MD04G1157400.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
24556661 .. 24557932
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1157400.v1.1.491

Sequence Viewer

Length: 1074 bp
ATGCTGAAAAAGTCAAGAGATAGACTTGCAACTTCACGTTCTTATAAGGATTGGAAATCAGGTGTCTCCTACTCACAACTCGTTCAATCAACTAACGGGTTCTCTACGGATAATCTTATTGGTTCGGGACGTTTTGGTTCTGTTTATAAAGGGGTAATTCCTAGTGATGGAACAATAGTTGCTGTTAAGGTACTAAACCTTCAACAACAAGGAGCTTCCAAGAGTTTCATAGATGAATGCAAAGCTTTAAGGAGTATAAGGCATCGTAATCTTCTCAATATCATAACTGCATGTTCGAGCTTTGATAATCAGGGCAAGGACTTCAAAAGTCTAGTTTTCGAGTTCATGGCAAATGGAAGTCTAGACTCAATGTTGTATCCAAGATGTGAGGAGGAATCTCCAAGCAAAAGAATGAGTTTTATGCAAAGATTGAACATCGCCATTGATGTTGCTTCTGCCTTAGATTATCTCCACCACCATTGTGAAACGGCCATTGTTCATTGTGATCTAAAGCTGAGCAATGTACTTCTTGATGAAGATATGGTAGCCCATGTTGGGGATTTTGGTTTAGCAAGGTTCCTCTTCGAAACATTAAATGATCCCACCTTCAGTCAAACAATGTCATCTCAGCTAAAGGGTTCTATAGGCTACATTCTTCCAGAATATGGCACAGGAGGCCAAGTTTCCATTGTTGGAGATGTTTACAGCTATGGGATACTATTGTTGGAAATGTTCATAGGAAAAAGACCTACCGATGACATGTTCAAAGATGGTCTAAGCATTTACCAATTTGTAGCCATGTCTTTGCCTGACCATGTTATGGACGTCGTTGACCATTCAATTATCATCGACCTCGAAGCAAATGGTAATGTCAACAATGACATAGTGCGAGAACGAACTCCATCCAGACGTAACAATCGTGGCTCAGTGAAAGAAAAAAAAATAAAGGAATGTTTGGTTTCAGTAATGCAGATAGGACTCTCTTGTTGTGCAATGTCACCAAAGGAGCGGATGCTAATGGACTCAGTTGTTAGAAAAATGAGCACAATCAAAGACTCGTACCTCAAAGTTTAA

Protein Analysis

358

Amino Acids

39.86

Weight (kDa)

7.58

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 35 - 253 1.2e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 36 - 256 8.2e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 45, 147
AatII GACGTC 1 cut(s) 828
AccB7I CCANNNNNTGG 2 cut(s) 665, 820
AccBSI CCGCTC 1 cut(s) 1009
AciI CCGC 1 cut(s) 1009
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 1 cut(s) 489
AcuI CTGAAG 1 cut(s) 592
AcyI GRCGYC 1 cut(s) 825
AfaI GTAC 3 cut(s) 192, 525, 1061
AfiI CCNNNNNNNGG 5 cut(s) 167, 555, 556, 665, 820
AflIII ACRYGT 1 cut(s) 759
AgsI TTSAA 6 cut(s) 86, 203, 325, 433, 766, 840
AleI CACNNNNGTG 1 cut(s) 480
AluBI AGCT 6 cut(s) 215, 245, 300, 514, 631, 708
AluI AGCT 6 cut(s) 215, 245, 300, 514, 631, 708
Alw21I GWGCWC 1 cut(s) 1046
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 593
AoxI GGCC 2 cut(s) 489, 676
AsuHPI GGTGA 1 cut(s) 990
AsuII TTCGAA 1 cut(s) 585
BaeI ACNNNNGTAYC 2 cut(s) 707, 740
BarI GAAGNNNNNNTAC 2 cut(s) 183, 215
Bbv12I GWGCWC 1 cut(s) 1046
BccI CCATC 3 cut(s) 161, 764, 910
BceAI ACGGC 1 cut(s) 504
BciVI GTATCC 2 cut(s) 387, 708
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 3 cut(s) 162, 332, 362
BfmI CTRYAG 1 cut(s) 642
BfuI GTATCC 2 cut(s) 387, 708
BlpI GCTNAGC 1 cut(s) 515
BmiI GGNNCC 1 cut(s) 578
BmsI GCATC 2 cut(s) 271, 1002
Bpu1102I GCTNAGC 1 cut(s) 515
Bpu14I TTCGAA 1 cut(s) 585
BsaHI GRCGYC 1 cut(s) 825
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bsc4I CCNNNNNNNGG 5 cut(s) 167, 555, 556, 665, 820
Bse3DI GCAATG 2 cut(s) 526, 999
BseGI GGATG 2 cut(s) 902, 1017
BseLI CCNNNNNNNGG 5 cut(s) 167, 555, 556, 665, 820
BseMI GCAATG 2 cut(s) 526, 999
BseMII CTCAG 4 cut(s) 506, 641, 939, 1038
BseRI GAGGAG 1 cut(s) 404
BshFI GGCC 2 cut(s) 491, 678
BsiHKAI GWGCWC 1 cut(s) 1046
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 5 cut(s) 167, 555, 556, 665, 820
BsmAI GTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 2 cut(s) 491, 678
Bsp119I TTCGAA 1 cut(s) 585
Bsp1286I GDGCHC 1 cut(s) 1046
Bsp143I GATC 2 cut(s) 505, 598
Bsp1720I GCTNAGC 1 cut(s) 515
BspACI CCGC 1 cut(s) 1009
BspANI GGCC 2 cut(s) 491, 678
BspCNI CTCAG 4 cut(s) 507, 640, 938, 1037
BspLI GGNNCC 1 cut(s) 578
BspPI GGATC 1 cut(s) 593
BspT104I TTCGAA 1 cut(s) 585
BsrBI CCGCTC 1 cut(s) 1009
BsrDI GCAATG 2 cut(s) 526, 999
BssMI GATC 2 cut(s) 505, 598
BssNI GRCGYC 1 cut(s) 825
Bst6I CTCTTC 1 cut(s) 587
BstACI GRCGYC 1 cut(s) 825
BstBI TTCGAA 1 cut(s) 585
BstDEI CTNAG 6 cut(s) 460, 515, 627, 776, 925, 1024
BstF5I GGATG 2 cut(s) 902, 1017
BstKTI GATC 2 cut(s) 508, 601
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 2 cut(s) 505, 598
BstMWI GCNNNNNNNGC 1 cut(s) 675
BstNSI RCATGY 2 cut(s) 294, 763
BstSFI CTRYAG 1 cut(s) 642
BsuI GTATCC 2 cut(s) 387, 708
BsuRI GGCC 2 cut(s) 491, 678
BtgZI GCGATG 1 cut(s) 421
BtsCI GGATG 2 cut(s) 902, 1017
BtsIMutI CAGTG 1 cut(s) 933
Csp6I GTAC 3 cut(s) 191, 524, 1060
CspCI CAANNNNNGTGG 2 cut(s) 461, 496
CviAII CATG 6 cut(s) 291, 346, 551, 760, 799, 815
CviQI GTAC 3 cut(s) 191, 524, 1060
DdeI CTNAG 6 cut(s) 460, 515, 627, 776, 925, 1024
DpnI GATC 2 cut(s) 507, 600
DpnII GATC 2 cut(s) 505, 598
EaeI YGGCCR 1 cut(s) 489
Eam1104I CTCTTC 1 cut(s) 587
EarI CTCTTC 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 592
FaeI CATG 6 cut(s) 294, 349, 554, 763, 802, 818
FaqI GGGAC 1 cut(s) 141
FatI CATG 6 cut(s) 290, 345, 550, 759, 798, 814
FokI GGATG 2 cut(s) 889, 1024
FspBI CTAG 3 cut(s) 162, 332, 362
HaeIII GGCC 2 cut(s) 491, 678
Hin1I GRCGYC 1 cut(s) 825
Hin1II CATG 6 cut(s) 294, 349, 554, 763, 802, 818
HincII GTYRAC 2 cut(s) 832, 874
HindII GTYRAC 2 cut(s) 832, 874
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 5 cut(s) 365, 395, 978, 1022, 1055
HphI GGTGA 1 cut(s) 990
Hpy166II GTNNAC 3 cut(s) 703, 832, 874
Hpy188III TCNNGA 6 cut(s) 15, 126, 362, 530, 659, 906
Hpy8I GTNNAC 3 cut(s) 703, 832, 874
Hpy99I CGWCG 1 cut(s) 830
HpyAV CCTTC 2 cut(s) 209, 616
HpyCH4IV ACGT 4 cut(s) 37, 130, 825, 910
HpyCH4V TGCA 6 cut(s) 29, 240, 290, 424, 970, 992
HpyF10VI GCNNNNNNNGC 1 cut(s) 675
HpyF3I CTNAG 6 cut(s) 460, 515, 627, 776, 925, 1024
HpySE526I ACGT 4 cut(s) 37, 130, 825, 910
Hsp92I GRCGYC 1 cut(s) 825
Hsp92II CATG 6 cut(s) 294, 349, 554, 763, 802, 818
Kzo9I GATC 2 cut(s) 505, 598
LmnI GCTCC 2 cut(s) 212, 1006
LpnPI CCDG 6 cut(s) 45, 296, 657, 672, 822, 919
LweI GCATC 2 cut(s) 271, 1002
MaeI CTAG 3 cut(s) 162, 332, 362
MaeII ACGT 4 cut(s) 37, 130, 825, 910
MaeIII GTNAC 2 cut(s) 911, 996
MalI GATC 2 cut(s) 507, 600
MbiI CCGCTC 1 cut(s) 1009
MboI GATC 2 cut(s) 505, 598
MboII GAAGA 4 cut(s) 263, 548, 574, 647
MhlI GDGCHC 1 cut(s) 1046
MluCI AATT 3 cut(s) 156, 788, 840
MlyI GAGTC 4 cut(s) 359, 972, 1016, 1049
MmeI TCCRAC 2 cut(s) 673, 705
MnlI CCTC 6 cut(s) 382, 385, 590, 668, 863, 1073
MseI TTAA 4 cut(s) 186, 248, 593, 1072
MslI CAYNNNNRTG 1 cut(s) 480
Mva1269I GAATGC 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 675
NdeII GATC 2 cut(s) 505, 598
NlaIII CATG 6 cut(s) 294, 349, 554, 763, 802, 818
NlaIV GGNNCC 1 cut(s) 578
NmuCI GTSAC 1 cut(s) 996
NspI RCATGY 2 cut(s) 294, 763
NspV TTCGAA 1 cut(s) 585
OliI CACNNNNGTG 1 cut(s) 480
PciI ACATGT 1 cut(s) 759
PcsI WCGNNNNNNNCGW 1 cut(s) 916
PctI GAATGC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 395
PflMI CCANNNNNTGG 2 cut(s) 665, 820
PleI GAGTC 4 cut(s) 359, 972, 1016, 1049
PpsI GAGTC 4 cut(s) 359, 972, 1016, 1049
PscI ACATGT 1 cut(s) 759
PsiI TTATAA 2 cut(s) 45, 147
PspN4I GGNNCC 1 cut(s) 578
RsaI GTAC 3 cut(s) 192, 525, 1061
RsaNI GTAC 3 cut(s) 191, 524, 1060
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 4 cut(s) 186, 248, 593, 1072
Sau3AI GATC 2 cut(s) 505, 598
SchI GAGTC 4 cut(s) 359, 972, 1016, 1049
SduI GDGCHC 1 cut(s) 1046
SfaNI GCATC 2 cut(s) 271, 1002
SfcI CTRYAG 1 cut(s) 642
SfuI TTCGAA 1 cut(s) 585
SmiMI CAYNNNNRTG 1 cut(s) 480
Sse9I AATT 3 cut(s) 156, 788, 840
SsiI CCGC 1 cut(s) 1009
SspMI CTAG 3 cut(s) 162, 332, 362
TaiI ACGT 4 cut(s) 40, 133, 828, 913
TaqI TCGA 5 cut(s) 296, 339, 585, 849, 855
TasI AATT 3 cut(s) 156, 788, 840
TatI WGTACW 1 cut(s) 523
TfiI GAWTC 1 cut(s) 395
Tru1I TTAA 4 cut(s) 186, 248, 593, 1072
Tru9I TTAA 4 cut(s) 186, 248, 593, 1072
TscAI CASTG 1 cut(s) 933
TseFI GTSAC 1 cut(s) 996
Tsp45I GTSAC 1 cut(s) 996
TspDTI ATGAA 6 cut(s) 217, 249, 334, 488, 549, 724
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 1 cut(s) 933
Van91I CCANNNNNTGG 2 cut(s) 665, 820
XbaI TCTAGA 1 cut(s) 361
XceI RCATGY 2 cut(s) 294, 763
XspI CTAG 3 cut(s) 162, 332, 362
ZraI GACGTC 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.