RLG00000019547

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
53375915 .. 53377563
1649 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019547

Sequence Viewer

Length: 1095 bp
ATGGCAGAATATGGCATGGGAGGTCAAGTTTCCATTATGGGAGATATCTATAGCTATGGGATTCTATTGCTAGAAATGTTCACAGGGAAAAGGCCAACGGACGAAATGTTCAAAGATGGTCTAAGCATTCACCAGTTCACAGTTATGGCTTTCCCTGACCGAGTCATGGACATAGTTGACACTTCATTGTTCCTGGAAACAGATGACGATAATGATGACGATGATGGCAAATACAGCAATGACATACAAGAAGGGCCGATAAACGGGTATAAGGATGAAGGCCTAGTCAAAGCAAGAAGGTTGGAAGAATGCTTGATTTCGGTGATGCAGATTGGTCTTTCATGCTCCACAGCATCACCAAGTGAGTGCATTCCGATGAATGTGGTTGTGAACAAGATGACTGCAATTAGAGATTCCTATCTCAAATCGACCAAGACCAACCATAATCATCTTGGAGGAGAATTGGCAAAATCCATAGCCAATCTATCAACCAAACTGAGGATATTTACAATGGGAGGAAATTTGATATATGGACCCCTCCCTACTGGCATTGGAAATCTGGTAAACTTGACAAATCTTGGAATGGAACAAAGCCACATTGGTGGTAGTCTCCCTGATGTGATCGGGAAGCTCTACAAGTTAGAGGGACTGTATCTGAATCTGAACAGATTTTCAGGGCCAATCCCATCCTCCCTGGGTAACTTGACTTTGGTGACAAGGCTCTTCATGGAGGGAAATAGAGAGGTAGTGGCGATTAAATCCCTTTCGATTTCTTTGACCATGTCTAACAACTCTTTGACTGGTTCACTACCATCTGAAGTGGGTGGTTTGGTAAATCTCGCAGAGCTAGACATATCAGGAAACAAGTTATCAGGTGAAATCCCTGAACCCCTTGGCAGTTGTATTAGTTTGGGGCGCTTGCTTTTGGAAGGTAATGAATTCAATGGACATATTCCTCAGTCTATGGAAAAGCTGAAAGGCTTGGAAGAGTTGGATATTTCACGCAATAACTTATCTGGCCAGCTTCCTGAATTTGTAGGCAAGTTTCGAGCTCTCAAGTATCTCAATCTTTCTCACAATGATTTTGAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

365

Amino Acids

39.65

Weight (kDa)

4.88

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 267 - 358 1.3e-06 Leucine-rich repeat region
LRR_8 PF13855 304 - 362 3.7e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 1018
AcsI RAATTY 3 cut(s) 520, 938, 1031
AcuI CTGAAG 1 cut(s) 837
AdeI CACNNNGTG 1 cut(s) 362
AfiI CCNNNNNNNGG 3 cut(s) 166, 263, 498
AgsI TTSAA 2 cut(s) 112, 943
AjnI CCWGG 2 cut(s) 192, 693
AleI CACNNNNGTG 1 cut(s) 600
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 6 cut(s) 54, 631, 847, 973, 1024, 1052
AluI AGCT 6 cut(s) 54, 631, 847, 973, 1024, 1052
Alw21I GWGCWC 1 cut(s) 1054
Alw26I GTCTC 1 cut(s) 614
AoxI GGCC 5 cut(s) 92, 254, 280, 677, 1018
ApoI RAATTY 3 cut(s) 520, 938, 1031
AspLEI GCGC 1 cut(s) 918
AspS9I GGNCC 3 cut(s) 254, 533, 677
AsuHPI GGTGA 5 cut(s) 122, 334, 348, 724, 887
AvaII GGWCC 1 cut(s) 533
BalI TGGCCA 1 cut(s) 1020
BanII GRGCYC 1 cut(s) 1054
Bbv12I GWGCWC 1 cut(s) 1054
BccI CCATC 4 cut(s) 110, 218, 694, 820
BciT130I CCWGG 2 cut(s) 194, 695
BcoDI GTCTC 1 cut(s) 614
BfaI CTAG 3 cut(s) 71, 284, 848
BfmI CTRYAG 1 cut(s) 49
BfoI RGCGCY 1 cut(s) 919
Bme1390I CCNGG 2 cut(s) 194, 695
Bme18I GGWCC 1 cut(s) 533
BmgT120I GGNCC 3 cut(s) 254, 533, 677
BmiI GGNNCC 1 cut(s) 535
BmrFI CCNGG 2 cut(s) 194, 695
BmsI GCATC 2 cut(s) 315, 362
BpuEI CTTGAG 1 cut(s) 1040
BsaBI GATNNNNATC 1 cut(s) 417
BsaJI CCNNGG 3 cut(s) 693, 694, 892
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 263, 498
Bse1I ACTGG 3 cut(s) 133, 550, 805
Bse3DI GCAATG 1 cut(s) 244
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 2 cut(s) 194, 695
BseDI CCNNGG 3 cut(s) 693, 694, 892
BseGI GGATG 2 cut(s) 280, 686
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 3 cut(s) 166, 263, 498
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 2 cut(s) 488, 971
BseNI ACTGG 3 cut(s) 133, 550, 805
BseRI GAGGAG 1 cut(s) 471
BshFI GGCC 5 cut(s) 94, 256, 282, 679, 1020
BsiHKAI GWGCWC 1 cut(s) 1054
BslFI GGGAC 1 cut(s) 660
BslI CCNNNNNNNGG 3 cut(s) 166, 263, 498
BsmAI GTCTC 1 cut(s) 614
BsmFI GGGAC 1 cut(s) 660
BsmI GAATGC 3 cut(s) 126, 314, 369
BsnI GGCC 5 cut(s) 94, 256, 282, 679, 1020
Bsp1286I GDGCHC 1 cut(s) 1054
Bsp143I GATC 1 cut(s) 621
BspANI GGCC 5 cut(s) 94, 256, 282, 679, 1020
BspCNI CTCAG 2 cut(s) 489, 970
BspLI GGNNCC 1 cut(s) 535
BspQI GCTCTTC 1 cut(s) 728
BsrDI GCAATG 1 cut(s) 244
BsrI ACTGG 3 cut(s) 133, 550, 805
BssECI CCNNGG 3 cut(s) 693, 694, 892
BssMI GATC 1 cut(s) 621
BssT1I CCWWGG 1 cut(s) 892
Bst2UI CCWGG 2 cut(s) 194, 695
Bst4CI ACNGT 2 cut(s) 142, 651
Bst6I CTCTTC 2 cut(s) 728, 981
BstC8I GCNNGC 2 cut(s) 920, 1022
BstDEI CTNAG 3 cut(s) 122, 497, 957
BstF5I GGATG 2 cut(s) 280, 686
BstH2I RGCGCY 1 cut(s) 919
BstHHI GCGC 1 cut(s) 918
BstKTI GATC 1 cut(s) 624
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 1 cut(s) 621
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstNI CCWGG 2 cut(s) 194, 695
BstSCI CCNGG 2 cut(s) 192, 693
BstSFI CTRYAG 1 cut(s) 49
BstXI CCANNNNNNTGG 1 cut(s) 602
BsuRI GGCC 5 cut(s) 94, 256, 282, 679, 1020
BtsCI GGATG 2 cut(s) 280, 686
Cac8I GCNNGC 2 cut(s) 920, 1022
CfoI GCGC 1 cut(s) 918
Cfr13I GGNCC 3 cut(s) 254, 533, 677
CviAII CATG 5 cut(s) 16, 166, 342, 727, 781
DdeI CTNAG 3 cut(s) 122, 497, 957
DpnI GATC 1 cut(s) 623
DpnII GATC 1 cut(s) 621
DraIII CACNNNGTG 1 cut(s) 362
EaeI YGGCCR 1 cut(s) 1018
Eam1104I CTCTTC 2 cut(s) 728, 981
EarI CTCTTC 2 cut(s) 728, 981
Ecl136II GAGCTC 1 cut(s) 1052
Eco130I CCWWGG 1 cut(s) 892
Eco147I AGGCCT 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 1054
Eco32I GATATC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 533
Eco53kI GAGCTC 1 cut(s) 1052
Eco57I CTGAAG 1 cut(s) 837
EcoICRI GAGCTC 1 cut(s) 1052
EcoRI GAATTC 1 cut(s) 938
EcoRII CCWGG 2 cut(s) 192, 693
EcoRV GATATC 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 892
EcoT38I GRGCYC 1 cut(s) 1054
ErhI CCWWGG 1 cut(s) 892
FaeI CATG 5 cut(s) 19, 169, 345, 730, 784
FaqI GGGAC 1 cut(s) 660
FatI CATG 5 cut(s) 15, 165, 341, 726, 780
FokI GGATG 2 cut(s) 287, 673
FriOI GRGCYC 1 cut(s) 1054
FspBI CTAG 3 cut(s) 71, 284, 848
GlaI GCGC 1 cut(s) 917
HaeII RGCGCY 1 cut(s) 919
HaeIII GGCC 5 cut(s) 94, 256, 282, 679, 1020
HhaI GCGC 1 cut(s) 918
Hin1II CATG 5 cut(s) 19, 169, 345, 730, 784
Hin6I GCGC 1 cut(s) 916
HinP1I GCGC 1 cut(s) 916
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 4 cut(s) 61, 162, 413, 658
HphI GGTGA 5 cut(s) 122, 334, 348, 724, 887
Hpy166II GTNNAC 6 cut(s) 81, 138, 178, 391, 565, 806
Hpy188I TCNGA 4 cut(s) 375, 657, 663, 817
Hpy188III TCNNGA 3 cut(s) 625, 858, 1028
Hpy8I GTNNAC 6 cut(s) 81, 138, 178, 391, 565, 806
HpyAV CCTTC 4 cut(s) 245, 272, 291, 923
HpyCH4III ACNGT 2 cut(s) 142, 651
HpyCH4V TGCA 3 cut(s) 328, 369, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 3 cut(s) 122, 497, 957
Hsp92II CATG 5 cut(s) 19, 169, 345, 730, 784
HspAI GCGC 1 cut(s) 916
Kzo9I GATC 1 cut(s) 621
LguI GCTCTTC 1 cut(s) 728
LmnI GCTCC 1 cut(s) 350
LweI GCATC 2 cut(s) 315, 362
MaeI CTAG 3 cut(s) 71, 284, 848
MaeIII GTNAC 2 cut(s) 698, 712
MalI GATC 1 cut(s) 623
MboI GATC 1 cut(s) 621
MboII GAAGA 3 cut(s) 317, 715, 998
MhlI GDGCHC 1 cut(s) 1054
MlsI TGGCCA 1 cut(s) 1020
MluCI AATT 5 cut(s) 405, 461, 520, 938, 1031
MluNI TGGCCA 1 cut(s) 1020
MlyI GAGTC 1 cut(s) 171
MmeI TCCRAC 2 cut(s) 282, 972
Mox20I TGGCCA 1 cut(s) 1020
MscI TGGCCA 1 cut(s) 1020
MseI TTAA 1 cut(s) 756
MslI CAYNNNNRTG 3 cut(s) 143, 374, 600
Msp20I TGGCCA 1 cut(s) 1020
MspR9I CCNGG 2 cut(s) 194, 695
Mva1269I GAATGC 3 cut(s) 126, 314, 369
MvaI CCWGG 2 cut(s) 194, 695
MwoI GCNNNNNNNGC 1 cut(s) 234
NdeII GATC 1 cut(s) 621
NlaIII CATG 5 cut(s) 19, 169, 345, 730, 784
NlaIV GGNNCC 1 cut(s) 535
NmuCI GTSAC 1 cut(s) 712
OliI CACNNNNGTG 1 cut(s) 600
PasI CCCWGGG 1 cut(s) 694
PceI AGGCCT 1 cut(s) 282
PciSI GCTCTTC 1 cut(s) 728
PctI GAATGC 3 cut(s) 126, 314, 369
PfeI GAWTC 3 cut(s) 61, 413, 658
PflFI GACNNNGTC 2 cut(s) 161, 781
PfoI TCCNGGA 1 cut(s) 192
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp124BI GAGCTC 1 cut(s) 1054
Psp6I CCWGG 2 cut(s) 192, 693
PspGI CCWGG 2 cut(s) 192, 693
PspN4I GGNNCC 1 cut(s) 535
PspPI GGNCC 3 cut(s) 254, 533, 677
PsyI GACNNNGTC 2 cut(s) 161, 781
RseI CAYNNNNRTG 3 cut(s) 143, 374, 600
SacI GAGCTC 1 cut(s) 1054
SapI GCTCTTC 1 cut(s) 728
SaqAI TTAA 1 cut(s) 756
Sau3AI GATC 1 cut(s) 621
Sau96I GGNCC 3 cut(s) 254, 533, 677
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 2 cut(s) 194, 695
SduI GDGCHC 1 cut(s) 1054
SfaNI GCATC 2 cut(s) 315, 362
SfcI CTRYAG 1 cut(s) 49
SinI GGWCC 1 cut(s) 533
SmiMI CAYNNNNRTG 3 cut(s) 143, 374, 600
SmlI CTYRAG 1 cut(s) 1055
SmoI CTYRAG 1 cut(s) 1055
Sse9I AATT 5 cut(s) 405, 461, 520, 938, 1031
SseBI AGGCCT 1 cut(s) 282
SspMI CTAG 3 cut(s) 71, 284, 848
SstI GAGCTC 1 cut(s) 1054
StuI AGGCCT 1 cut(s) 282
StyD4I CCNGG 2 cut(s) 192, 693
StyI CCWWGG 1 cut(s) 892
TaaI ACNGT 2 cut(s) 142, 651
TaqI TCGA 3 cut(s) 428, 767, 1048
TaqII GACCGA 1 cut(s) 174
TasI AATT 5 cut(s) 405, 461, 520, 938, 1031
TfiI GAWTC 3 cut(s) 61, 413, 658
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TseFI GTSAC 1 cut(s) 712
Tsp45I GTSAC 1 cut(s) 712
TspDTI ATGAA 6 cut(s) 174, 291, 330, 392, 715, 951
TspGWI ACGGA 1 cut(s) 113
Tth111I GACNNNGTC 2 cut(s) 161, 781
VpaK11BI GGWCC 1 cut(s) 533
XapI RAATTY 3 cut(s) 520, 938, 1031
XcmI CCANNNNNNNNNTGG 1 cut(s) 449
XspI CTAG 3 cut(s) 71, 284, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.