Rw3G010380

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000262
Physical Location & Seq
Reverse (-)
9944966 .. 9946222
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G010380.1

Sequence Viewer

Length: 1041 bp
ATGATGAAAAAGCCGAGAGATGGACCCTTGACTTCATCTTCTCATAATGATTCATATCCAAGTATCTCTTACTTGGAACTTGTTCAGTCAACTAATGGGTTTTCTGTGGACAATCTGATTGGTTCGGGAAGTTTTGGTTATGTATACAAAGGATTACTGAGTAGTAATGGAATGGTAGTTGCTGTTAAGGTATTAAACCTTCAACAACACGGAGCTTCAAAGAGTTTCATTGATGAATGCAGAGCACTAAGAAGTATAACGCACCACAATCTTCTCAAGATCATAACTACCTGCTCAAGCACTGATAATCAGGGTAACGACTTCAAAAGTCTAGTTTTCAATTTCATGGAAAATGGAAGTCTAGATCCTTGGCTGCACCCTAGAGAAAATGACAGATCTCAAAATTATCTACATGACCATTGTGAAACATCCATTGTTCATTGTGATCTAAAGCCAAGCAACGTCCTTCTCGATGAGGATATGGTAGCTCATGTTGGTGACTTCGGTTTAGCAAGCTTCCTGTTCGAAGCATCGGATAATCATTCCAAAAGTCAGACCATGTCAGCTAGGCTAGAGGGTTCCATAGGCTACATTCCTCCAGAATATGGCATGGGATGTCAAGTTTCCATTCTGGGAGATATCTATAGCTATGGGATTCTATTGCTAGAAATGTTCACAGGGAAAAGGCCAACGGACGAAATGTTCAAAGATGATCTAAGCATTCACCAGTTCACAGCCATGGCTTTCCCTGACCGTGTCATGGACATAGTTGACACTTCATTGCTCCTGGAAACAGATGAGGATAAGGATGATGATGATGACAAATACAGCAATGATATACAAGAAAGGCCAATAGCCGGGTATCAAGATATAGGCCTAGTGAAAGCAAGAAGATTGGAGGAATGCTTGGTTTCAGTGATGCAGATCGGTCTCTCATGCTCCACAGTATCACCAAGTGAGCGCATTCCCATGAATGTGGTTGTGAACAAGATGACTGCAATTAGATATCTCAAATCGACCAAGACCAAGTTTGTCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

346

Amino Acids

38.6

Weight (kDa)

5.05

Isoelectric Point (pI)

28.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 35 - 243 3e-32 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 36 - 239 1.9e-30 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 299
AccB7I CCANNNNNTGG 1 cut(s) 605
AccI GTMKAC 1 cut(s) 144
AclWI GGATC 1 cut(s) 359
AdeI CACNNNGTG 1 cut(s) 956
AfiI CCNNNNNNNGG 4 cut(s) 20, 605, 760, 857
AgsI TTSAA 5 cut(s) 203, 219, 325, 340, 706
AjnI CCWGG 1 cut(s) 786
AloI GAACNNNNNNTCC 2 cut(s) 686, 718
AluBI AGCT 5 cut(s) 215, 488, 516, 566, 648
AluI AGCT 5 cut(s) 215, 488, 516, 566, 648
Alw21I GWGCWC 1 cut(s) 247
Alw26I GTCTC 1 cut(s) 935
AlwI GGATC 1 cut(s) 359
AoxI GGCC 3 cut(s) 686, 848, 874
ApeKI GCWGC 1 cut(s) 373
Asp700I GAANNNNTTC 1 cut(s) 81
AspLEI GCGC 1 cut(s) 963
AspS9I GGNCC 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 859
AsuHPI GGTGA 4 cut(s) 509, 716, 942, 1027
AsuII TTCGAA 1 cut(s) 525
AvaII GGWCC 1 cut(s) 23
BarI GAAGNNNNNNTAC 2 cut(s) 183, 215
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 360
BccI CCATC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 788
BcnI CCSGG 1 cut(s) 859
BcoDI GTCTC 1 cut(s) 935
BfaI CTAG 7 cut(s) 332, 362, 381, 567, 572, 665, 878
BfmI CTRYAG 1 cut(s) 643
BfuAI ACCTGC 1 cut(s) 299
BglII AGATCT 1 cut(s) 395
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
Bme1390I CCNGG 2 cut(s) 788, 859
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 2 cut(s) 25, 580
BmrFI CCNGG 2 cut(s) 788, 859
BmsI GCATC 2 cut(s) 539, 909
BpmI CTGGAG 1 cut(s) 582
Bpu14I TTCGAA 1 cut(s) 525
BpuEI CTTGAG 2 cut(s) 260, 280
BpuMI CCSGG 1 cut(s) 859
BsaBI GATNNNNATC 2 cut(s) 54, 923
BsaI GGTCTC 1 cut(s) 935
BsaJI CCNNGG 2 cut(s) 368, 738
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 605, 760, 857
Bse1I ACTGG 1 cut(s) 727
Bse3DI GCAATG 2 cut(s) 779, 838
Bse8I GATNNNNATC 2 cut(s) 54, 923
BseBI CCWGG 1 cut(s) 788
BseDI CCNNGG 2 cut(s) 368, 738
BseGI GGATG 3 cut(s) 428, 620, 814
BseJI GATNNNNATC 2 cut(s) 54, 923
BseLI CCNNNNNNNGG 4 cut(s) 20, 605, 760, 857
BseMI GCAATG 2 cut(s) 779, 838
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 727
BseXI GCAGC 1 cut(s) 360
BsgI GTGCAG 1 cut(s) 359
BshFI GGCC 3 cut(s) 688, 850, 876
BsiHKAI GWGCWC 1 cut(s) 247
BsiSI CCGG 1 cut(s) 858
BslI CCNNNNNNNGG 4 cut(s) 20, 605, 760, 857
BsmAI GTCTC 1 cut(s) 935
BsmI GAATGC 4 cut(s) 242, 720, 908, 963
BsnI GGCC 3 cut(s) 688, 850, 876
Bso31I GGTCTC 1 cut(s) 935
Bsp119I TTCGAA 1 cut(s) 525
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 6 cut(s) 279, 364, 395, 445, 712, 924
Bsp19I CCATGG 1 cut(s) 738
BspANI GGCC 3 cut(s) 688, 850, 876
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 25, 580
BspMI ACCTGC 1 cut(s) 299
BspPI GGATC 1 cut(s) 359
BspT104I TTCGAA 1 cut(s) 525
BspTNI GGTCTC 1 cut(s) 935
BsrDI GCAATG 2 cut(s) 779, 838
BsrI ACTGG 1 cut(s) 727
BssECI CCNNGG 2 cut(s) 368, 738
BssMI GATC 6 cut(s) 279, 364, 395, 445, 712, 924
BssNAI GTATAC 1 cut(s) 145
BssT1I CCWWGG 2 cut(s) 368, 738
Bst1107I GTATAC 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 788
Bst4CI ACNGT 2 cut(s) 755, 946
BstBI TTCGAA 1 cut(s) 525
BstC8I GCNNGC 1 cut(s) 514
BstDEI CTNAG 3 cut(s) 158, 248, 716
BstDSI CCRYGG 1 cut(s) 738
BstF5I GGATG 3 cut(s) 428, 620, 814
BstHHI GCGC 1 cut(s) 963
BstKTI GATC 6 cut(s) 282, 367, 398, 448, 715, 927
BstMAI GTCTC 1 cut(s) 935
BstMBI GATC 6 cut(s) 279, 364, 395, 445, 712, 924
BstNI CCWGG 1 cut(s) 788
BstSCI CCNGG 2 cut(s) 786, 857
BstSFI CTRYAG 1 cut(s) 643
BstV1I GCAGC 1 cut(s) 360
BstX2I RGATCY 2 cut(s) 364, 395
BstXI CCANNNNNNTGG 1 cut(s) 976
BstYI RGATCY 2 cut(s) 364, 395
BstZ17I GTATAC 1 cut(s) 145
BsuRI GGCC 3 cut(s) 688, 850, 876
BtgI CCRYGG 1 cut(s) 738
BtsCI GGATG 3 cut(s) 428, 620, 814
BtsIMutI CAGTG 2 cut(s) 300, 921
BveI ACCTGC 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 514
CfoI GCGC 1 cut(s) 963
Cfr13I GGNCC 1 cut(s) 23
CviAII CATG 9 cut(s) 346, 413, 491, 559, 610, 739, 760, 936, 970
DdeI CTNAG 3 cut(s) 158, 248, 716
DpnI GATC 6 cut(s) 281, 366, 397, 447, 714, 926
DpnII GATC 6 cut(s) 279, 364, 395, 445, 712, 924
DraIII CACNNNGTG 1 cut(s) 956
Eco130I CCWWGG 2 cut(s) 368, 738
Eco147I AGGCCT 1 cut(s) 876
Eco31I GGTCTC 1 cut(s) 935
Eco32I GATATC 2 cut(s) 640, 1007
Eco47I GGWCC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 786
EcoRV GATATC 2 cut(s) 640, 1007
EcoT14I CCWWGG 2 cut(s) 368, 738
ErhI CCWWGG 2 cut(s) 368, 738
FaeI CATG 9 cut(s) 349, 416, 494, 562, 613, 742, 763, 939, 973
FalI AAGNNNNNCTT 2 cut(s) 52, 84
FatI CATG 9 cut(s) 345, 412, 490, 558, 609, 738, 759, 935, 969
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 374
FokI GGATG 3 cut(s) 415, 627, 821
Fsp4HI GCNGC 1 cut(s) 374
FspBI CTAG 7 cut(s) 332, 362, 381, 567, 572, 665, 878
GlaI GCGC 1 cut(s) 962
GluI GCNGC 1 cut(s) 374
GsuI CTGGAG 1 cut(s) 582
HaeIII GGCC 3 cut(s) 688, 850, 876
HapII CCGG 1 cut(s) 858
HhaI GCGC 1 cut(s) 963
Hin1II CATG 9 cut(s) 349, 416, 494, 562, 613, 742, 763, 939, 973
Hin6I GCGC 1 cut(s) 961
HinP1I GCGC 1 cut(s) 961
HincII GTYRAC 2 cut(s) 90, 772
HindII GTYRAC 2 cut(s) 90, 772
HindIII AAGCTT 1 cut(s) 514
HinfI GANTC 2 cut(s) 50, 655
HpaII CCGG 1 cut(s) 858
HphI GGTGA 4 cut(s) 509, 716, 942, 1027
Hpy166II GTNNAC 7 cut(s) 90, 109, 145, 675, 732, 772, 985
Hpy188I TCNGA 3 cut(s) 117, 535, 555
Hpy188III TCNNGA 6 cut(s) 126, 277, 362, 470, 599, 866
Hpy8I GTNNAC 7 cut(s) 90, 109, 145, 675, 732, 772, 985
HpyAV CCTTC 2 cut(s) 209, 476
HpyCH4III ACNGT 2 cut(s) 755, 946
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 4 cut(s) 240, 376, 922, 998
HpyF3I CTNAG 3 cut(s) 158, 248, 716
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 9 cut(s) 349, 416, 494, 562, 613, 742, 763, 939, 973
HspAI GCGC 1 cut(s) 961
Kzo9I GATC 6 cut(s) 279, 364, 395, 445, 712, 924
LmnI GCTCC 3 cut(s) 212, 789, 944
Lsp1109I GCAGC 1 cut(s) 360
LweI GCATC 2 cut(s) 539, 909
MaeI CTAG 7 cut(s) 332, 362, 381, 567, 572, 665, 878
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 3 cut(s) 314, 497, 1033
MalI GATC 6 cut(s) 281, 366, 397, 447, 714, 926
MboI GATC 6 cut(s) 279, 364, 395, 445, 712, 924
MboII GAAGA 3 cut(s) 30, 263, 903
MflI RGATCY 2 cut(s) 364, 395
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 3 cut(s) 340, 403, 999
MnlI CCTC 5 cut(s) 469, 568, 606, 793, 892
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 2 cut(s) 186, 194
MslI CAYNNNNRTG 4 cut(s) 495, 737, 968, 974
MspI CCGG 1 cut(s) 858
MspR9I CCNGG 2 cut(s) 788, 859
Mva1269I GAATGC 4 cut(s) 242, 720, 908, 963
MvaI CCWGG 1 cut(s) 788
NciI CCSGG 1 cut(s) 859
NcoI CCATGG 1 cut(s) 738
NdeII GATC 6 cut(s) 279, 364, 395, 445, 712, 924
NlaIII CATG 9 cut(s) 349, 416, 494, 562, 613, 742, 763, 939, 973
NlaIV GGNNCC 2 cut(s) 25, 580
NmeAIII GCCGAG 1 cut(s) 39
NmuCI GTSAC 2 cut(s) 497, 1033
NspV TTCGAA 1 cut(s) 525
PceI AGGCCT 1 cut(s) 876
PcsI WCGNNNNNNNCGW 1 cut(s) 468
PctI GAATGC 4 cut(s) 242, 720, 908, 963
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 2 cut(s) 50, 655
PflFI GACNNNGTC 2 cut(s) 559, 755
PflMI CCANNNNNTGG 1 cut(s) 605
PfoI TCCNGGA 1 cut(s) 786
PkrI GCNGC 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 786
PspGI CCWGG 1 cut(s) 786
PspN4I GGNNCC 2 cut(s) 25, 580
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 2 cut(s) 364, 395
PsyI GACNNNGTC 2 cut(s) 559, 755
RseI CAYNNNNRTG 4 cut(s) 495, 737, 968, 974
SaqAI TTAA 2 cut(s) 186, 194
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 6 cut(s) 279, 364, 395, 445, 712, 924
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 2 cut(s) 788, 859
SduI GDGCHC 1 cut(s) 247
SfaNI GCATC 2 cut(s) 539, 909
SfcI CTRYAG 1 cut(s) 643
SfuI TTCGAA 1 cut(s) 525
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 4 cut(s) 495, 737, 968, 974
SmlI CTYRAG 2 cut(s) 275, 295
SmoI CTYRAG 2 cut(s) 275, 295
Sse9I AATT 3 cut(s) 340, 403, 999
SseBI AGGCCT 1 cut(s) 876
SspMI CTAG 7 cut(s) 332, 362, 381, 567, 572, 665, 878
StuI AGGCCT 1 cut(s) 876
StyD4I CCNGG 2 cut(s) 786, 857
StyI CCWWGG 2 cut(s) 368, 738
TaaI ACNGT 2 cut(s) 755, 946
TaiI ACGT 1 cut(s) 465
TaqI TCGA 3 cut(s) 471, 525, 1016
TaqII GACCGA 1 cut(s) 917
TasI AATT 3 cut(s) 340, 403, 999
TfiI GAWTC 2 cut(s) 50, 655
Tru1I TTAA 2 cut(s) 186, 194
Tru9I TTAA 2 cut(s) 186, 194
TscAI CASTG 2 cut(s) 307, 921
TseFI GTSAC 2 cut(s) 497, 1033
TseI GCWGC 1 cut(s) 373
Tsp45I GTSAC 2 cut(s) 497, 1033
TspDTI ATGAA 9 cut(s) 20, 24, 42, 217, 249, 334, 428, 768, 986
TspGWI ACGGA 2 cut(s) 225, 707
TspRI CASTG 2 cut(s) 307, 921
Tth111I GACNNNGTC 2 cut(s) 559, 755
Van91I CCANNNNNTGG 1 cut(s) 605
VpaK11BI GGWCC 1 cut(s) 23
XbaI TCTAGA 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 7 cut(s) 332, 362, 381, 567, 572, 665, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.