FvH4_6g11682

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000262
Physical Location & Seq
Reverse (-)
7003807 .. 7004355
549 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11682.t1

Sequence Viewer

Length: 459 bp
ATGGCAGAGTATAGCATGGGAGCCAAAGTTTCCATATCAGGAGATATCTATAGCTATGGGATACTTTTGCTAGAAATGTTCACAGGGAGAAGACCTACCGATGACGTGTTCAAAGATGATTTAAGCATTCACCAATTTACAGCTATGGCTCTTCCGGACCATGTTATGGACATAGTTGACCCTTCATTGCTCATAGAAAGAGATGAAGAGAATGATAAGGATGATGGTAGAGACCAAAATCATGTCCAAGAAAGACCAAGAAGGCATCAAGATCCTGACCTAGTCAAACGAAGAGGAGAGGAATGCTTGGTTTCAGTTATGCATGTAGGAGTCTTATGCTCGTCAATATCACCAACAGAGCGGATGTTTATGGATGTCATTGTCAACAAATTGAAGGCTATTAGAGATTCCTATCTCAAAGTAAGAAGAAGGAGGATAATGGAATGCAATATTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

153

Amino Acids

17.6

Weight (kDa)

5.53

Isoelectric Point (pI)

63.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 166
AccBSI CCGCTC 1 cut(s) 361
AccIII TCCGGA 1 cut(s) 154
AciI CCGC 1 cut(s) 361
AclWI GGATC 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 166
AflIII ACRYGT 1 cut(s) 105
AgsI TTSAA 2 cut(s) 112, 394
AjiI CACGTC 1 cut(s) 106
AluBI AGCT 2 cut(s) 54, 143
AluI AGCT 2 cut(s) 54, 143
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 1 cut(s) 266
Aor13HI TCCGGA 1 cut(s) 154
AseI ATTAAT 1 cut(s) 453
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 122, 342
AvaII GGWCC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 97
BccI CCATC 1 cut(s) 218
BciVI GTATCC 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 2 cut(s) 71, 281
BfmI CTRYAG 1 cut(s) 49
BfuI GTATCC 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 157
BmgBI CACGTC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 22
BmsI GCATC 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 154
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 185
Bse8I GATNNNNATC 1 cut(s) 411
BseAI TCCGGA 1 cut(s) 154
BseGI GGATG 3 cut(s) 226, 369, 379
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMI GCAATG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 309
BsiSI CCGG 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 225
BsmI GAATGC 3 cut(s) 126, 308, 449
Bso31I GGTCTC 1 cut(s) 225
Bsp13I TCCGGA 1 cut(s) 154
Bsp143I GATC 1 cut(s) 271
BspACI CCGC 1 cut(s) 361
BspEI TCCGGA 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 1 cut(s) 266
BspQI GCTCTTC 1 cut(s) 156
BspTNI GGTCTC 1 cut(s) 225
BsrBI CCGCTC 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 185
BssMI GATC 1 cut(s) 271
Bst6I CTCTTC 3 cut(s) 156, 201, 286
BstF5I GGATG 3 cut(s) 226, 369, 379
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuI GTATCC 1 cut(s) 54
BtrI CACGTC 1 cut(s) 106
BtsCI GGATG 3 cut(s) 226, 369, 379
Cfr13I GGNCC 1 cut(s) 157
CviAII CATG 4 cut(s) 16, 161, 242, 323
CviJI RGCY 5 cut(s) 23, 54, 143, 149, 398
CviKI_1 RGCY 5 cut(s) 23, 54, 143, 149, 398
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eam1104I CTCTTC 3 cut(s) 156, 201, 286
EarI CTCTTC 3 cut(s) 156, 201, 286
Eco31I GGTCTC 1 cut(s) 225
Eco32I GATATC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 157
EcoRV GATATC 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 324
FaeI CATG 4 cut(s) 19, 164, 245, 326
FatI CATG 4 cut(s) 15, 160, 241, 322
FokI GGATG 3 cut(s) 233, 376, 386
FspBI CTAG 2 cut(s) 71, 281
HapII CCGG 1 cut(s) 155
Hin1II CATG 4 cut(s) 19, 164, 245, 326
HincII GTYRAC 2 cut(s) 178, 385
HindII GTYRAC 2 cut(s) 178, 385
HinfI GANTC 2 cut(s) 330, 407
HpaII CCGG 1 cut(s) 155
HphI GGTGA 2 cut(s) 122, 342
Hpy166II GTNNAC 3 cut(s) 81, 178, 385
Hpy188III TCNNGA 4 cut(s) 39, 155, 269, 275
Hpy8I GTNNAC 3 cut(s) 81, 178, 385
HpyAV CCTTC 4 cut(s) 192, 255, 388, 423
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 322, 447
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 4 cut(s) 19, 164, 245, 326
Kpn2I TCCGGA 1 cut(s) 154
Kzo9I GATC 1 cut(s) 271
LguI GCTCTTC 1 cut(s) 156
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 4 cut(s) 24, 69, 168, 288
LweI GCATC 1 cut(s) 274
MaeI CTAG 2 cut(s) 71, 281
MaeII ACGT 1 cut(s) 105
MalI GATC 1 cut(s) 273
MbiI CCGCTC 1 cut(s) 361
MboI GATC 1 cut(s) 271
MboII GAAGA 5 cut(s) 102, 143, 218, 303, 438
MflI RGATCY 1 cut(s) 271
MluCI AATT 3 cut(s) 134, 389, 454
MlyI GAGTC 1 cut(s) 339
MnlI CCTC 3 cut(s) 287, 292, 426
Mph1103I ATGCAT 1 cut(s) 324
MroI TCCGGA 1 cut(s) 154
MseI TTAA 2 cut(s) 122, 453
MspI CCGG 1 cut(s) 155
Mva1269I GAATGC 3 cut(s) 126, 308, 449
NdeII GATC 1 cut(s) 271
NlaIII CATG 4 cut(s) 19, 164, 245, 326
NlaIV GGNNCC 1 cut(s) 22
NsiI ATGCAT 1 cut(s) 324
NspI RCATGY 1 cut(s) 326
PciSI GCTCTTC 1 cut(s) 156
PctI GAATGC 3 cut(s) 126, 308, 449
PfeI GAWTC 1 cut(s) 407
PflFI GACNNNGTC 1 cut(s) 281
PflMI CCANNNNNTGG 1 cut(s) 166
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PshBI ATTAAT 1 cut(s) 453
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 157
PsuI RGATCY 1 cut(s) 271
PsyI GACNNNGTC 1 cut(s) 281
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 2 cut(s) 122, 453
Sau3AI GATC 1 cut(s) 271
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 339
SetI ASST 5 cut(s) 56, 97, 108, 145, 282
SfaNI GCATC 1 cut(s) 274
SfcI CTRYAG 1 cut(s) 49
SinI GGWCC 1 cut(s) 157
Sse9I AATT 3 cut(s) 134, 389, 454
SsiI CCGC 1 cut(s) 361
SspI AATATT 1 cut(s) 451
SspMI CTAG 2 cut(s) 71, 281
TaiI ACGT 1 cut(s) 108
TasI AATT 3 cut(s) 134, 389, 454
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 2 cut(s) 122, 453
Tru9I TTAA 2 cut(s) 122, 453
TspDTI ATGAA 2 cut(s) 174, 219
Tth111I GACNNNGTC 1 cut(s) 281
Van91I CCANNNNNTGG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 157
VspI ATTAAT 1 cut(s) 453
XceI RCATGY 1 cut(s) 326
XspI CTAG 2 cut(s) 71, 281
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.