 58, 85, 93, 475, 555, 643
BspCNI CTCAG 1 cut(s) 461
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 3 cut(s) 68, 227, 638
BspPI GGATC 5 cut(s) 220, 233, 282, 320, 601
BspT107I GGYRCC 2 cut(s) 66, 636
BsrFI RCCGGY 1 cut(s) 639
BsrI ACTGG 3 cut(s) 58, 378, 619
BssAI RCCGGY 1 cut(s) 639
BssECI CCNNGG 3 cut(s) 71, 87, 308
BssMI GATC 4 cut(s) 225, 274, 312, 606
BssNI GRCGYC 1 cut(s) 67
BssSI CACGAG 2 cut(s) 316, 365
BssT1I CCWWGG 2 cut(s) 71, 308
Bst2BI CACGAG 2 cut(s) 316, 365
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 1 cut(s) 67
BstC8I GCNNGC 6 cut(s) 31, 65, 87, 91, 141, 462
BstDEI CTNAG 3 cut(s) 268, 448, 628
BstDSI CCRYGG 2 cut(s) 71, 87
BstEII GGTNACC 1 cut(s) 482
BstF5I GGATG 2 cut(s) 430, 564
BstFNI CGCG 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 2 cut(s) 69, 535
BstKTI GATC 4 cut(s) 228, 277, 315, 609
BstMBI GATC 4 cut(s) 225, 274, 312, 606
BstMWI GCNNNNNNNGC 3 cut(s) 35, 55, 64
BstNI CCWGG 1 cut(s) 383
BstPI GGTNACC 1 cut(s) 482
BstSCI CCNGG 4 cut(s) 33, 38, 58, 381
BstSFI CTRYAG 1 cut(s) 207
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 328, 517
BstX2I RGATCY 2 cut(s) 225, 606
BstYI RGATCY 2 cut(s) 225, 606
BsuRI GGCC 8 cut(s) 33, 38, 58, 85, 93, 475, 555, 643
BtgI CCRYGG 2 cut(s) 71, 87
BtsCI GGATG 2 cut(s) 430, 564
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 3 cut(s) 51, 513, 612
Cac8I GCNNGC 6 cut(s) 31, 65, 87, 91, 141, 462
CfoI GCGC 2 cut(s) 69, 535
Cfr10I RCCGGY 1 cut(s) 639
Cfr13I GGNCC 6 cut(s) 31, 36, 56, 84, 91, 473
Cfr42I CCGCGG 1 cut(s) 90
Csp6I GTAC 1 cut(s) 489
CviAII CATG 2 cut(s) 72, 494
CviQI GTAC 1 cut(s) 489
DdeI CTNAG 3 cut(s) 268, 448, 628
DinI GGCGCC 1 cut(s) 68
DpnI GATC 4 cut(s) 227, 276, 314, 608
DpnII GATC 4 cut(s) 225, 274, 312, 606
DriI GACNNNNNGTC 1 cut(s) 377
EaeI YGGCCR 1 cut(s) 641
Eam1104I CTCTTC 1 cut(s) 309
Eam1105I GACNNNNNGTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 309
Eco130I CCWWGG 2 cut(s) 71, 308
Eco57I CTGAAG 1 cut(s) 439
Eco91I GGTNACC 1 cut(s) 482
EcoO65I GGTNACC 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 381
EcoT14I CCWWGG 2 cut(s) 71, 308
EgeI GGCGCC 1 cut(s) 68
EheI GGCGCC 1 cut(s) 68
ErhI CCWWGG 2 cut(s) 71, 308
FaeI CATG 2 cut(s) 75, 497
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FaqI GGGAC 2 cut(s) 384, 529
FatI CATG 2 cut(s) 71, 493
FauI CCCGC 4 cut(s) 22, 56, 82, 94
Fnu4HI GCNGC 2 cut(s) 342, 531
FokI GGATG 2 cut(s) 437, 551
Fsp4HI GCNGC 2 cut(s) 342, 531
FspBI CTAG 3 cut(s) 194, 465, 536
GlaI GCGC 2 cut(s) 68, 534
GluI GCNGC 2 cut(s) 342, 531
HaeII RGCGCY 1 cut(s) 70
HaeIII GGCC 8 cut(s) 33, 38, 58, 85, 93, 475, 555, 643
HapII CCGG 4 cut(s) 34, 39, 59, 640
HhaI GCGC 2 cut(s) 69, 535
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 2 cut(s) 75, 497
Hin6I GCGC 2 cut(s) 67, 533
HinP1I GCGC 2 cut(s) 67, 533
HindIII AAGCTT 1 cut(s) 188
HpaII CCGG 4 cut(s) 34, 39, 59, 640
HphI GGTGA 3 cut(s) 164, 397, 494
Hpy188I TCNGA 1 cut(s) 451
Hpy188III TCNNGA 3 cut(s) 13, 316, 395
HpyAV CCTTC 1 cut(s) 464
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 55, 64
HpyF3I CTNAG 3 cut(s) 268, 448, 628
HpySE526I ACGT 1 cut(s) 414
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 2 cut(s) 75, 497
HspAI GCGC 2 cut(s) 67, 533
KasI GGCGCC 1 cut(s) 66
KspI CCGCGG 1 cut(s) 90
Kzo9I GATC 4 cut(s) 225, 274, 312, 606
LmnI GCTCC 1 cut(s) 264
Lsp1109I GCAGC 2 cut(s) 328, 517
MaeI CTAG 3 cut(s) 194, 465, 536
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 3 cut(s) 321, 482, 572
MalI GATC 4 cut(s) 227, 276, 314, 608
MboI GATC 4 cut(s) 225, 274, 312, 606
MboII GAAGA 1 cut(s) 296
MflI RGATCY 2 cut(s) 225, 606
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 1 cut(s) 152
Mly113I GGCGCC 1 cut(s) 67
MmeI TCCRAC 2 cut(s) 253, 435
MseI TTAA 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 4 cut(s) 34, 39, 59, 640
MspR9I CCNGG 4 cut(s) 35, 40, 60, 383
MvaI CCWGG 1 cut(s) 383
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 3 cut(s) 35, 55, 64
NarI GGCGCC 1 cut(s) 67
NciI CCSGG 3 cut(s) 35, 40, 60
NcoI CCATGG 1 cut(s) 71
NdeII GATC 4 cut(s) 225, 274, 312, 606
NlaIII CATG 2 cut(s) 75, 497
NlaIV GGNNCC 3 cut(s) 68, 227, 638
NmuCI GTSAC 2 cut(s) 482, 572
PkrI GCNGC 2 cut(s) 343, 532
PluTI GGCGCC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 381
PspEI GGTNACC 1 cut(s) 482
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 3 cut(s) 68, 227, 638
PspPI GGNCC 6 cut(s) 31, 36, 56, 84, 91, 473
PsuI RGATCY 2 cut(s) 225, 606
RsaI GTAC 1 cut(s) 490
RsaNI GTAC 1 cut(s) 489
SacII CCGCGG 1 cut(s) 90
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 2 cut(s) 342, 531
Sau3AI GATC 4 cut(s) 225, 274, 312, 606
Sau96I GGNCC 6 cut(s) 31, 36, 56, 84, 91, 473
ScrFI CCNGG 4 cut(s) 35, 40, 60, 383
SduI GDGCHC 1 cut(s) 420
SetI ASST 8 cut(s) 119, 150, 192, 269, 323, 387, 417, 447
SfcI CTRYAG 1 cut(s) 207
SfoI GGCGCC 1 cut(s) 68
Sfr303I CCGCGG 1 cut(s) 90
SgrBI CCGCGG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
Sse9I AATT 1 cut(s) 152
SsiI CCGC 5 cut(s) 29, 63, 87, 89, 650
SspDI GGCGCC 1 cut(s) 66
SspMI CTAG 3 cut(s) 194, 465, 536
StyD4I CCNGG 4 cut(s) 33, 38, 58, 381
StyI CCWWGG 2 cut(s) 71, 308
TaaI ACNGT 1 cut(s) 488
TaiI ACGT 1 cut(s) 417
TaqI TCGA 3 cut(s) 12, 500, 546
TasI AATT 1 cut(s) 152
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 3 cut(s) 58, 513, 619
TseFI GTSAC 2 cut(s) 482, 572
TseI GCWGC 2 cut(s) 341, 530
Tsp45I GTSAC 2 cut(s) 482, 572
TspDTI ATGAA 1 cut(s) 261
TspRI CASTG 3 cut(s) 58, 513, 619
XcmI CCANNNNNNNNNTGG 1 cut(s) 418
XspI CTAG 3 cut(s) 194, 465, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.