Prupe.1G194200_v2.0.a1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000262
Physical Location & Seq
Reverse (-)
18341819 .. 18343860
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G194200.1

Sequence Viewer

Length: 381 bp
ATGGGCTATAGCCCAGAGCTTTTCACTGGAAAAAGGCCGACAGATGACATGTTCAAAGATGGTCTAAGCATTCACCAATTGGCAGCCATGGCTTTGCCTAACCATGTCATGGACATCGTTGATCCTTCGTTACTCCTCGAAACAGATGGTGAGGATGACGATGATGACAGATACGACAATGACATACAAGAAAAACCGATTACAAGATATCATGTTGGTGGTCAACTCCAAGCAAGAAGATTGGAAGAATGCTTCGTTTCAGTGATGCGTATAGGACTTTCATGCTCTGCAATGTCACAACCAGAGGGGATGTCCATGGATGTGGTGGTCAACAAAATGAAGACAATTAGAGACTCTTGTCTCGATTTAAGAAGAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

127

Amino Acids

14.23

Weight (kDa)

4.64

Isoelectric Point (pI)

68.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 109
AclWI GGATC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 109
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 1 cut(s) 55
AluBI AGCT 2 cut(s) 19, 378
AluI AGCT 2 cut(s) 19, 378
Alw26I GTCTC 2 cut(s) 345, 365
AlwI GGATC 1 cut(s) 116
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 65, 161
BbsI GAAGAC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 95
BccI CCATC 2 cut(s) 53, 140
BcoDI GTCTC 2 cut(s) 345, 365
BfaI CTAG 1 cut(s) 379
BfmI CTRYAG 1 cut(s) 7
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BmsI GCATC 1 cut(s) 255
BoxI GACNNNNGTC 1 cut(s) 357
BpiI GAAGAC 1 cut(s) 347
BsaJI CCNNGG 2 cut(s) 87, 315
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 31
Bse3DI GCAATG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 87, 315
BseGI GGATG 3 cut(s) 160, 315, 325
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMI GCAATG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 31
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 95
BshFI GGCC 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 345, 365
BsmI GAATGC 2 cut(s) 69, 254
BsnI GGCC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 121
Bsp19I CCATGG 2 cut(s) 87, 315
BspANI GGCC 1 cut(s) 37
BspPI GGATC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 297
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 87, 315
BssMI GATC 1 cut(s) 121
BssT1I CCWWGG 2 cut(s) 87, 315
BstDEI CTNAG 1 cut(s) 65
BstDSI CCRYGG 2 cut(s) 87, 315
BstF5I GGATG 3 cut(s) 160, 315, 325
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 2 cut(s) 345, 365
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 52
BstPAI GACNNNNGTC 1 cut(s) 357
BstSFI CTRYAG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 95
BstV2I GAAGAC 1 cut(s) 347
BstXI CCANNNNNNTGG 1 cut(s) 322
BsuRI GGCC 1 cut(s) 37
BtgI CCRYGG 2 cut(s) 87, 315
BtsCI GGATG 3 cut(s) 160, 315, 325
BtsIMutI CAGTG 2 cut(s) 24, 267
CviAII CATG 7 cut(s) 49, 88, 104, 109, 212, 282, 316
CviJI RGCY 7 cut(s) 6, 12, 19, 37, 86, 92, 378
CviKI_1 RGCY 7 cut(s) 6, 12, 19, 37, 86, 92, 378
DdeI CTNAG 1 cut(s) 65
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eco130I CCWWGG 2 cut(s) 87, 315
Eco32I GATATC 1 cut(s) 209
EcoRV GATATC 1 cut(s) 209
EcoT14I CCWWGG 2 cut(s) 87, 315
ErhI CCWWGG 2 cut(s) 87, 315
FaeI CATG 7 cut(s) 52, 91, 107, 112, 215, 285, 319
FatI CATG 7 cut(s) 48, 87, 103, 108, 211, 281, 315
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 3 cut(s) 167, 322, 332
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 379
GluI GCNGC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 37
Hin1II CATG 7 cut(s) 52, 91, 107, 112, 215, 285, 319
HincII GTYRAC 2 cut(s) 224, 331
HindII GTYRAC 2 cut(s) 224, 331
HinfI GANTC 1 cut(s) 353
HphI GGTGA 2 cut(s) 65, 161
Hpy166II GTNNAC 2 cut(s) 224, 331
Hpy188III TCNNGA 1 cut(s) 362
Hpy8I GTNNAC 2 cut(s) 224, 331
HpyAV CCTTC 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 65
Hsp92II CATG 7 cut(s) 52, 91, 107, 112, 215, 285, 319
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 3 cut(s) 12, 27, 315
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 1 cut(s) 255
MaeI CTAG 1 cut(s) 379
MaeIII GTNAC 2 cut(s) 129, 294
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 3 cut(s) 249, 257, 352
MfeI CAATTG 1 cut(s) 77
MluCI AATT 2 cut(s) 77, 345
MlyI GAGTC 1 cut(s) 347
MnlI CCTC 3 cut(s) 145, 146, 298
MseI TTAA 1 cut(s) 368
MslI CAYNNNNRTG 2 cut(s) 216, 320
MunI CAATTG 1 cut(s) 77
Mva1269I GAATGC 2 cut(s) 69, 254
MwoI GCNNNNNNNGC 1 cut(s) 89
NcoI CCATGG 2 cut(s) 87, 315
NdeII GATC 1 cut(s) 121
NlaIII CATG 7 cut(s) 52, 91, 107, 112, 215, 285, 319
NmuCI GTSAC 1 cut(s) 294
NspI RCATGY 1 cut(s) 52
PciI ACATGT 1 cut(s) 48
PctI GAATGC 2 cut(s) 69, 254
PflMI CCANNNNNTGG 1 cut(s) 109
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
PscI ACATGT 1 cut(s) 48
PshAI GACNNNNGTC 1 cut(s) 357
RseI CAYNNNNRTG 2 cut(s) 216, 320
SaqAI TTAA 1 cut(s) 368
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 1 cut(s) 121
SchI GAGTC 1 cut(s) 347
SetI ASST 2 cut(s) 21, 380
SfaNI GCATC 1 cut(s) 255
SfcI CTRYAG 1 cut(s) 7
SmiMI CAYNNNNRTG 2 cut(s) 216, 320
Sse9I AATT 2 cut(s) 77, 345
SspMI CTAG 1 cut(s) 379
StyI CCWWGG 2 cut(s) 87, 315
TaqI TCGA 2 cut(s) 138, 363
TasI AATT 2 cut(s) 77, 345
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TscAI CASTG 2 cut(s) 31, 267
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 2 cut(s) 270, 353
TspRI CASTG 2 cut(s) 31, 267
Van91I CCANNNNNTGG 1 cut(s) 109
XceI RCATGY 1 cut(s) 52
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
XspI CTAG 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.