MD04G1157500.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
24558065 .. 24558499
435 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1157500.v1.1.491

Sequence Viewer

Length: 435 bp
ATGCTTATGGAGCTTTCAACCCTTTCAAGTTCTCTAGACCTGTCTGACAATTATTTGACTGGTCCGATGCCCTTTGAGGTGGGTGATTTAGTGCATCTTACGGAGCTAAATGTATTAAGAAACAATTTATTAGGTGAAATCCCGAGCACCCTCGGCAGTTGTACTAGTTTGGAACGCTTGTGTTTGCAAGGTAATAAGTTTGAAGGAACAATTCCTCAATCTCTTAAGAATTTGAAAGGCTTGGAAAAACTTGATATTTCAAGCAACAACTTGTCTGGGCCGATTCCTGAATTCATAGGCAAGCTTGGTGCTCTCAAGTATCTCAATCTTTCGTATAATGATTTTGAGGGCGAGTTGCCTAAAGATGGTATTTTTGCAAATGCTAGTGGTGTTTCTATTCTTGGAAATCATAGGCTCTGTGGTGGAATCCCATAA

Protein Analysis

145

Amino Acids

15.48

Weight (kDa)

4.79

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 21 - 111 7e-09 Leucine-rich repeat region
LRR_4 PF12799 55 - 98 1.1e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 56 - 115 5.6e-10 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 229, 290
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 365
AflII CTTAAG 1 cut(s) 224
AgsI TTSAA 5 cut(s) 18, 27, 203, 235, 261
AhlI ACTAGT 1 cut(s) 164
AluBI AGCT 3 cut(s) 13, 106, 304
AluI AGCT 3 cut(s) 13, 106, 304
Alw21I GWGCWC 2 cut(s) 149, 313
Ama87I CYCGRG 1 cut(s) 142
AoxI GGCC 1 cut(s) 278
ApoI RAATTY 2 cut(s) 229, 290
AspS9I GGNCC 2 cut(s) 62, 278
AsuHPI GGTGA 2 cut(s) 95, 146
AvaI CYCGRG 1 cut(s) 142
AvaII GGWCC 1 cut(s) 62
Bbv12I GWGCWC 2 cut(s) 149, 313
BccI CCATC 1 cut(s) 359
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 3 cut(s) 35, 165, 384
BfrI CTTAAG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 62, 278
BmsI GCATC 2 cut(s) 57, 103
BpuEI CTTGAG 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse1I ACTGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 365
BseNI ACTGG 1 cut(s) 64
BshFI GGCC 1 cut(s) 280
BsiHKAI GWGCWC 2 cut(s) 149, 313
BsiHKCI CYCGRG 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 365
BsnI GGCC 1 cut(s) 280
BsoBI CYCGRG 1 cut(s) 142
Bsp1286I GDGCHC 2 cut(s) 149, 313
BspANI GGCC 1 cut(s) 280
BspTI CTTAAG 1 cut(s) 224
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 151
BstAFI CTTAAG 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 302
BstMWI GCNNNNNNNGC 2 cut(s) 10, 153
BsuRI GGCC 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 62, 278
Csp6I GTAC 1 cut(s) 162
CviJI RGCY 6 cut(s) 13, 106, 240, 280, 304, 415
CviKI_1 RGCY 6 cut(s) 13, 106, 240, 280, 304, 415
CviQI GTAC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 290
FaiI YATR 5 cut(s) 8, 296, 336, 411, 433
FspBI CTAG 3 cut(s) 35, 165, 384
HaeIII GGCC 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 2 cut(s) 283, 426
HphI GGTGA 2 cut(s) 95, 146
Hpy188I TCNGA 2 cut(s) 46, 66
Hpy188III TCNNGA 3 cut(s) 35, 142, 287
HpyAV CCTTC 1 cut(s) 197
HpyCH4V TGCA 3 cut(s) 94, 187, 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 153
LmnI GCTCC 2 cut(s) 10, 103
LpnPI CCDG 4 cut(s) 45, 53, 261, 300
LweI GCATC 2 cut(s) 57, 103
MaeI CTAG 3 cut(s) 35, 165, 384
MhlI GDGCHC 2 cut(s) 149, 313
MluCI AATT 5 cut(s) 49, 124, 210, 229, 290
MnlI CCTC 4 cut(s) 70, 161, 225, 340
MseI TTAA 2 cut(s) 116, 225
MspCI CTTAAG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 10, 153
NmeAIII GCCGAG 1 cut(s) 132
PfeI GAWTC 2 cut(s) 283, 426
PspPI GGNCC 2 cut(s) 62, 278
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 116, 225
Sau96I GGNCC 2 cut(s) 62, 278
SduI GDGCHC 2 cut(s) 149, 313
SetI ASST 7 cut(s) 15, 42, 81, 108, 136, 193, 306
SfaNI GCATC 2 cut(s) 57, 103
SinI GGWCC 1 cut(s) 62
SmlI CTYRAG 2 cut(s) 224, 314
SmoI CTYRAG 2 cut(s) 224, 314
SpeI ACTAGT 1 cut(s) 164
Sse9I AATT 5 cut(s) 49, 124, 210, 229, 290
SspMI CTAG 3 cut(s) 35, 165, 384
TasI AATT 5 cut(s) 49, 124, 210, 229, 290
TatI WGTACW 1 cut(s) 161
TfiI GAWTC 2 cut(s) 283, 426
Tru1I TTAA 2 cut(s) 116, 225
Tru9I TTAA 2 cut(s) 116, 225
TspDTI ATGAA 1 cut(s) 283
TspGWI ACGGA 1 cut(s) 116
Vha464I CTTAAG 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 2 cut(s) 229, 290
XbaI TCTAGA 1 cut(s) 34
XspI CTAG 3 cut(s) 35, 165, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.