RchiOBHm_Chr4g0408641

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
31416469 .. 31417836
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37972

Sequence Viewer

Length: 459 bp
ATGGCATGGGAGGTCAAATTTCCGTTCTGGGAGATATATATATATATATATATATATAGTTATGGAATACTGTTGCTAGAAATGTTCAGAGGAAAAAGACCGACTGATGACATGTTCAAAGATGATCTAAGTATTCACCAATTTGCAGCCATGGCTTTGCCTGATCATGTCATGGACATAGCTGACCCTTCATTGCTCCTTGAGACAGATGACGAGGATGATGACAGATCCTGCAATGACATAAAAGAAAGACCATTAACCAGATATCAAGATCACCCCCAAGTCAACGCAAGAAGATTGGAGGAATGCTTGGTTTCAGTGATACAGATTGGACTTTCATGCTCTGCATTGTCACCAAGAGAGCGGGTGCTTATGGGTATCATTGTCAACAAAATGAAGGCCATTAGAGACTCTTTATCTCAATTGAAGATGCAGCAGCAGCACAGAATCCATAATTAG

Protein Analysis

152

Amino Acids

17.87

Weight (kDa)

5.31

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 364
AciI CCGC 1 cut(s) 364
AclWI GGATC 1 cut(s) 222
AcsI RAATTY 1 cut(s) 17
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 2 cut(s) 118, 427
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 2 cut(s) 197, 402
AlwI GGATC 1 cut(s) 222
AlwNI CAGNNNCTG 1 cut(s) 231
AoxI GGCC 1 cut(s) 399
ApeKI GCWGC 4 cut(s) 146, 433, 436, 439
ApoI RAATTY 1 cut(s) 17
AsuHPI GGTGA 3 cut(s) 128, 266, 345
BbvI GCAGC 4 cut(s) 158, 445, 448, 451
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 197, 402
BfaI CTAG 1 cut(s) 77
BisI GCNGC 4 cut(s) 147, 434, 437, 440
BlsI GCNGC 4 cut(s) 148, 435, 438, 441
BmsI GCATC 1 cut(s) 420
BpuEI CTTGAG 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 150
Bse3DI GCAATG 2 cut(s) 191, 241
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 223
BseMI GCAATG 2 cut(s) 191, 241
BseXI GCAGC 4 cut(s) 158, 445, 448, 451
BshFI GGCC 1 cut(s) 401
BsmAI GTCTC 2 cut(s) 197, 402
BsmI GAATGC 1 cut(s) 311
BsnI GGCC 1 cut(s) 401
Bsp143I GATC 4 cut(s) 124, 163, 227, 271
Bsp19I CCATGG 1 cut(s) 150
BspACI CCGC 1 cut(s) 364
BspANI GGCC 1 cut(s) 401
BspPI GGATC 1 cut(s) 222
BsrBI CCGCTC 1 cut(s) 364
BsrDI GCAATG 2 cut(s) 191, 241
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 4 cut(s) 124, 163, 227, 271
BssT1I CCWWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 4 cut(s) 127, 166, 230, 274
BstMAI GTCTC 2 cut(s) 197, 402
BstMBI GATC 4 cut(s) 124, 163, 227, 271
BstMWI GCNNNNNNNGC 2 cut(s) 152, 439
BstNSI RCATGY 1 cut(s) 115
BstV1I GCAGC 4 cut(s) 158, 445, 448, 451
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
BsuRI GGCC 1 cut(s) 401
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 324
CaiI CAGNNNCTG 1 cut(s) 231
CviAII CATG 6 cut(s) 6, 112, 151, 167, 172, 339
CviJI RGCY 4 cut(s) 149, 155, 182, 401
CviKI_1 RGCY 4 cut(s) 149, 155, 182, 401
DdeI CTNAG 1 cut(s) 128
DpnI GATC 4 cut(s) 126, 165, 229, 273
DpnII GATC 4 cut(s) 124, 163, 227, 271
Eco130I CCWWGG 1 cut(s) 150
Eco32I GATATC 1 cut(s) 266
EcoRV GATATC 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 6 cut(s) 9, 115, 154, 170, 175, 342
FatI CATG 6 cut(s) 5, 111, 150, 166, 171, 338
FauI CCCGC 1 cut(s) 357
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 4 cut(s) 147, 434, 437, 440
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 4 cut(s) 147, 434, 437, 440
FspBI CTAG 1 cut(s) 77
GluI GCNGC 4 cut(s) 147, 434, 437, 440
HaeIII GGCC 1 cut(s) 401
Hin1II CATG 6 cut(s) 9, 115, 154, 170, 175, 342
HincII GTYRAC 2 cut(s) 286, 388
HindII GTYRAC 2 cut(s) 286, 388
HinfI GANTC 2 cut(s) 410, 447
HphI GGTGA 3 cut(s) 128, 266, 345
Hpy166II GTNNAC 2 cut(s) 286, 388
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 2 cut(s) 286, 388
HpyAV CCTTC 2 cut(s) 198, 391
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4V TGCA 4 cut(s) 146, 234, 347, 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 439
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 6 cut(s) 9, 115, 154, 170, 175, 342
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 4 cut(s) 124, 163, 227, 271
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 4 cut(s) 13, 174, 244, 274
Lsp1109I GCAGC 4 cut(s) 158, 445, 448, 451
LweI GCATC 1 cut(s) 420
MaeI CTAG 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 351
MalI GATC 4 cut(s) 126, 165, 229, 273
MbiI CCGCTC 1 cut(s) 364
MboI GATC 4 cut(s) 124, 163, 227, 271
MboII GAAGA 2 cut(s) 306, 439
MfeI CAATTG 1 cut(s) 422
MflI RGATCY 1 cut(s) 227
MluCI AATT 4 cut(s) 17, 140, 422, 454
MlyI GAGTC 1 cut(s) 404
MnlI CCTC 4 cut(s) 4, 83, 208, 295
MseI TTAA 1 cut(s) 257
MunI CAATTG 1 cut(s) 422
Mva1269I GAATGC 1 cut(s) 311
MwoI GCNNNNNNNGC 2 cut(s) 152, 439
NcoI CCATGG 1 cut(s) 150
NdeII GATC 4 cut(s) 124, 163, 227, 271
NlaIII CATG 6 cut(s) 9, 115, 154, 170, 175, 342
NmuCI GTSAC 1 cut(s) 351
NspI RCATGY 1 cut(s) 115
PciI ACATGT 1 cut(s) 111
PctI GAATGC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 447
PkrI GCNGC 4 cut(s) 148, 435, 438, 441
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PscI ACATGT 1 cut(s) 111
PstNI CAGNNNCTG 1 cut(s) 231
PsuI RGATCY 1 cut(s) 227
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 4 cut(s) 147, 434, 437, 440
Sau3AI GATC 4 cut(s) 124, 163, 227, 271
SchI GAGTC 1 cut(s) 404
SetI ASST 2 cut(s) 15, 184
SfaNI GCATC 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 4 cut(s) 17, 140, 422, 454
SsiI CCGC 1 cut(s) 364
SspMI CTAG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 72
TaqII GACCGA 1 cut(s) 115
TasI AATT 4 cut(s) 17, 140, 422, 454
TfiI GAWTC 1 cut(s) 447
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 1 cut(s) 351
TseI GCWGC 4 cut(s) 146, 433, 436, 439
Tsp45I GTSAC 1 cut(s) 351
TspDTI ATGAA 3 cut(s) 180, 327, 410
TspGWI ACGGA 1 cut(s) 12
TspRI CASTG 1 cut(s) 324
XapI RAATTY 1 cut(s) 17
XceI RCATGY 1 cut(s) 115
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.