Prupe.1G072900_v2.0.a1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000262
Physical Location & Seq
Reverse (-)
5210551 .. 5212546
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G072900.1

Sequence Viewer

Length: 1170 bp
ATGTTGGGTAACTTGACTTCAGTGATAAATCTCTGCATGGAGCAGAATATGTTCAGCGAAAGCATACCTCTAAGTCTTGCCAATTGCCAAAAGCTACAACTACTTAATCTTCCTAGTAATAATCTAACAGGCACCAGACCTAAGAAGCTTTTTACGCTTTCTTCCCTTACAATTTCTTTGAGCATGTCTAACAATTTTTTGACTGGTTCACTACCGTCTGAAGTGGGCGATTTGGTAAACCTGGCGGAGCTAGATGTCTCCGGAAACAAATTATCAGGTGAAATCCCCGCAACCCTTGATAGTTGTACTATTTTGGAGCGCCTGCACTTAAATAATGAATTTGAAGGAACAATTCCTGAGTCCCCTTATAGCTTTAAGAGGCTTGGAAGAGATGTTTCACGCAATAACTTATCTGGAAAAATTCCTGATTTCTTAGGCAAGTTTAGAGCTCTTAACCATCTCAATCTTTCTTATAATGATTTTGAGGGTGAATTGCCTAAAGAAGGGATCGTTTCAAATGCTAGTGGTCTCTCAGTTCTTGGAAACCATAGGCTCTGTGGTGGCATCCCACAATTACTTTTACCTGCATGCTTGCGCAAAAAGCCTCATTCATCTCAAGGAATTCTTGCGCCAAAAGAATGCTTCATTGCTACTTGTTTAATGGTGAAAAAACTCAATATTGCAATTGATGTCGATTCTGCATTAGATTATCTCCACAACCACTGTGAAACATCCATTGTTCATTGTGATCTAAAGCCGAGCAATGTTCTTCTTGATGAAGATATCGTAGCCCATGTTGGTGACTTTGGTTTAGCACGGTTCCTCTTAGAAGCATCAAATACTCAATCTCAAAGTCAAACCATGTCAGCTAGGCTAAGGGGTTCCATAGGCTACATTCCTCCGGTTGCCCTTTCATTGCTCGTTGAAAAAGTAAATGCAAATGCTGCTGATGACAGATGCGGAGATAACATACGAGCAAGACCAAGCACAAGCTATCAGGATGGCTACCCAGTCCAAGCAAGAAGATTGGAGGAATGTTTGGTTTCAGTGATGCAGCTAGGACTCTCATGCTCTGCAATATCACCAACAGAGCGGATGCTGATGAACGTTGTTGTTAATCAAATGAAGGCAATTAGAGACTCATATCATAATTTAAGAAGACAAAGCTAA

Protein Analysis

390

Amino Acids

42.55

Weight (kDa)

6.51

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 474
Acc16I TGCGCA 1 cut(s) 596
Acc36I ACCTGC 1 cut(s) 592
AccB1I GGYRCC 1 cut(s) 131
AccBSI CCGCTC 1 cut(s) 1093
AccIII TCCGGA 1 cut(s) 260
AciI CCGC 4 cut(s) 245, 288, 960, 1093
AclI AACGTT 1 cut(s) 1107
AclWI GGATC 1 cut(s) 515
AcsI RAATTY 3 cut(s) 338, 420, 621
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 1 cut(s) 503
AgsI TTSAA 3 cut(s) 344, 516, 926
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 9 cut(s) 94, 148, 250, 372, 449, 869, 993, 1057, 1167
AluI AGCT 9 cut(s) 94, 148, 250, 372, 449, 869, 993, 1057, 1167
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 3 cut(s) 262, 533, 1131
AlwI GGATC 1 cut(s) 515
Aor13HI TCCGGA 1 cut(s) 260
ApeKI GCWGC 2 cut(s) 944, 1054
ApoI RAATTY 3 cut(s) 338, 420, 621
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 3 cut(s) 321, 597, 631
AsuHPI GGTGA 5 cut(s) 290, 500, 676, 812, 1074
BanI GGYRCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 451
BarI GAAGNNNNNNTAC 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 1165
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 2 cut(s) 931, 1066
BccI CCATC 2 cut(s) 465, 995
BciT130I CCWGG 1 cut(s) 242
BcoDI GTCTC 3 cut(s) 262, 533, 1131
BfaI CTAG 5 cut(s) 114, 251, 522, 870, 1058
BfoI RGCGCY 1 cut(s) 322
BfuAI ACCTGC 1 cut(s) 592
BisI GCNGC 2 cut(s) 945, 1055
BlsI GCNGC 2 cut(s) 946, 1056
Bme1390I CCNGG 1 cut(s) 242
BmiI GGNNCC 3 cut(s) 133, 821, 883
BmrFI CCNGG 1 cut(s) 242
BmrI ACTGGG 1 cut(s) 1004
BmsI GCATC 5 cut(s) 573, 842, 947, 1041, 1086
BmuI ACTGGG 1 cut(s) 1004
BpiI GAAGAC 1 cut(s) 1165
Bpu10I CCTNAGC 1 cut(s) 875
BpuEI CTTGAG 1 cut(s) 600
BsaI GGTCTC 1 cut(s) 533
BsaWI WCCGGW 2 cut(s) 260, 901
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse1I ACTGG 2 cut(s) 208, 1010
Bse3DI GCAATG 3 cut(s) 645, 769, 914
BseAI TCCGGA 1 cut(s) 260
BseBI CCWGG 1 cut(s) 242
BseGI GGATG 4 cut(s) 564, 731, 1006, 1101
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMI GCAATG 3 cut(s) 645, 769, 914
BseMII CTCAG 2 cut(s) 348, 546
BseNI ACTGG 2 cut(s) 208, 1010
BseXI GCAGC 2 cut(s) 931, 1066
BsgI GTGCAG 1 cut(s) 308
BshNI GGYRCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 451
BsiSI CCGG 2 cut(s) 261, 902
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 503
BsmAI GTCTC 3 cut(s) 262, 533, 1131
BsmFI GGGAC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 644
Bso31I GGTCTC 1 cut(s) 533
Bsp1286I GDGCHC 1 cut(s) 451
Bsp13I TCCGGA 1 cut(s) 260
Bsp143I GATC 2 cut(s) 507, 748
BspACI CCGC 4 cut(s) 245, 288, 960, 1093
BspCNI CTCAG 2 cut(s) 349, 545
BspEI TCCGGA 1 cut(s) 260
BspLI GGNNCC 3 cut(s) 133, 821, 883
BspMI ACCTGC 1 cut(s) 592
BspPI GGATC 1 cut(s) 515
BspT107I GGYRCC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 533
BsrBI CCGCTC 1 cut(s) 1093
BsrDI GCAATG 3 cut(s) 645, 769, 914
BsrI ACTGG 2 cut(s) 208, 1010
BssMI GATC 2 cut(s) 507, 748
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 3 cut(s) 216, 725, 819
Bst6I CTCTTC 1 cut(s) 382
BstAPI GCANNNNNTGC 1 cut(s) 944
BstC8I GCNNGC 3 cut(s) 323, 589, 593
BstDEI CTNAG 7 cut(s) 71, 141, 357, 433, 532, 826, 875
BstENI CCTNNNNNAGG 1 cut(s) 501
BstF5I GGATG 4 cut(s) 564, 731, 1006, 1101
BstH2I RGCGCY 1 cut(s) 322
BstHHI GCGC 3 cut(s) 321, 597, 631
BstKTI GATC 2 cut(s) 510, 751
BstMAI GTCTC 3 cut(s) 262, 533, 1131
BstMBI GATC 2 cut(s) 507, 748
BstMWI GCNNNNNNNGC 3 cut(s) 154, 601, 944
BstNI CCWGG 1 cut(s) 242
BstNSI RCATGY 2 cut(s) 187, 591
BstSCI CCNGG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 931, 1066
BstV2I GAAGAC 1 cut(s) 1165
BtsCI GGATG 4 cut(s) 564, 731, 1006, 1101
BtsIMutI CAGTG 3 cut(s) 27, 721, 1053
BveI ACCTGC 1 cut(s) 592
Cac8I GCNNGC 3 cut(s) 323, 589, 593
CfoI GCGC 3 cut(s) 321, 597, 631
Csp6I GTAC 1 cut(s) 306
CviAII CATG 6 cut(s) 37, 184, 588, 794, 862, 1068
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 7 cut(s) 71, 141, 357, 433, 532, 826, 875
DpnI GATC 2 cut(s) 509, 750
DpnII GATC 2 cut(s) 507, 748
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
EciI GGCGGA 1 cut(s) 260
Ecl136II GAGCTC 1 cut(s) 449
Eco24I GRGCYC 1 cut(s) 451
Eco31I GGTCTC 1 cut(s) 533
Eco32I GATATC 1 cut(s) 784
Eco53kI GAGCTC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 449
EcoNI CCTNNNNNAGG 1 cut(s) 501
EcoRI GAATTC 1 cut(s) 621
EcoRII CCWGG 1 cut(s) 240
EcoRV GATATC 1 cut(s) 784
EcoT38I GRGCYC 1 cut(s) 451
FaeI CATG 6 cut(s) 40, 187, 591, 797, 865, 1071
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FaqI GGGAC 1 cut(s) 346
FatI CATG 6 cut(s) 36, 183, 587, 793, 861, 1067
FauI CCCGC 1 cut(s) 295
Fnu4HI GCNGC 2 cut(s) 945, 1055
FokI GGATG 4 cut(s) 551, 718, 1013, 1108
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 2 cut(s) 945, 1055
FspBI CTAG 5 cut(s) 114, 251, 522, 870, 1058
FspI TGCGCA 1 cut(s) 596
GlaI GCGC 3 cut(s) 320, 596, 630
GluI GCNGC 2 cut(s) 945, 1055
HaeII RGCGCY 1 cut(s) 322
HapII CCGG 2 cut(s) 261, 902
HhaI GCGC 3 cut(s) 321, 597, 631
Hin1II CATG 6 cut(s) 40, 187, 591, 797, 865, 1071
Hin6I GCGC 3 cut(s) 319, 595, 629
HinP1I GCGC 3 cut(s) 319, 595, 629
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 4 cut(s) 359, 695, 1062, 1139
HpaII CCGG 2 cut(s) 261, 902
HphI GGTGA 5 cut(s) 290, 500, 676, 812, 1074
Hpy166II GTNNAC 2 cut(s) 209, 238
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 6 cut(s) 261, 356, 414, 425, 773, 998
Hpy8I GTNNAC 2 cut(s) 209, 238
HpyAV CCTTC 3 cut(s) 338, 497, 1120
HpyCH4III ACNGT 3 cut(s) 216, 725, 819
HpyCH4IV ACGT 1 cut(s) 1107
HpyCH4V TGCA 8 cut(s) 36, 325, 587, 683, 701, 938, 1054, 1076
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 601, 944
HpyF3I CTNAG 7 cut(s) 71, 141, 357, 433, 532, 826, 875
HpySE526I ACGT 1 cut(s) 1107
Hsp92II CATG 6 cut(s) 40, 187, 591, 797, 865, 1071
HspAI GCGC 3 cut(s) 319, 595, 629
Kpn2I TCCGGA 1 cut(s) 260
Kzo9I GATC 2 cut(s) 507, 748
LmnI GCTCC 3 cut(s) 40, 247, 316
Lsp1109I GCAGC 2 cut(s) 931, 1066
LweI GCATC 5 cut(s) 573, 842, 947, 1041, 1086
MaeI CTAG 5 cut(s) 114, 251, 522, 870, 1058
MaeII ACGT 1 cut(s) 1107
MaeIII GTNAC 2 cut(s) 8, 800
MalI GATC 2 cut(s) 509, 750
MbiI CCGCTC 1 cut(s) 1093
MboI GATC 2 cut(s) 507, 748
MboII GAAGA 7 cut(s) 101, 153, 399, 761, 791, 1035, 1170
MfeI CAATTG 2 cut(s) 82, 684
MhlI GDGCHC 1 cut(s) 451
MlyI GAGTC 3 cut(s) 368, 1056, 1133
MnlI CCTC 7 cut(s) 78, 372, 478, 615, 833, 909, 1024
MroI TCCGGA 1 cut(s) 260
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 7 cut(s) 105, 329, 375, 453, 659, 1116, 1154
MslI CAYNNNNRTG 1 cut(s) 798
MspI CCGG 2 cut(s) 261, 902
MspR9I CCNGG 1 cut(s) 242
MunI CAATTG 2 cut(s) 82, 684
Mva1269I GAATGC 1 cut(s) 644
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 3 cut(s) 154, 601, 944
NdeII GATC 2 cut(s) 507, 748
NlaIII CATG 6 cut(s) 40, 187, 591, 797, 865, 1071
NlaIV GGNNCC 3 cut(s) 133, 821, 883
NmeAIII GCCGAG 1 cut(s) 783
NmuCI GTSAC 1 cut(s) 800
NsbI TGCGCA 1 cut(s) 596
NspI RCATGY 2 cut(s) 187, 591
PaeI GCATGC 1 cut(s) 591
PctI GAATGC 1 cut(s) 644
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 695
PkrI GCNGC 2 cut(s) 946, 1056
PleI GAGTC 3 cut(s) 367, 1056, 1133
PpsI GAGTC 3 cut(s) 367, 1056, 1133
PsiI TTATAA 1 cut(s) 474
Psp124BI GAGCTC 1 cut(s) 451
Psp1406I AACGTT 1 cut(s) 1107
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 3 cut(s) 133, 821, 883
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
RseI CAYNNNNRTG 1 cut(s) 798
SacI GAGCTC 1 cut(s) 451
SaqAI TTAA 7 cut(s) 105, 329, 375, 453, 659, 1116, 1154
SatI GCNGC 2 cut(s) 945, 1055
Sau3AI GATC 2 cut(s) 507, 748
SchI GAGTC 3 cut(s) 368, 1056, 1133
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 1 cut(s) 451
SfaNI GCATC 5 cut(s) 573, 842, 947, 1041, 1086
SmiMI CAYNNNNRTG 1 cut(s) 798
SmlI CTYRAG 1 cut(s) 615
SmoI CTYRAG 1 cut(s) 615
SphI GCATGC 1 cut(s) 591
SsiI CCGC 4 cut(s) 245, 288, 960, 1093
SspI AATATT 1 cut(s) 679
SspMI CTAG 5 cut(s) 114, 251, 522, 870, 1058
SstI GAGCTC 1 cut(s) 451
StyD4I CCNGG 1 cut(s) 240
TaaI ACNGT 3 cut(s) 216, 725, 819
TaiI ACGT 1 cut(s) 1110
TaqI TCGA 1 cut(s) 693
TatI WGTACW 1 cut(s) 305
TfiI GAWTC 1 cut(s) 695
Tru1I TTAA 7 cut(s) 105, 329, 375, 453, 659, 1116, 1154
Tru9I TTAA 7 cut(s) 105, 329, 375, 453, 659, 1116, 1154
TscAI CASTG 3 cut(s) 27, 728, 1053
TseFI GTSAC 1 cut(s) 800
TseI GCWGC 2 cut(s) 944, 1054
Tsp45I GTSAC 1 cut(s) 800
TspDTI ATGAA 8 cut(s) 351, 600, 634, 731, 792, 903, 1118, 1139
TspRI CASTG 3 cut(s) 27, 728, 1053
XagI CCTNNNNNAGG 1 cut(s) 501
XapI RAATTY 3 cut(s) 338, 420, 621
XceI RCATGY 2 cut(s) 187, 591
XcmI CCANNNNNNNNNTGG 1 cut(s) 554
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 5 cut(s) 114, 251, 522, 870, 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.