RCHIOBHM_CHR0C22G0500641
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0000416
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 420 bp
ATGGCTTCAGCAGGTGCAAAAGCTTGGGGAAGGGGATTTGGGAGTGTGTATAAAGGAATAATCAAGCCCAAAAATGGCAAGGGTCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTGTAGATGGAGAAAGAGGGATCCAACGGCTATTGGGCTTTGAACCCTCTTCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCGGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGACTCATGTATCGACAGCAGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

139

Amino Acids

15.55

Weight (kDa)

9.41

Isoelectric Point (pI)

4.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2
Acc36I ACCTGC 1 cut(s) 2
AclWI GGATC 3 cut(s) 178, 191, 227
AfiI CCNNNNNNNGG 3 cut(s) 74, 139, 216
AgsI TTSAA 3 cut(s) 110, 206, 310
AhdI GACNNNNNGTC 1 cut(s) 284
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 3 cut(s) 23, 148, 352
AluI AGCT 3 cut(s) 23, 148, 352
Alw21I GWGCWC 1 cut(s) 327
AlwI GGATC 3 cut(s) 178, 191, 227
AoxI GGCC 1 cut(s) 380
ApeKI GCWGC 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 380
AsuHPI GGTGA 3 cut(s) 122, 304, 401
BaeI ACNNNNGTAYC 2 cut(s) 386, 419
BamHI GGATCC 1 cut(s) 183
BauI CACGAG 2 cut(s) 223, 272
Bbv12I GWGCWC 1 cut(s) 327
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 164
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 290
BfaI CTAG 2 cut(s) 152, 372
BfmI CTRYAG 1 cut(s) 165
BfuAI ACCTGC 1 cut(s) 2
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 290
BmeRI GACNNNNNGTC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 380
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 237
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 139, 216
Bse1I ACTGG 1 cut(s) 285
BseBI CCWGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 3 cut(s) 74, 139, 216
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 235
BshFI GGCC 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 327
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 3 cut(s) 74, 139, 216
BsmFI GGGAC 1 cut(s) 291
BsnI GGCC 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 2 cut(s) 183, 219
BspANI GGCC 1 cut(s) 382
BspCNI CTCAG 1 cut(s) 368
BspLI GGNNCC 1 cut(s) 185
BspMI ACCTGC 1 cut(s) 2
BspPI GGATC 3 cut(s) 178, 191, 227
BsrI ACTGG 1 cut(s) 285
BssMI GATC 2 cut(s) 183, 219
BssSI CACGAG 2 cut(s) 223, 272
Bst2BI CACGAG 2 cut(s) 223, 272
Bst2UI CCWGG 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 99, 369
BstDEI CTNAG 1 cut(s) 355
BstEII GGTNACC 1 cut(s) 389
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 2 cut(s) 186, 222
BstMBI GATC 2 cut(s) 183, 219
BstNI CCWGG 1 cut(s) 290
BstPI GGTNACC 1 cut(s) 389
BstSCI CCNGG 1 cut(s) 288
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BsuRI GGCC 1 cut(s) 382
BtsCI GGATG 1 cut(s) 337
BtsI GCAGTG 1 cut(s) 419
BtsIMutI CAGTG 1 cut(s) 419
BveI ACCTGC 1 cut(s) 2
Cac8I GCNNGC 2 cut(s) 99, 369
Cfr13I GGNCC 1 cut(s) 380
CviAII CATG 1 cut(s) 400
DdeI CTNAG 1 cut(s) 355
DpnI GATC 2 cut(s) 185, 221
DpnII GATC 2 cut(s) 183, 219
DriI GACNNNNNGTC 1 cut(s) 284
Eam1104I CTCTTC 1 cut(s) 217
Eam1105I GACNNNNNGTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 217
Eco91I GGTNACC 1 cut(s) 389
EcoO65I GGTNACC 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 288
FaeI CATG 1 cut(s) 403
FaiI YATR 4 cut(s) 51, 87, 298, 401
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FaqI GGGAC 1 cut(s) 291
FatI CATG 1 cut(s) 399
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 2 cut(s) 152, 372
GluI GCNGC 1 cut(s) 249
HaeIII GGCC 1 cut(s) 382
Hin1II CATG 1 cut(s) 403
HindIII AAGCTT 2 cut(s) 21, 146
HinfI GANTC 1 cut(s) 396
HphI GGTGA 3 cut(s) 122, 304, 401
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 2 cut(s) 223, 302
HpyAV CCTTC 2 cut(s) 24, 371
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 2 cut(s) 17, 101
HpyF3I CTNAG 1 cut(s) 355
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 1 cut(s) 403
Kzo9I GATC 2 cut(s) 183, 219
LpnPI CCDG 4 cut(s) 125, 266, 275, 302
Lsp1109I GCAGC 1 cut(s) 235
MaeI CTAG 2 cut(s) 152, 372
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 228, 389
MalI GATC 2 cut(s) 185, 221
MboI GATC 2 cut(s) 183, 219
MboII GAAGA 1 cut(s) 204
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 1 cut(s) 110
MlyI GAGTC 1 cut(s) 390
MmeI TCCRAC 2 cut(s) 211, 342
MnlI CCTC 7 cut(s) 97, 173, 219, 220, 268, 325, 328
MseI TTAA 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 290
MvaI CCWGG 1 cut(s) 290
NdeII GATC 2 cut(s) 183, 219
NlaIII CATG 1 cut(s) 403
NlaIV GGNNCC 1 cut(s) 185
NmuCI GTSAC 1 cut(s) 389
PaqCI CACCTGC 1 cut(s) 2
PkrI GCNGC 1 cut(s) 250
PleI GAGTC 1 cut(s) 390
PpsI GAGTC 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 288
PspEI GGTNACC 1 cut(s) 389
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 380
PsuI RGATCY 1 cut(s) 183
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 2 cut(s) 183, 219
Sau96I GGNCC 1 cut(s) 380
SchI GAGTC 1 cut(s) 390
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 1 cut(s) 327
SetI ASST 8 cut(s) 16, 25, 108, 150, 230, 294, 324, 354
SfcI CTRYAG 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 252
SmoI CTYRAG 1 cut(s) 252
Sse9I AATT 1 cut(s) 110
SspMI CTAG 2 cut(s) 152, 372
StyD4I CCNGG 1 cut(s) 288
TaiI ACGT 1 cut(s) 324
TaqI TCGA 2 cut(s) 301, 406
TaqII GACCGA 1 cut(s) 408
TasI AATT 1 cut(s) 110
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 419
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 389
TspRI CASTG 1 cut(s) 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XspI CTAG 2 cut(s) 152, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.