Rh3DG127400

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
10803042 .. 10803329
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG127400.1

Sequence Viewer

Length: 288 bp
ATGGACATAGCTGACCCTTCATTGCTCCTTGATACGGATGACGAGGATGATGACAGATCCTGCAGTGACTTACAAGAAAGACCATTAACCAGATATCAAGATCACCCCCAAGTCAACGCAAGAAGATTTGAGGAATGCTTGGTTTCAGTGATACAGATTGGACTTTCATGCTCTGCATTGTCACCAAGAGAGCGGGTGCTTATGGGTATCATTGTCAACAAAATGAAGGCCATTAGAGACTCTTTATCTCAATTGAAGATGCAGCAGCAGCACAGAATCCAAAATTAG

Protein Analysis

95

Amino Acids

10.94

Weight (kDa)

5.01

Isoelectric Point (pI)

65.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 193
AciI CCGC 1 cut(s) 193
AclWI GGATC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 1 cut(s) 256
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 1 cut(s) 51
AlwNI CAGNNNCTG 1 cut(s) 60
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 3 cut(s) 262, 265, 268
AsuHPI GGTGA 2 cut(s) 95, 174
BbvI GCAGC 3 cut(s) 274, 277, 280
BcoDI GTCTC 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 61
BisI GCNGC 3 cut(s) 263, 266, 269
BlsI GCNGC 3 cut(s) 264, 267, 270
BmsI GCATC 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 20
BseGI GGATG 2 cut(s) 43, 52
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 20
BseXI GCAGC 3 cut(s) 274, 277, 280
BshFI GGCC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 231
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 1 cut(s) 230
Bsp143I GATC 2 cut(s) 56, 100
BspACI CCGC 1 cut(s) 193
BspANI GGCC 1 cut(s) 230
BspMAI CTGCAG 1 cut(s) 65
BspPI GGATC 1 cut(s) 51
BsrBI CCGCTC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 20
BssMI GATC 2 cut(s) 56, 100
BstF5I GGATG 2 cut(s) 43, 52
BstKTI GATC 2 cut(s) 59, 103
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 2 cut(s) 56, 100
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 61
BstV1I GCAGC 3 cut(s) 274, 277, 280
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BsuRI GGCC 1 cut(s) 230
BtsCI GGATG 2 cut(s) 43, 52
BtsI GCAGTG 1 cut(s) 70
BtsIMutI CAGTG 2 cut(s) 70, 153
CaiI CAGNNNCTG 1 cut(s) 60
CviAII CATG 1 cut(s) 168
CviJI RGCY 2 cut(s) 11, 230
CviKI_1 RGCY 2 cut(s) 11, 230
DpnI GATC 2 cut(s) 58, 102
DpnII GATC 2 cut(s) 56, 100
Eco32I GATATC 1 cut(s) 95
EcoRV GATATC 1 cut(s) 95
FaeI CATG 1 cut(s) 171
FaiI YATR 3 cut(s) 8, 169, 203
FatI CATG 1 cut(s) 167
FauI CCCGC 1 cut(s) 186
Fnu4HI GCNGC 3 cut(s) 263, 266, 269
FokI GGATG 2 cut(s) 50, 59
Fsp4HI GCNGC 3 cut(s) 263, 266, 269
GluI GCNGC 3 cut(s) 263, 266, 269
HaeIII GGCC 1 cut(s) 230
Hin1II CATG 1 cut(s) 171
HincII GTYRAC 2 cut(s) 115, 217
HindII GTYRAC 2 cut(s) 115, 217
HinfI GANTC 2 cut(s) 239, 276
HphI GGTGA 2 cut(s) 95, 174
Hpy166II GTNNAC 2 cut(s) 115, 217
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 2 cut(s) 115, 217
HpyAV CCTTC 2 cut(s) 27, 220
HpyCH4V TGCA 3 cut(s) 63, 176, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
Hsp92II CATG 1 cut(s) 171
Kzo9I GATC 2 cut(s) 56, 100
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 2 cut(s) 73, 103
Lsp1109I GCAGC 3 cut(s) 274, 277, 280
LweI GCATC 1 cut(s) 249
MaeIII GTNAC 2 cut(s) 65, 180
MalI GATC 2 cut(s) 58, 102
MbiI CCGCTC 1 cut(s) 193
MboI GATC 2 cut(s) 56, 100
MboII GAAGA 2 cut(s) 135, 268
MfeI CAATTG 1 cut(s) 251
MflI RGATCY 1 cut(s) 56
MluCI AATT 2 cut(s) 251, 283
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 2 cut(s) 37, 124
MseI TTAA 1 cut(s) 86
MunI CAATTG 1 cut(s) 251
Mva1269I GAATGC 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 268
NdeII GATC 2 cut(s) 56, 100
NlaIII CATG 1 cut(s) 171
NmuCI GTSAC 2 cut(s) 65, 180
PctI GAATGC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 276
PkrI GCNGC 3 cut(s) 264, 267, 270
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PstI CTGCAG 1 cut(s) 65
PstNI CAGNNNCTG 1 cut(s) 60
PsuI RGATCY 1 cut(s) 56
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 3 cut(s) 263, 266, 269
Sau3AI GATC 2 cut(s) 56, 100
SchI GAGTC 1 cut(s) 233
SetI ASST 1 cut(s) 13
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 61
Sse9I AATT 2 cut(s) 251, 283
SsiI CCGC 1 cut(s) 193
TasI AATT 2 cut(s) 251, 283
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 2 cut(s) 70, 153
TseFI GTSAC 2 cut(s) 65, 180
TseI GCWGC 3 cut(s) 262, 265, 268
Tsp45I GTSAC 2 cut(s) 65, 180
TspDTI ATGAA 3 cut(s) 9, 156, 239
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 2 cut(s) 70, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.