Rh3CG128600

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
10451318 .. 10451689
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG128600.1

Sequence Viewer

Length: 372 bp
ATGTTCACGGGAAAAAGAACCACTGATGACATGTTCAAAGATCATCTAAGTATTCACCAATTTGCAGCCATGGCTTTACCTGATCTGGTCATGGACATAGCTGACCCTTCATTGCTCCTTGAGACAGATGACAAGGATGATGACAGATCCTGCAATGACATACAAGAATTAACCAGATATCAAGATCACCCCCAAGTCAACGCAAGAAGATTTGAGGAATGCTTGGTTTCAGTGATACAGATTGGACTTTCATGCTCTGCATTGTCACCAAGAGAGCGGGTGCTTATGGGTATCATTGTCAACAAAATGAAGGCCATTAGAGACTCTTTATCTCAATTGAAGATGCAGCAGCAGCACAGAATCCAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

123

Amino Acids

14.15

Weight (kDa)

5.47

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 277
AciI CCGC 1 cut(s) 277
AclWI GGATC 1 cut(s) 141
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 2 cut(s) 37, 340
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw26I GTCTC 2 cut(s) 116, 315
AlwI GGATC 1 cut(s) 141
AlwNI CAGNNNCTG 1 cut(s) 150
AoxI GGCC 1 cut(s) 312
ApeKI GCWGC 4 cut(s) 65, 346, 349, 352
AsuHPI GGTGA 3 cut(s) 47, 179, 258
BbvI GCAGC 4 cut(s) 77, 358, 361, 364
BcoDI GTCTC 2 cut(s) 116, 315
BisI GCNGC 4 cut(s) 66, 347, 350, 353
BlsI GCNGC 4 cut(s) 67, 348, 351, 354
BmsI GCATC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 69
Bse3DI GCAATG 2 cut(s) 110, 160
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 142
BseMI GCAATG 2 cut(s) 110, 160
BseXI GCAGC 4 cut(s) 77, 358, 361, 364
BshFI GGCC 1 cut(s) 314
BsmAI GTCTC 2 cut(s) 116, 315
BsmI GAATGC 1 cut(s) 224
BsnI GGCC 1 cut(s) 314
Bsp143I GATC 4 cut(s) 40, 82, 146, 184
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 1 cut(s) 277
BspANI GGCC 1 cut(s) 314
BspPI GGATC 1 cut(s) 141
BsrBI CCGCTC 1 cut(s) 277
BsrDI GCAATG 2 cut(s) 110, 160
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 4 cut(s) 40, 82, 146, 184
BssT1I CCWWGG 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 47
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 4 cut(s) 43, 85, 149, 187
BstMAI GTCTC 2 cut(s) 116, 315
BstMBI GATC 4 cut(s) 40, 82, 146, 184
BstMWI GCNNNNNNNGC 2 cut(s) 71, 352
BstNSI RCATGY 1 cut(s) 34
BstV1I GCAGC 4 cut(s) 77, 358, 361, 364
BstX2I RGATCY 1 cut(s) 146
BstYI RGATCY 1 cut(s) 146
BsuRI GGCC 1 cut(s) 314
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 21, 237
CaiI CAGNNNCTG 1 cut(s) 150
CviAII CATG 4 cut(s) 31, 70, 91, 252
CviJI RGCY 4 cut(s) 68, 74, 101, 314
CviKI_1 RGCY 4 cut(s) 68, 74, 101, 314
DdeI CTNAG 1 cut(s) 47
DpnI GATC 4 cut(s) 42, 84, 148, 186
DpnII GATC 4 cut(s) 40, 82, 146, 184
Eco130I CCWWGG 1 cut(s) 69
Eco32I GATATC 1 cut(s) 179
EcoRV GATATC 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 4 cut(s) 34, 73, 94, 255
FaiI YATR 7 cut(s) 32, 71, 92, 98, 161, 253, 287
FatI CATG 4 cut(s) 30, 69, 90, 251
FauI CCCGC 1 cut(s) 270
Fnu4HI GCNGC 4 cut(s) 66, 347, 350, 353
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 4 cut(s) 66, 347, 350, 353
GluI GCNGC 4 cut(s) 66, 347, 350, 353
HaeIII GGCC 1 cut(s) 314
Hin1II CATG 4 cut(s) 34, 73, 94, 255
HincII GTYRAC 2 cut(s) 199, 301
HindII GTYRAC 2 cut(s) 199, 301
HinfI GANTC 2 cut(s) 323, 360
HphI GGTGA 3 cut(s) 47, 179, 258
Hpy166II GTNNAC 3 cut(s) 6, 199, 301
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 3 cut(s) 6, 199, 301
HpyAV CCTTC 2 cut(s) 117, 304
HpyCH4V TGCA 4 cut(s) 65, 153, 260, 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 352
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 4 cut(s) 34, 73, 94, 255
Kzo9I GATC 4 cut(s) 40, 82, 146, 184
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 4 cut(s) 71, 93, 163, 187
Lsp1109I GCAGC 4 cut(s) 77, 358, 361, 364
LweI GCATC 1 cut(s) 333
MaeIII GTNAC 1 cut(s) 264
MalI GATC 4 cut(s) 42, 84, 148, 186
MbiI CCGCTC 1 cut(s) 277
MboI GATC 4 cut(s) 40, 82, 146, 184
MboII GAAGA 2 cut(s) 219, 352
MfeI CAATTG 1 cut(s) 335
MflI RGATCY 1 cut(s) 146
MluCI AATT 4 cut(s) 59, 167, 335, 367
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 1 cut(s) 208
MseI TTAA 1 cut(s) 170
MunI CAATTG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 71, 352
NcoI CCATGG 1 cut(s) 69
NdeII GATC 4 cut(s) 40, 82, 146, 184
NlaIII CATG 4 cut(s) 34, 73, 94, 255
NmuCI GTSAC 1 cut(s) 264
NspI RCATGY 1 cut(s) 34
PciI ACATGT 1 cut(s) 30
PctI GAATGC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 360
PkrI GCNGC 4 cut(s) 67, 348, 351, 354
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PscI ACATGT 1 cut(s) 30
PstNI CAGNNNCTG 1 cut(s) 150
PsuI RGATCY 1 cut(s) 146
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 4 cut(s) 66, 347, 350, 353
Sau3AI GATC 4 cut(s) 40, 82, 146, 184
SchI GAGTC 1 cut(s) 317
SetI ASST 2 cut(s) 82, 103
SfaNI GCATC 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 4 cut(s) 59, 167, 335, 367
SsiI CCGC 1 cut(s) 277
StyI CCWWGG 1 cut(s) 69
TasI AATT 4 cut(s) 59, 167, 335, 367
TfiI GAWTC 1 cut(s) 360
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 2 cut(s) 28, 237
TseFI GTSAC 1 cut(s) 264
TseI GCWGC 4 cut(s) 65, 346, 349, 352
Tsp45I GTSAC 1 cut(s) 264
TspDTI ATGAA 3 cut(s) 99, 240, 323
TspRI CASTG 2 cut(s) 28, 237
XceI RCATGY 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.