MD12G1169100.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
25053070 .. 25062743
9674 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1169100.v1.1.491

Sequence Viewer

Length: 3063 bp
ATGCATGATGAGCACATGTCCGGAATCTGCAGCATTTCCCAGCTTGGAAACGAATCTGATCACTTGGCTTTGCTAGACTTCAAAAAAAGAATAACTGAAGATCCTCTCAGTGTCATGAGCTCGTGGAATCATTCCGTCCACTTATGCAGTTGGGTAGGCATTACATGCCACCGTGCCACCCAAAGAGTCTTGATTCTGGACCTGGAAGATAAACAATTGGTAGGCTCCATTCCACCTTCCATTGGGAATCTTACTCTTCTAGTTGAAATAAGCTTGGGAATTAACAAATTTCATGGTGAAATTCCCCAAGAACTGGGTCGTCTACGTACCCTGGAAAGTCTCAACCTGTCTTTCAATTCTTTAGGCGGAAAAATTCCGACTAATATGTCCCACTGTACACAACTAAGAGTTTTCGATCTTGTTTCCAATAAGATTATTGGGTCGATTCCACACCAACTCAGTTCGTGGTTGAGTTTAACTGTTCTACATCTTACTGCTAATAATCTTAGTGGAACCATCCCAGATTGGATAGGAAACTTTTCTTCTTTGAGGAGTCTTAGACTTAGCCTCAACAATTTTCAAGGAAGCATACCAAATGAGCTCGGGCATATAACAACCTTGAAGATATTCGCAGTTGGGCAGAATAATTTGTCTGGTATGCTCCCTTCTTCAATTTATAATATTTCTTCCATATACAAGTTCGGTGTTGCCAAAAACCAAGTACATGGAGAGCTACCACCAAATCTCGGCATCTTGCTTCCTAATCTCGTAGTATTTTTATGTGGTATGAACAATTTCACAGGAAATATTCCTGTATCAATTTCAAATGCTTCTAGACTTCAGGTGATTGATTTTGGTTCAAATGACTTCACGGGGACAATCCCTGGAGAAAGTCTTGGAAGCTTGCAAAGCTTAATTTGGCTAAACTTTGCAGACAATCGACTGGGAAATGGAAAACTTGGTGATTTGAGTTTTCCCAATTTCTTGACTAATTGTACCAGTCTTCAAGAATTGGGTCTTAGCTATAATCGTTTTGGGGGAGAAATCCCGAGATCCATAGCCAACCTTTCAACCCAACTACAAGTTCTTTATCTAGGGTTTAATTTGTTACATGGAAGCCTCCCAAACGACATTGGAAATCTTATAAACCTCATCGATCTAGATGTGTCTCATAACTATCTGGCGGGTGTTGTCCCTGAAGAAATTGGGAAGCTCGAGAAGATGGAGATACTAGATTTGCATGCTAACAAAATTTCTGGGCCAATTCCATCTTCCCTTGGTAATATAACTTCATTGATAGAGCTCTACATGGATGGAAACAGTTTTGAGGGAAGTATACCTCCAAGTCTTGGAAACTGCCAGAACCTGTTACTACTTTATCTCTATAATAACAATCTAACGGGCAACATACCTCAAAAGCTTATAGAGCTTTCAAACCTTTCAATTAGTTTGGACCTGTCTGAAAATTATTTGACTGGTTCCTTGCCAAGTAATGTGGGTGATTTGGTGCATCTCACAATGCTAGATGTATCAAACAACAAGTTAACAGGTGAAATCCCCAGCACCATTGGCAGTTGTACTAGTTTGGAGGGCTTGTACTTGGACAACAACAAATTTGAAGGAACAATTCCGCAGTCTCTTAAAGATTTAAGGGGCTTGGAAAAACTTGACATTTCAAGCAATAACTTATCCGAGCAGATTCCTGTATTCATAGGTAAGCTTAGAGCACTTGAGTATCTCAATCTTTCGTATAATGATTTTGAAGGTGAGTTGCCTAAAGAAGGAATTTTTTCAAATGTCAGTGGTGTCTCAGTTCTTGGAAATCATAGGCTCTGTGGTGGCATCCCACAATTACATCTACCTGCATGCCCCAAAAATAAACACCATTCATCTCGAGGACTTTCCTCAAAAGTAGTCATCCCTATATCTTGCGCACTTGCATTCATAATTGCTCTATCATGCTTCTTCGGTGCTCGTTCAATGCTGAAAAAGTCAAGAGATGGACTTGTAACTTCACGTTCTTATAAGGATTGGAAATCAGGTGTTTCCTACTCACAACTTGTTGAATCGACTAACGGTTTCTCTGTGGATAATTTGATTGGTTCGGGAAGTTTTGGTTCTGTTTATAAAGGGGTAATTCCTAGCGATGGAACGATAGTTGCTATTAAGGTATTAAACCTTCAACAAGAAGGAGCGTCCAAGAGTTTCAATGATGAATGCAAAGCTTTAAGAAGTGTCAGGCACCGAAATCTTCTCAAGATCATAACTGCATGCTCGAGCATTGATAATCATGGTAGAGACTTCAAAAGTCTAGTCTTCGAGTTCATGCCAAATGGAAGTCTTGACTCGTGGTTGCATCCTAGAGATGAGGAGCAATCTCCAAGTATGAGATTGAATTTTATGCAAAGATTGAACATAGCCATTGATGTTGCTTCTGCGTTAGATTATCTCCACAACCATTGTGAAACGTCCATTGTTCATTGTGATTTAAAGCCGAGCAATGTACTTCTTGATGAAGACATGGTAGCCCATGTTGGGGACTTTGGTTTAGCAACGTTCCTCTTGGAAGCATCTAATGATCCTTCCCTCAATCAAACAATGTCATCGCAACTAAAGGGTTCTATAGGTTACATTGCTCCGGAGTACGGCATGGGAGGCCAAGTTTCCATATTGGGAGATGTTTACAGCTACGGGATACTCTTGCTAGAAATGTTCACAGGAAAAACACCTACTGATGACATGTTCATCGAAGGTCTAAGCATTTACGAATTCGCAGCCTTGGCTTTGCCCGACCATGTCATGGATGTTGTTGACCCTTCATTGCTCCTCGACCTCGAAGCTAATGGTAGTGTTAACAATGACAGATACGAAAGGAATGCGCTGCCCAGACGTAACAATCGTGGAGTGGTGAAAGCAAAAAAGGTAGAGGAATGCTTGTTTGCTGTGATGCAGATCGGACTCTCCTGTTGTGCAGTATCACCAAGGGAGCGGATGCTTCTGAATATGGTTGTTAGAAAAATGAGTGCAATTAGAGACTCGTACCTCAAAGTTCAAGAAGGCTAA

Protein Analysis

1021

Amino Acids

111.51

Weight (kDa)

5.7

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 18 - 56 9.9e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 359 - 480 1.3e-09 Leucine-rich repeat region
LRR_8 PF13855 359 - 418 9.8e-06 Leucine rich repeat
LRR_14 PF23598 448 - 587 9.9e-12 Leucine-rich repeat region
LRR_8 PF13855 483 - 539 5.4e-06 Leucine rich repeat
LRR_8 PF13855 528 - 587 1.8e-09 Leucine rich repeat
Pkinase PF00069 695 - 912 1.3e-39 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 696 - 914 3.4e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 678, 1145, 2025, 2127
AasI GACNNNNNNGTC 1 cut(s) 385
Acc16I TGCGCA 1 cut(s) 1933
Acc36I ACCTGC 1 cut(s) 1870
AccB1I GGYRCC 1 cut(s) 2241
AccB7I CCANNNNNTGG 3 cut(s) 313, 1349, 2800
AccBSI CCGCTC 1 cut(s) 2989
AccI GTMKAC 2 cut(s) 322, 1336
AccIII TCCGGA 2 cut(s) 20, 2638
AciI CCGC 4 cut(s) 366, 1184, 1631, 2989
AclI AACGTT 1 cut(s) 2555
AclWI GGATC 3 cut(s) 95, 1047, 2573
AcsI RAATTY 8 cut(s) 287, 300, 372, 1251, 1613, 1785, 2395, 2768
AcuI CTGAAG 3 cut(s) 117, 824, 1218
AfaI GTAC 9 cut(s) 328, 397, 723, 997, 1579, 1598, 2505, 2645, 3041
AflIII ACRYGT 2 cut(s) 15, 2739
AhlI ACTAGT 1 cut(s) 1580
AjnI CCWGG 3 cut(s) 201, 330, 883
AjuI GAANNNNNNNTTGG 4 cut(s) 1068, 1100, 1255, 1287
Alw21I GWGCWC 6 cut(s) 15, 122, 603, 1305, 1729, 1975
Alw26I GTCTC 6 cut(s) 344, 1173, 1641, 1813, 2292, 3027
AlwI GGATC 3 cut(s) 95, 1047, 2573
AlwNI CAGNNNCTG 1 cut(s) 1366
Ama87I CYCGRG 5 cut(s) 602, 1048, 1214, 1893, 2275
Aor13HI TCCGGA 2 cut(s) 20, 2638
AoxI GGCC 2 cut(s) 1259, 2656
ApeKI GCWGC 3 cut(s) 30, 2774, 2881
ApoI RAATTY 8 cut(s) 287, 300, 372, 1251, 1613, 1785, 2395, 2768
ArsI GACNNNNNNTTYG 2 cut(s) 2298, 2330
Asp700I GAANNNNTTC 4 cut(s) 538, 626, 794, 1789
AspLEI GCGC 2 cut(s) 1934, 2881
AspS9I GGNCC 3 cut(s) 199, 1259, 1453
AsuHPI GGTGA 8 cut(s) 308, 856, 974, 1511, 1562, 1778, 2920, 2970
AvaI CYCGRG 5 cut(s) 602, 1048, 1214, 1893, 2275
AvaII GGWCC 2 cut(s) 199, 1453
BaeI ACNNNNGTAYC 2 cut(s) 1718, 1751
BanI GGYRCC 1 cut(s) 2241
BanII GRGCYC 3 cut(s) 122, 603, 1305
BarI GAAGNNNNNNTAC 6 cut(s) 649, 681, 1273, 1305, 2163, 2195
BauI CACGAG 2 cut(s) 121, 2347
BbsI GAAGAC 3 cut(s) 995, 2308, 2523
Bbv12I GWGCWC 6 cut(s) 15, 122, 603, 1305, 1729, 1975
BbvI GCAGC 3 cut(s) 42, 2786, 2868
BccI CCATC 6 cut(s) 524, 1216, 1276, 1307, 1994, 2141
BceAI ACGGC 1 cut(s) 2662
BcgI CGANNNNNNTGC 2 cut(s) 2858, 2892
BciT130I CCWGG 3 cut(s) 203, 332, 885
BciVI GTATCC 1 cut(s) 2688
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 6 cut(s) 344, 1173, 1641, 1813, 2292, 3027
BcuI ACTAGT 1 cut(s) 1580
BfmI CTRYAG 2 cut(s) 28, 2622
BfuAI ACCTGC 1 cut(s) 1870
BfuI GTATCC 1 cut(s) 2688
BisI GCNGC 3 cut(s) 31, 2775, 2882
BlsI GCNGC 3 cut(s) 32, 2776, 2883
Bme1390I CCNGG 3 cut(s) 203, 332, 885
Bme18I GGWCC 2 cut(s) 199, 1453
BmeT110I CYCGRG 5 cut(s) 602, 1048, 1214, 1893, 2275
BmgT120I GGNCC 3 cut(s) 199, 1259, 1453
BmiI GGNNCC 4 cut(s) 226, 514, 1480, 2243
BmrFI CCNGG 3 cut(s) 203, 332, 885
BmrI ACTGGG 2 cut(s) 323, 953
BmsI GCATC 7 cut(s) 759, 1519, 1851, 2365, 2579, 2937, 2982
BmuI ACTGGG 2 cut(s) 323, 953
BpiI GAAGAC 3 cut(s) 995, 2308, 2523
BpmI CTGGAG 1 cut(s) 906
BpuEI CTTGAG 2 cut(s) 1751, 2240
Bsa29I ATCGAT 1 cut(s) 1155
BsaAI YACGTR 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 2951
BsaJI CCNNGG 5 cut(s) 330, 883, 1276, 2778, 2981
BsaWI WCCGGW 2 cut(s) 20, 2638
BsaXI ACNNNNNCTCC 4 cut(s) 1580, 1610, 2646, 2676
Bse1I ACTGG 4 cut(s) 318, 948, 999, 1480
Bse3DI GCAATG 3 cut(s) 2506, 2631, 2819
Bse8I GATNNNNATC 1 cut(s) 2951
BseAI TCCGGA 2 cut(s) 20, 2638
BseBI CCWGG 3 cut(s) 203, 332, 885
BseCI ATCGAT 1 cut(s) 1155
BseDI CCNNGG 5 cut(s) 330, 883, 1276, 2778, 2981
BseGI GGATG 7 cut(s) 516, 1318, 1842, 1917, 2356, 2809, 2997
BseJI GATNNNNATC 1 cut(s) 2951
BseMI GCAATG 3 cut(s) 2506, 2631, 2819
BseMII CTCAG 3 cut(s) 121, 472, 1824
BseNI ACTGG 4 cut(s) 318, 948, 999, 1480
BseRI GAGGAG 3 cut(s) 565, 2384, 2816
BseXI GCAGC 3 cut(s) 42, 2786, 2868
BseYI CCCAGC 2 cut(s) 39, 1559
BsgI GTGCAG 1 cut(s) 2991
BshFI GGCC 2 cut(s) 1261, 2658
BshNI GGYRCC 1 cut(s) 2241
BshVI ATCGAT 1 cut(s) 1155
BsiHKAI GWGCWC 6 cut(s) 15, 122, 603, 1305, 1729, 1975
BsiHKCI CYCGRG 5 cut(s) 602, 1048, 1214, 1893, 2275
BsiSI CCGG 2 cut(s) 21, 2639
BslFI GGGAC 4 cut(s) 373, 889, 1178, 2552
BsmAI GTCTC 6 cut(s) 344, 1173, 1641, 1813, 2292, 3027
BsmFI GGGAC 4 cut(s) 373, 889, 1178, 2552
BsmI GAATGC 4 cut(s) 1940, 2222, 2881, 2936
BsnI GGCC 2 cut(s) 1261, 2658
BsoBI CYCGRG 5 cut(s) 602, 1048, 1214, 1893, 2275
Bsp1286I GDGCHC 6 cut(s) 15, 122, 603, 1305, 1729, 1975
Bsp13I TCCGGA 2 cut(s) 20, 2638
Bsp1407I TGTACA 1 cut(s) 395
Bsp143I GATC 8 cut(s) 58, 100, 415, 1052, 1156, 2259, 2578, 2952
BspACI CCGC 4 cut(s) 366, 1184, 1631, 2989
BspANI GGCC 2 cut(s) 1261, 2658
BspCNI CTCAG 3 cut(s) 120, 471, 1823
BspDI ATCGAT 1 cut(s) 1155
BspEI TCCGGA 2 cut(s) 20, 2638
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 4 cut(s) 226, 514, 1480, 2243
BspMAI CTGCAG 1 cut(s) 32
BspMI ACCTGC 1 cut(s) 1870
BspPI GGATC 3 cut(s) 95, 1047, 2573
BspT107I GGYRCC 1 cut(s) 2241
BsrBI CCGCTC 1 cut(s) 2989
BsrDI GCAATG 3 cut(s) 2506, 2631, 2819
BsrGI TGTACA 1 cut(s) 395
BsrI ACTGG 4 cut(s) 318, 948, 999, 1480
BssECI CCNNGG 5 cut(s) 330, 883, 1276, 2778, 2981
BssMI GATC 8 cut(s) 58, 100, 415, 1052, 1156, 2259, 2578, 2952
BssNAI GTATAC 1 cut(s) 1337
BssSI CACGAG 2 cut(s) 121, 2347
BssT1I CCWWGG 3 cut(s) 1276, 2778, 2981
Bst1107I GTATAC 1 cut(s) 1337
Bst2BI CACGAG 2 cut(s) 121, 2347
Bst2UI CCWGG 3 cut(s) 203, 332, 885
Bst4CI ACNGT 5 cut(s) 173, 395, 481, 1322, 2078
Bst6I CTCTTC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 165
BstAUI TGTACA 1 cut(s) 395
BstBAI YACGTR 1 cut(s) 326
BstC8I GCNNGC 4 cut(s) 905, 1242, 1867, 2272
BstENI CCTNNNNNAGG 1 cut(s) 1779
BstF5I GGATG 7 cut(s) 516, 1318, 1842, 1917, 2356, 2809, 2997
BstHHI GCGC 2 cut(s) 1934, 2881
BstKTI GATC 8 cut(s) 61, 103, 418, 1055, 1159, 2262, 2581, 2955
BstMAI GTCTC 6 cut(s) 344, 1173, 1641, 1813, 2292, 3027
BstMBI GATC 8 cut(s) 58, 100, 415, 1052, 1156, 2259, 2578, 2952
BstMWI GCNNNNNNNGC 7 cut(s) 10, 165, 909, 1426, 1569, 2655, 2780
BstNI CCWGG 3 cut(s) 203, 332, 885
BstNSI RCATGY 6 cut(s) 19, 168, 1244, 1869, 2274, 2743
BstSCI CCNGG 3 cut(s) 201, 330, 883
BstSFI CTRYAG 2 cut(s) 28, 2622
BstSNI TACGTA 1 cut(s) 326
BstV1I GCAGC 3 cut(s) 42, 2786, 2868
BstV2I GAAGAC 3 cut(s) 995, 2308, 2523
BstX2I RGATCY 2 cut(s) 100, 1052
BstXI CCANNNNNNTGG 1 cut(s) 725
BstYI RGATCY 2 cut(s) 100, 1052
BstZ17I GTATAC 1 cut(s) 1337
Bsu15I ATCGAT 1 cut(s) 1155
BsuI GTATCC 1 cut(s) 2688
BsuRI GGCC 2 cut(s) 1261, 2658
BsuTUI ATCGAT 1 cut(s) 1155
BtgZI GCGATG 2 cut(s) 2160, 2589
BtsCI GGATG 7 cut(s) 516, 1318, 1842, 1917, 2356, 2809, 2997
BtsIMutI CAGTG 3 cut(s) 115, 391, 1807
BveI ACCTGC 1 cut(s) 1870
Cac8I GCNNGC 4 cut(s) 905, 1242, 1867, 2272
CaiI CAGNNNCTG 1 cut(s) 1366
CciI TCATGA 1 cut(s) 114
CfoI GCGC 2 cut(s) 1934, 2881
Cfr13I GGNCC 3 cut(s) 199, 1259, 1453
ClaI ATCGAT 1 cut(s) 1155
CseI GACGC 1 cut(s) 2184
Csp6I GTAC 9 cut(s) 327, 396, 722, 996, 1578, 1597, 2504, 2644, 3040
CspCI CAANNNNNGTGG 4 cut(s) 1476, 1511, 2441, 2476
CviQI GTAC 9 cut(s) 327, 396, 722, 996, 1578, 1597, 2504, 2644, 3040
DpnI GATC 8 cut(s) 60, 102, 417, 1054, 1158, 2261, 2580, 2954
DpnII GATC 8 cut(s) 58, 100, 415, 1052, 1156, 2259, 2578, 2952
DraI TTTAAA 1 cut(s) 2490
DrdI GACNNNNNNGTC 1 cut(s) 385
DseDI GACNNNNNNGTC 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
EciI GGCGGA 1 cut(s) 381
Ecl136II GAGCTC 3 cut(s) 120, 601, 1303
Eco105I TACGTA 1 cut(s) 326
Eco130I CCWWGG 3 cut(s) 1276, 2778, 2981
Eco24I GRGCYC 3 cut(s) 122, 603, 1305
Eco47I GGWCC 2 cut(s) 199, 1453
Eco53kI GAGCTC 3 cut(s) 120, 601, 1303
Eco57I CTGAAG 3 cut(s) 117, 824, 1218
Eco88I CYCGRG 5 cut(s) 602, 1048, 1214, 1893, 2275
EcoICRI GAGCTC 3 cut(s) 120, 601, 1303
EcoNI CCTNNNNNAGG 1 cut(s) 1779
EcoRI GAATTC 1 cut(s) 2768
EcoRII CCWGG 3 cut(s) 201, 330, 883
EcoT14I CCWWGG 3 cut(s) 1276, 2778, 2981
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 3 cut(s) 122, 603, 1305
ErhI CCWWGG 3 cut(s) 1276, 2778, 2981
FaqI GGGAC 4 cut(s) 373, 889, 1178, 2552
FauI CCCGC 1 cut(s) 1177
FbaI TGATCA 1 cut(s) 58
FblI GTMKAC 2 cut(s) 322, 1336
Fnu4HI GCNGC 3 cut(s) 31, 2775, 2882
FokI GGATG 7 cut(s) 503, 1325, 1829, 1904, 2343, 2816, 3004
FriOI GRGCYC 3 cut(s) 122, 603, 1305
Fsp4HI GCNGC 3 cut(s) 31, 2775, 2882
FspI TGCGCA 1 cut(s) 1933
GlaI GCGC 2 cut(s) 1933, 2880
GluI GCNGC 3 cut(s) 31, 2775, 2882
GsaI CCCAGC 2 cut(s) 43, 1563
GsuI CTGGAG 1 cut(s) 906
HaeIII GGCC 2 cut(s) 1261, 2658
HapII CCGG 2 cut(s) 21, 2639
HgaI GACGC 1 cut(s) 2184
HhaI GCGC 2 cut(s) 1934, 2881
Hin6I GCGC 2 cut(s) 1932, 2879
HinP1I GCGC 2 cut(s) 1932, 2879
HincII GTYRAC 3 cut(s) 1545, 2812, 2854
HindII GTYRAC 3 cut(s) 1545, 2812, 2854
HindIII AAGCTT 6 cut(s) 271, 901, 910, 1418, 1718, 2223
HpaI GTTAAC 2 cut(s) 1545, 2854
HpaII CCGG 2 cut(s) 21, 2639
HphI GGTGA 8 cut(s) 308, 856, 974, 1511, 1562, 1778, 2920, 2970
Hpy166II GTNNAC 9 cut(s) 139, 323, 398, 1337, 1545, 2683, 2715, 2812, 2854
Hpy188I TCNGA 6 cut(s) 58, 378, 1462, 1693, 2957, 3000
Hpy8I GTNNAC 9 cut(s) 139, 323, 398, 1337, 1545, 2683, 2715, 2812, 2854
HpyCH4III ACNGT 5 cut(s) 173, 395, 481, 1322, 2078
HpyCH4IV ACGT 5 cut(s) 325, 2017, 2468, 2555, 2890
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 165, 909, 1426, 1569, 2655, 2780
HpySE526I ACGT 5 cut(s) 325, 2017, 2468, 2555, 2890
HspAI GCGC 2 cut(s) 1932, 2879
Kpn2I TCCGGA 2 cut(s) 20, 2638
Ksp22I TGATCA 1 cut(s) 58
KspAI GTTAAC 2 cut(s) 1545, 2854
Kzo9I GATC 8 cut(s) 58, 100, 415, 1052, 1156, 2259, 2578, 2952
LmnI GCTCC 7 cut(s) 230, 666, 2192, 2371, 2641, 2829, 2986
Lsp1109I GCAGC 3 cut(s) 42, 2786, 2868
LweI GCATC 7 cut(s) 759, 1519, 1851, 2365, 2579, 2937, 2982
MaeII ACGT 5 cut(s) 325, 2017, 2468, 2555, 2890
MaeIII GTNAC 5 cut(s) 1107, 1368, 2008, 2627, 2891
MalI GATC 8 cut(s) 60, 102, 417, 1054, 1158, 2261, 2580, 2954
MbiI CCGCTC 1 cut(s) 2989
MboI GATC 8 cut(s) 58, 100, 415, 1052, 1156, 2259, 2578, 2952
MfeI CAATTG 1 cut(s) 215
MflI RGATCY 2 cut(s) 100, 1052
MhlI GDGCHC 6 cut(s) 15, 122, 603, 1305, 1729, 1975
MlyI GAGTC 5 cut(s) 195, 562, 2339, 2952, 3029
MmeI TCCRAC 1 cut(s) 401
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 2 cut(s) 20, 2638
MroXI GAANNNNTTC 4 cut(s) 538, 626, 794, 1789
MspI CCGG 2 cut(s) 21, 2639
MspR9I CCNGG 3 cut(s) 203, 332, 885
MunI CAATTG 1 cut(s) 215
Mva1269I GAATGC 4 cut(s) 1940, 2222, 2881, 2936
MvaI CCWGG 3 cut(s) 203, 332, 885
MwoI GCNNNNNNNGC 7 cut(s) 10, 165, 909, 1426, 1569, 2655, 2780
NdeII GATC 8 cut(s) 58, 100, 415, 1052, 1156, 2259, 2578, 2952
NlaIV GGNNCC 4 cut(s) 226, 514, 1480, 2243
NmeAIII GCCGAG 2 cut(s) 726, 2520
NsbI TGCGCA 1 cut(s) 1933
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 6 cut(s) 19, 168, 1244, 1869, 2274, 2743
PaeI GCATGC 3 cut(s) 1244, 1869, 2274
PaeR7I CTCGAG 3 cut(s) 1214, 1893, 2275
PagI TCATGA 1 cut(s) 114
PciI ACATGT 2 cut(s) 15, 2739
PcsI WCGNNNNNNNCGW 1 cut(s) 2896
PctI GAATGC 4 cut(s) 1940, 2222, 2881, 2936
PdmI GAANNNNTTC 4 cut(s) 538, 626, 794, 1789
PfeI GAWTC 8 cut(s) 24, 53, 127, 193, 247, 445, 1699, 2066
PflFI GACNNNGTC 1 cut(s) 2795
PflMI CCANNNNNTGG 3 cut(s) 313, 1349, 2800
PkrI GCNGC 3 cut(s) 32, 2776, 2883
PleI GAGTC 5 cut(s) 194, 561, 2339, 2952, 3029
PpsI GAGTC 5 cut(s) 194, 561, 2339, 2952, 3029
Ppu21I YACGTR 1 cut(s) 326
PscI ACATGT 2 cut(s) 15, 2739
PsiI TTATAA 4 cut(s) 678, 1145, 2025, 2127
Psp124BI GAGCTC 3 cut(s) 122, 603, 1305
Psp1406I AACGTT 1 cut(s) 2555
Psp6I CCWGG 3 cut(s) 201, 330, 883
PspFI CCCAGC 2 cut(s) 39, 1559
PspGI CCWGG 3 cut(s) 201, 330, 883
PspN4I GGNNCC 4 cut(s) 226, 514, 1480, 2243
PspPI GGNCC 3 cut(s) 199, 1259, 1453
PspXI VCTCGAGB 1 cut(s) 2275
PstI CTGCAG 1 cut(s) 32
PstNI CAGNNNCTG 1 cut(s) 1366
PsuI RGATCY 2 cut(s) 100, 1052
PsyI GACNNNGTC 1 cut(s) 2795
RsaI GTAC 9 cut(s) 328, 397, 723, 997, 1579, 1598, 2505, 2645, 3041
RsaNI GTAC 9 cut(s) 327, 396, 722, 996, 1578, 1597, 2504, 2644, 3040
SacI GAGCTC 3 cut(s) 122, 603, 1305
SatI GCNGC 3 cut(s) 31, 2775, 2882
Sau3AI GATC 8 cut(s) 58, 100, 415, 1052, 1156, 2259, 2578, 2952
Sau96I GGNCC 3 cut(s) 199, 1259, 1453
SchI GAGTC 5 cut(s) 195, 562, 2339, 2952, 3029
ScrFI CCNGG 3 cut(s) 203, 332, 885
SduI GDGCHC 6 cut(s) 15, 122, 603, 1305, 1729, 1975
SfaNI GCATC 7 cut(s) 759, 1519, 1851, 2365, 2579, 2937, 2982
SfcI CTRYAG 2 cut(s) 28, 2622
Sfr274I CTCGAG 3 cut(s) 1214, 1893, 2275
SinI GGWCC 2 cut(s) 199, 1453
SlaI CTCGAG 3 cut(s) 1214, 1893, 2275
SmlI CTYRAG 5 cut(s) 1214, 1730, 1893, 2255, 2275
SmoI CTYRAG 5 cut(s) 1214, 1730, 1893, 2255, 2275
SnaBI TACGTA 1 cut(s) 326
SpeI ACTAGT 1 cut(s) 1580
SphI GCATGC 3 cut(s) 1244, 1869, 2274
SsiI CCGC 4 cut(s) 366, 1184, 1631, 2989
SspI AATATT 2 cut(s) 682, 808
SstI GAGCTC 3 cut(s) 122, 603, 1305
StyD4I CCNGG 3 cut(s) 201, 330, 883
StyI CCWWGG 3 cut(s) 1276, 2778, 2981
TaaI ACNGT 5 cut(s) 173, 395, 481, 1322, 2078
TaiI ACGT 5 cut(s) 328, 2020, 2471, 2558, 2893
TatI WGTACW 5 cut(s) 395, 721, 1577, 1596, 2503
TfiI GAWTC 8 cut(s) 24, 53, 127, 193, 247, 445, 1699, 2066
TscAI CASTG 3 cut(s) 115, 398, 1807
TseI GCWGC 3 cut(s) 30, 2774, 2881
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 3 cut(s) 115, 398, 1807
Tth111I GACNNNGTC 1 cut(s) 2795
Van91I CCANNNNNTGG 3 cut(s) 313, 1349, 2800
VpaK11BI GGWCC 2 cut(s) 199, 1453
XagI CCTNNNNNAGG 1 cut(s) 1779
XapI RAATTY 8 cut(s) 287, 300, 372, 1251, 1613, 1785, 2395, 2768
XbaI TCTAGA 2 cut(s) 833, 1159
XceI RCATGY 6 cut(s) 19, 168, 1244, 1869, 2274, 2743
XhoI CTCGAG 3 cut(s) 1214, 1893, 2275
XmiI GTMKAC 2 cut(s) 322, 1336
XmnI GAANNNNTTC 4 cut(s) 538, 626, 794, 1789
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.