MD06G1129300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000262
Physical Location & Seq
Reverse (-)
27286314 .. 27290990
4677 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1129300.v1.1.491

Sequence Viewer

Length: 282 bp
ATGTTCATATGCATAGGCTTGACTTCGAAAAACGTATCTTGCAAAGCTATGCTTCACAAATTTACAATGCCTCAAGTGCAGCACATACATTTGTGTTATATAATTGTATTCAATAAGGATAATACTATCACTGCACCTTATTCCTTGACACTTTGGGCCTTCTTGAGTCTTCGTTGGAGCAGTGCAAATCAGTTTTCTGACTTGATATCATGGTCTTCAGTAGCTCGGCTGGGCTTTATGAGTATGATCATGATGCGTCAAAAGCTAGGGAGCTTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.68

Weight (kDa)

9.86

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 201
AgsI TTSAA 2 cut(s) 112, 277
AluBI AGCT 4 cut(s) 47, 224, 265, 273
AluI AGCT 4 cut(s) 47, 224, 265, 273
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 156
AsuII TTCGAA 1 cut(s) 26
BbsI GAAGAC 2 cut(s) 161, 207
BbvI GCAGC 1 cut(s) 91
BclI TGATCA 1 cut(s) 246
BfaI CTAG 1 cut(s) 266
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 156
BmsI GCATC 1 cut(s) 243
BpiI GAAGAC 2 cut(s) 161, 207
Bpu14I TTCGAA 1 cut(s) 26
BpuEI CTTGAG 2 cut(s) 57, 184
BseXI GCAGC 1 cut(s) 91
BseYI CCCAGC 1 cut(s) 229
BsgI GTGCAG 2 cut(s) 98, 117
BshFI GGCC 1 cut(s) 158
BsnI GGCC 1 cut(s) 158
Bsp119I TTCGAA 1 cut(s) 26
Bsp143I GATC 1 cut(s) 246
BspANI GGCC 1 cut(s) 158
BspHI TCATGA 1 cut(s) 249
BspT104I TTCGAA 1 cut(s) 26
BssMI GATC 1 cut(s) 246
BstBI TTCGAA 1 cut(s) 26
BstKTI GATC 1 cut(s) 249
BstMBI GATC 1 cut(s) 246
BstMWI GCNNNNNNNGC 2 cut(s) 76, 262
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 2 cut(s) 161, 207
BsuRI GGCC 1 cut(s) 158
BtsI GCAGTG 2 cut(s) 129, 187
BtsIMutI CAGTG 2 cut(s) 129, 187
CciI TCATGA 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 156
CseI GACGC 1 cut(s) 245
CviAII CATG 2 cut(s) 210, 250
CviJI RGCY 8 cut(s) 18, 47, 158, 224, 229, 234, 265, 273
CviKI_1 RGCY 8 cut(s) 18, 47, 158, 224, 229, 234, 265, 273
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
Eco32I GATATC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 201
EcoRV GATATC 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 14
FaeI CATG 2 cut(s) 213, 253
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FatI CATG 2 cut(s) 209, 249
FauNDI CATATG 1 cut(s) 8
FbaI TGATCA 1 cut(s) 246
Fnu4HI GCNGC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 1 cut(s) 266
GluI GCNGC 1 cut(s) 80
GsaI CCCAGC 1 cut(s) 233
HaeIII GGCC 1 cut(s) 158
HgaI GACGC 1 cut(s) 245
Hin1II CATG 2 cut(s) 213, 253
HinfI GANTC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 2 cut(s) 163, 250
HpyAV CCTTC 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 5 cut(s) 12, 42, 79, 134, 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 262
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 2 cut(s) 213, 253
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 1 cut(s) 246
LmnI GCTCC 2 cut(s) 177, 270
LpnPI CCDG 1 cut(s) 215
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 243
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 33
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MboII GAAGA 2 cut(s) 161, 207
MluCI AATT 2 cut(s) 59, 102
MlyI GAGTC 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 1 cut(s) 81
Mph1103I ATGCAT 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 76, 262
NdeI CATATG 1 cut(s) 8
NdeII GATC 1 cut(s) 246
NlaIII CATG 2 cut(s) 213, 253
NmeAIII GCCGAG 1 cut(s) 205
NsiI ATGCAT 1 cut(s) 14
NspV TTCGAA 1 cut(s) 26
PagI TCATGA 1 cut(s) 249
PkrI GCNGC 1 cut(s) 81
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
PspFI CCCAGC 1 cut(s) 229
PspPI GGNCC 1 cut(s) 156
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 1 cut(s) 156
SchI GAGTC 1 cut(s) 175
SetI ASST 6 cut(s) 36, 49, 139, 226, 267, 275
SfaNI GCATC 1 cut(s) 243
SfuI TTCGAA 1 cut(s) 26
SmlI CTYRAG 2 cut(s) 72, 163
SmoI CTYRAG 2 cut(s) 72, 163
Sse9I AATT 2 cut(s) 59, 102
SspMI CTAG 1 cut(s) 266
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 26
TasI AATT 2 cut(s) 59, 102
TscAI CASTG 2 cut(s) 136, 187
TseI GCWGC 1 cut(s) 79
TspRI CASTG 2 cut(s) 136, 187
XapI RAATTY 1 cut(s) 59
XspI CTAG 1 cut(s) 266
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.