FvH4_6g11681

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
6998629 .. 6999589
961 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11681.t1

Sequence Viewer

Length: 558 bp
ATGGTAGCCCATGTTGGTGACTTTGGTTTAGCAAGCTTCCTCTTTGAAGCATCAAAGAATCATTCCAAGTGTCAGACCATGTCAGCTGGGCTAAAGGGTTCCATAGGCTACATTCCTCCAGAATATGGCATGGGATGTCAAGTTACCATTCTGGGAGATATCTACAGCTATGGGATTCTGTTGCTGGAAATGTTCACAGGAAAAAGGCCTACGGATGACATGTTCAAAGATGGTCTAAGCATTCACCAGTTCACAGCCACGGCTTTCCCTGACCGTGTCATGGACATAGTTGACACTTCATTGCTCCTCGAAACAGAAGAGGATAATGATGACAAAATCAGCAATGACATACAAGAAAGGCCGATAATGGGATACAATGATAAAGGCGTAGACAAATCAAGAAGATTGGAAGAATGCTTAGTTTCAGTAATGCAGATTGGTCTCTCATGCTCCAAAGCATCACCAAAAGAGCGCATTCTCATGAATGTGGTTGTGAACAAGATGAATGCAATTAGAGATTCATATCTCAAATTGACCAACACCAAGTTTGTCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

186

Amino Acids

20.59

Weight (kDa)

5.21

Isoelectric Point (pI)

27.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 76 2.2e-09 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 5 - 82 1.2e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 125
AccI GTMKAC 1 cut(s) 390
AfiI CCNNNNNNNGG 3 cut(s) 125, 280, 368
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 2 cut(s) 47, 226
AloI GAACNNNNNNTCC 2 cut(s) 206, 238
AluBI AGCT 3 cut(s) 36, 86, 168
AluI AGCT 3 cut(s) 36, 86, 168
Alw26I GTCTC 1 cut(s) 446
AoxI GGCC 2 cut(s) 206, 359
AspLEI GCGC 1 cut(s) 474
AsuHPI GGTGA 4 cut(s) 29, 236, 453, 544
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 276
BciVI GTATCC 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 446
BfmI CTRYAG 1 cut(s) 163
BfuI GTATCC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 100
BmsI GCATC 2 cut(s) 59, 467
BpmI CTGGAG 1 cut(s) 102
BsaBI GATNNNNATC 1 cut(s) 522
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 280, 368
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 2 cut(s) 299, 349
Bse8I GATNNNNATC 1 cut(s) 522
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 2 cut(s) 140, 220
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 3 cut(s) 125, 280, 368
BseMI GCAATG 2 cut(s) 299, 349
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 1 cut(s) 296
BseYI CCCAGC 1 cut(s) 86
BshFI GGCC 2 cut(s) 208, 361
BslI CCNNNNNNNGG 3 cut(s) 125, 280, 368
BsmAI GTCTC 1 cut(s) 446
BsmI GAATGC 4 cut(s) 240, 419, 474, 511
BsnI GGCC 2 cut(s) 208, 361
Bso31I GGTCTC 1 cut(s) 446
BspANI GGCC 2 cut(s) 208, 361
BspHI TCATGA 1 cut(s) 480
BspLI GGNNCC 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 446
BsrDI GCAATG 2 cut(s) 299, 349
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 2 cut(s) 236, 418
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 140, 220
BstHHI GCGC 1 cut(s) 474
BstMAI GTCTC 1 cut(s) 446
BstNSI RCATGY 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 163
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 2 cut(s) 208, 361
BtgI CCRYGG 1 cut(s) 258
BtsCI GGATG 2 cut(s) 140, 220
Cac8I GCNNGC 1 cut(s) 34
CciI TCATGA 1 cut(s) 480
CfoI GCGC 1 cut(s) 474
CviAII CATG 7 cut(s) 11, 79, 130, 220, 280, 447, 481
DdeI CTNAG 2 cut(s) 236, 418
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco147I AGGCCT 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 446
Eco32I GATATC 1 cut(s) 160
EcoRV GATATC 1 cut(s) 160
FaeI CATG 7 cut(s) 14, 82, 133, 223, 283, 450, 484
FatI CATG 7 cut(s) 10, 78, 129, 219, 279, 446, 480
FblI GTMKAC 1 cut(s) 390
FokI GGATG 2 cut(s) 147, 227
GlaI GCGC 1 cut(s) 473
GsaI CCCAGC 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 2 cut(s) 208, 361
HhaI GCGC 1 cut(s) 474
Hin1II CATG 7 cut(s) 14, 82, 133, 223, 283, 450, 484
Hin6I GCGC 1 cut(s) 472
HinP1I GCGC 1 cut(s) 472
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 3 cut(s) 58, 175, 518
HphI GGTGA 4 cut(s) 29, 236, 453, 544
Hpy166II GTNNAC 5 cut(s) 195, 252, 292, 391, 496
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 3 cut(s) 119, 399, 481
Hpy8I GTNNAC 5 cut(s) 195, 252, 292, 391, 496
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 2 cut(s) 433, 509
HpyF3I CTNAG 2 cut(s) 236, 418
Hsp92II CATG 7 cut(s) 14, 82, 133, 223, 283, 450, 484
HspAI GCGC 1 cut(s) 472
LmnI GCTCC 2 cut(s) 309, 455
LpnPI CCDG 7 cut(s) 72, 132, 137, 170, 183, 260, 282
LweI GCATC 2 cut(s) 59, 467
MaeIII GTNAC 3 cut(s) 17, 142, 550
MboII GAAGA 3 cut(s) 329, 414, 422
MluCI AATT 2 cut(s) 510, 530
MnlI CCTC 4 cut(s) 50, 126, 313, 317
MslI CAYNNNNRTG 3 cut(s) 15, 479, 485
MspA1I CMGCKG 1 cut(s) 86
Mva1269I GAATGC 4 cut(s) 240, 419, 474, 511
NlaIII CATG 7 cut(s) 14, 82, 133, 223, 283, 450, 484
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 17, 550
NspI RCATGY 1 cut(s) 223
PagI TCATGA 1 cut(s) 480
PceI AGGCCT 1 cut(s) 208
PciI ACATGT 1 cut(s) 219
PctI GAATGC 4 cut(s) 240, 419, 474, 511
PfeI GAWTC 3 cut(s) 58, 175, 518
PflFI GACNNNGTC 2 cut(s) 79, 275
PflMI CCANNNNNTGG 1 cut(s) 125
PscI ACATGT 1 cut(s) 219
PspFI CCCAGC 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 100
PsyI GACNNNGTC 2 cut(s) 79, 275
PvuII CAGCTG 1 cut(s) 86
RseI CAYNNNNRTG 3 cut(s) 15, 479, 485
SetI ASST 4 cut(s) 38, 88, 170, 557
SfaNI GCATC 2 cut(s) 59, 467
SfcI CTRYAG 1 cut(s) 163
SmiMI CAYNNNNRTG 3 cut(s) 15, 479, 485
Sse9I AATT 2 cut(s) 510, 530
SseBI AGGCCT 1 cut(s) 208
StuI AGGCCT 1 cut(s) 208
TaaI ACNGT 1 cut(s) 275
TaqI TCGA 1 cut(s) 309
TasI AATT 2 cut(s) 510, 530
TfiI GAWTC 3 cut(s) 58, 175, 518
TseFI GTSAC 2 cut(s) 17, 550
Tsp45I GTSAC 2 cut(s) 17, 550
TspDTI ATGAA 4 cut(s) 288, 497, 510, 518
TspGWI ACGGA 1 cut(s) 227
Tth111I GACNNNGTC 2 cut(s) 79, 275
Van91I CCANNNNNTGG 1 cut(s) 125
XceI RCATGY 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.