MD12G1135200.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
21214470 .. 21215284
815 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1135200.v1.1.491

Sequence Viewer

Length: 696 bp
ATGGTAAATGGAAGTCTAGAGGTGTGGCTGCATCCAAGAGATAATGAGGAATCTAAAAGTAAGAGGTTAAGCCTTATCCAAAGACTGAATATTGCAATTGATGTTACTTCTGCATTGGACTATCTCTACCACCATTCCAGAGCTTCAATTGTTCATTGTGATATGAAGCCAAGCAACGTTCTTCTTGATGAAGATATGGTAGCTCATGTTGGTGACTTTAGTTTAGCAAGGTTCTTGTTTGAAGCATCGGACAATCCCTCTCAAAGTCAAACCATGTCAGCTAGGTTAAAGGGTTCCATTGGCTACATTCCTCCAGAGTATGGCATGGGAGGCCAAGTCTCGACATTGGGAGATGTGTATAGCTTTGGAGTATTGCTGCTAGAAATGTTCACAGGGAAAAGACCTATGGACGACATGTTTGGAGGTCATCTAAGCATTCACCAATTCACAGCAATGGCAATGTCTGACCATGCCATGGACTTAGTTGACCCTTCATTATTGATCATTGAAAGAGAAGATGCAGATACTACTGATGATGCAGCTTGTTCCATGGAAGAATCTTGGAGAAATGTTTTGGTTTCAGTGATGCAGATTGGACTGTCTTGCACTGAAATATGCCTAGGAGAGCAGATGCATACGGATGTAGTTGTCAAGAAAATGAATGGAATACGGGACTCATATATGAACTTGGAATAA

Protein Analysis

232

Amino Acids

25.74

Weight (kDa)

4.75

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 139 8.4e-21 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 19 - 149 1e-19 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 320, 475
AclI AACGTT 1 cut(s) 177
AfiI CCNNNNNNNGG 2 cut(s) 320, 475
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 3 cut(s) 147, 242, 509
AluBI AGCT 5 cut(s) 143, 203, 281, 363, 542
AluI AGCT 5 cut(s) 143, 203, 281, 363, 542
Alw26I GTCTC 1 cut(s) 343
AoxI GGCC 1 cut(s) 331
ApeKI GCWGC 3 cut(s) 28, 376, 539
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
AspA2I CCTAGG 1 cut(s) 619
AsuHPI GGTGA 2 cut(s) 224, 431
AvrII CCTAGG 1 cut(s) 619
BbvI GCAGC 3 cut(s) 15, 363, 551
BclI TGATCA 1 cut(s) 501
BcoDI GTCTC 1 cut(s) 343
BfaI CTAG 4 cut(s) 17, 282, 380, 620
BisI GCNGC 3 cut(s) 29, 377, 540
BlnI CCTAGG 1 cut(s) 619
BlsI GCNGC 3 cut(s) 30, 378, 541
BmiI GGNNCC 1 cut(s) 295
BmsI GCATC 6 cut(s) 40, 254, 508, 526, 576, 621
BpmI CTGGAG 1 cut(s) 297
BsaJI CCNNGG 3 cut(s) 474, 549, 619
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 475
Bse3DI GCAATG 2 cut(s) 459, 465
BseDI CCNNGG 3 cut(s) 474, 549, 619
BseGI GGATG 2 cut(s) 31, 646
BseLI CCNNNNNNNGG 2 cut(s) 320, 475
BseMI GCAATG 2 cut(s) 459, 465
BseXI GCAGC 3 cut(s) 15, 363, 551
BshFI GGCC 1 cut(s) 333
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 2 cut(s) 320, 475
BsmAI GTCTC 1 cut(s) 343
BsmFI GGGAC 1 cut(s) 686
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 1 cut(s) 333
Bsp143I GATC 1 cut(s) 501
Bsp19I CCATGG 2 cut(s) 474, 549
BspANI GGCC 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 295
BsrDI GCAATG 2 cut(s) 459, 465
BssECI CCNNGG 3 cut(s) 474, 549, 619
BssMI GATC 1 cut(s) 501
BssT1I CCWWGG 3 cut(s) 474, 549, 619
Bst4CI ACNGT 1 cut(s) 600
BstDEI CTNAG 2 cut(s) 431, 481
BstDSI CCRYGG 2 cut(s) 474, 549
BstF5I GGATG 2 cut(s) 31, 646
BstKTI GATC 1 cut(s) 504
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 1 cut(s) 501
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstNSI RCATGY 1 cut(s) 418
BstV1I GCAGC 3 cut(s) 15, 363, 551
BsuRI GGCC 1 cut(s) 333
BtgI CCRYGG 2 cut(s) 474, 549
BtsCI GGATG 2 cut(s) 31, 646
BtsIMutI CAGTG 2 cut(s) 588, 606
CviAII CATG 7 cut(s) 206, 274, 325, 415, 470, 475, 550
DdeI CTNAG 2 cut(s) 431, 481
DpnI GATC 1 cut(s) 503
DpnII GATC 1 cut(s) 501
Eco130I CCWWGG 3 cut(s) 474, 549, 619
EcoT14I CCWWGG 3 cut(s) 474, 549, 619
EcoT22I ATGCAT 1 cut(s) 636
ErhI CCWWGG 3 cut(s) 474, 549, 619
FaeI CATG 7 cut(s) 209, 277, 328, 418, 473, 478, 553
FaqI GGGAC 1 cut(s) 686
FatI CATG 7 cut(s) 205, 273, 324, 414, 469, 474, 549
FbaI TGATCA 1 cut(s) 501
Fnu4HI GCNGC 3 cut(s) 29, 377, 540
FokI GGATG 2 cut(s) 18, 653
Fsp4HI GCNGC 3 cut(s) 29, 377, 540
FspBI CTAG 4 cut(s) 17, 282, 380, 620
GluI GCNGC 3 cut(s) 29, 377, 540
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 1 cut(s) 333
Hin1II CATG 7 cut(s) 209, 277, 328, 418, 473, 478, 553
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 3 cut(s) 50, 557, 674
HphI GGTGA 2 cut(s) 224, 431
Hpy166II GTNNAC 2 cut(s) 390, 487
Hpy188I TCNGA 2 cut(s) 250, 466
Hpy188III TCNNGA 6 cut(s) 17, 138, 185, 314, 340, 652
Hpy8I GTNNAC 2 cut(s) 390, 487
HpyAV CCTTC 1 cut(s) 501
HpyCH4III ACNGT 1 cut(s) 600
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 8 cut(s) 31, 95, 113, 521, 539, 589, 606, 634
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
HpyF3I CTNAG 2 cut(s) 431, 481
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 7 cut(s) 209, 277, 328, 418, 473, 478, 553
Ksp22I TGATCA 1 cut(s) 501
Kzo9I GATC 1 cut(s) 501
LpnPI CCDG 3 cut(s) 151, 327, 378
Lsp1109I GCAGC 3 cut(s) 15, 363, 551
LweI GCATC 6 cut(s) 40, 254, 508, 526, 576, 621
MaeI CTAG 4 cut(s) 17, 282, 380, 620
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 103, 212
MalI GATC 1 cut(s) 503
MboI GATC 1 cut(s) 501
MboII GAAGA 4 cut(s) 173, 203, 527, 566
MfeI CAATTG 2 cut(s) 96, 147
MluCI AATT 3 cut(s) 96, 147, 443
MlyI GAGTC 1 cut(s) 668
MnlI CCTC 7 cut(s) 13, 40, 57, 268, 321, 323, 416
Mph1103I ATGCAT 1 cut(s) 636
MseI TTAA 2 cut(s) 68, 287
MslI CAYNNNNRTG 3 cut(s) 210, 452, 639
MunI CAATTG 2 cut(s) 96, 147
Mva1269I GAATGC 1 cut(s) 435
MwoI GCNNNNNNNGC 1 cut(s) 330
NcoI CCATGG 2 cut(s) 474, 549
NdeII GATC 1 cut(s) 501
NlaIII CATG 7 cut(s) 209, 277, 328, 418, 473, 478, 553
NlaIV GGNNCC 1 cut(s) 295
NmuCI GTSAC 1 cut(s) 212
NsiI ATGCAT 1 cut(s) 636
NspI RCATGY 1 cut(s) 418
PciI ACATGT 1 cut(s) 414
PctI GAATGC 1 cut(s) 435
PfeI GAWTC 2 cut(s) 50, 557
PflMI CCANNNNNTGG 2 cut(s) 320, 475
PkrI GCNGC 3 cut(s) 30, 378, 541
PleI GAGTC 1 cut(s) 668
PpsI GAGTC 1 cut(s) 668
PscI ACATGT 1 cut(s) 414
Psp1406I AACGTT 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 295
RseI CAYNNNNRTG 3 cut(s) 210, 452, 639
SaqAI TTAA 2 cut(s) 68, 287
SatI GCNGC 3 cut(s) 29, 377, 540
Sau3AI GATC 1 cut(s) 501
SchI GAGTC 1 cut(s) 668
SfaNI GCATC 6 cut(s) 40, 254, 508, 526, 576, 621
SmiMI CAYNNNNRTG 3 cut(s) 210, 452, 639
Sse9I AATT 3 cut(s) 96, 147, 443
SspI AATATT 1 cut(s) 91
SspMI CTAG 4 cut(s) 17, 282, 380, 620
StyI CCWWGG 3 cut(s) 474, 549, 619
TaaI ACNGT 1 cut(s) 600
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 341
TasI AATT 3 cut(s) 96, 147, 443
TfiI GAWTC 2 cut(s) 50, 557
Tru1I TTAA 2 cut(s) 68, 287
Tru9I TTAA 2 cut(s) 68, 287
TscAI CASTG 2 cut(s) 588, 613
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 3 cut(s) 28, 376, 539
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 5 cut(s) 143, 179, 204, 483, 674
TspGWI ACGGA 1 cut(s) 653
TspRI CASTG 2 cut(s) 588, 613
Van91I CCANNNNNTGG 2 cut(s) 320, 475
XbaI TCTAGA 1 cut(s) 16
XceI RCATGY 1 cut(s) 418
XmaJI CCTAGG 1 cut(s) 619
XspI CTAG 4 cut(s) 17, 282, 380, 620
Zsp2I ATGCAT 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.