pycom12g16200

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
18603680 .. 18605058
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g16200.3

Sequence Viewer

Length: 1095 bp
ATGATTTTGAGGGCGAGTTTTCTTGGAAATCATAGGCTCTGTGGTGGCATCCCACAATTACATCTACCTGCATGCCCTGAAAATAAACACCATTCATCACGTGGACTACTTTCCCCAAAAGTAGTCATCCCTATATCTTGTGCACTTGCATTCATAATTGCTCTATCATGCTTCTTCAGTGCTCGTTCAACGTTGAAAAAGTCAAGAGAAGGACTTGTAACTTCACATTCTTATAAGGATTGGAAATTAGGTGTTTCCTACTCACAACTTGTTGAATCGACTAATGGTTTCTCGGTGGATAATTTGATTGGTTCGGGAAGTTTTGGTTCTGTTTATAAAGGGGTAATTCCTAGCGATGGAACGGTAGTTGCTGTTAAGGTATTAAACCTTCAACAACAAGGAGCGTCCAAGAGTTTCAATGATGAATGCAAAGCTTTAAGAAGTGTCAGGCACAGAAATCTTCTCAAGATCATAACTGCATGCTCGAGCATTGATAATCATGGTAGAGACTTCAAAAGTCTAGTCTTCGAGTTCATGCCAAATGGAAGTCTTGACTCGTGGTTGCATCCTAGAGATGAGGAGCAATCTCCAAGTAAGAGATTGAATTTTATGCAAAGATTGAACATAGCCATTGATGTTGCTTCTGCGTTAGATTACCTCCACAACCATTGTGAAACGTCCATTGTTCATTGTGATCTAAAGCCGAGCAATGTACTTCTTGATGAAGACATGGTAGCCCGTGTTGGGGACTTTGGTTTAGCAAGGTTTCTCTTGGAAGCATCAAATGATCCTTCCATCAGTCAAACAATGTCATCGCAACTAAAGGGTTCTATAGGTTACATTCCTCCAGAGTATGGCATGGGAGGCCAAGTTTCCATACAGGGAGATGTTTACAGCTACGGGATACTTTTGCTAGAAATGTTCACAGGAAAAACACCTACTGATGACATGTTCATCGAAGGTCTAAGCATTTACAAATTCGCAGCCATGGCTTTGCCCGACCATGTCATGGACGTTGTTGATCCTTCATTGCTCCTCGACCTCGAAGCTGATGGTAGTGTTAACGATGACAGATACAAAAGGACTGCACTGTAG

Protein Analysis

365

Amino Acids

39.94

Weight (kDa)

6.17

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 234, 336
Acc36I ACCTGC 1 cut(s) 76
AccB7I CCANNNNNTGG 2 cut(s) 854, 1009
AclI AACGTT 1 cut(s) 191
AclWI GGATC 2 cut(s) 782, 1016
AcsI RAATTY 2 cut(s) 604, 977
AcuI CTGAAG 1 cut(s) 160
AcvI CACGTG 1 cut(s) 101
AfaI GTAC 1 cut(s) 714
AfiI CCNNNNNNNGG 5 cut(s) 356, 744, 745, 854, 1009
AflIII ACRYGT 1 cut(s) 948
AgsI TTSAA 8 cut(s) 189, 196, 275, 392, 418, 514, 604, 622
AluBI AGCT 3 cut(s) 434, 897, 1049
AluI AGCT 3 cut(s) 434, 897, 1049
Alw21I GWGCWC 2 cut(s) 145, 184
Alw26I GTCTC 1 cut(s) 501
Alw44I GTGCAC 1 cut(s) 141
AlwI GGATC 2 cut(s) 782, 1016
Ama87I CYCGRG 1 cut(s) 484
AoxI GGCC 1 cut(s) 865
ApaLI GTGCAC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 983
ApoI RAATTY 2 cut(s) 604, 977
ArsI GACNNNNNNTTYG 2 cut(s) 507, 539
AvaI CYCGRG 1 cut(s) 484
BaeGI GKGCMC 1 cut(s) 145
BarI GAAGNNNNNNTAC 2 cut(s) 372, 404
BauI CACGAG 1 cut(s) 556
BbrPI CACGTG 1 cut(s) 101
BbsI GAAGAC 2 cut(s) 517, 732
Bbv12I GWGCWC 2 cut(s) 145, 184
BbvI GCAGC 1 cut(s) 995
BccI CCATC 3 cut(s) 350, 803, 1046
BciVI GTATCC 1 cut(s) 897
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 4 cut(s) 351, 521, 570, 914
BfmI CTRYAG 2 cut(s) 831, 1091
BfuAI ACCTGC 1 cut(s) 76
BfuI GTATCC 1 cut(s) 897
BisI GCNGC 1 cut(s) 984
BlsI GCNGC 1 cut(s) 985
BmeT110I CYCGRG 1 cut(s) 484
BmsI GCATC 3 cut(s) 57, 574, 788
BpiI GAAGAC 2 cut(s) 517, 732
BpmI CTGGAG 1 cut(s) 831
BpuEI CTTGAG 1 cut(s) 449
BsaAI YACGTR 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 987
BsaXI ACNNNNNCTCC 2 cut(s) 855, 885
Bsc4I CCNNNNNNNGG 5 cut(s) 356, 744, 745, 854, 1009
Bse3DI GCAATG 2 cut(s) 715, 1028
BseDI CCNNGG 1 cut(s) 987
BseGI GGATG 3 cut(s) 48, 126, 565
BseLI CCNNNNNNNGG 5 cut(s) 356, 744, 745, 854, 1009
BseMI GCAATG 2 cut(s) 715, 1028
BseRI GAGGAG 2 cut(s) 593, 1025
BseSI GKGCMC 1 cut(s) 145
BseXI GCAGC 1 cut(s) 995
BsgI GTGCAG 1 cut(s) 1071
BshFI GGCC 1 cut(s) 867
BsiHKAI GWGCWC 2 cut(s) 145, 184
BsiHKCI CYCGRG 1 cut(s) 484
BslFI GGGAC 1 cut(s) 761
BslI CCNNNNNNNGG 5 cut(s) 356, 744, 745, 854, 1009
BsmAI GTCTC 1 cut(s) 501
BsmFI GGGAC 1 cut(s) 761
BsmI GAATGC 2 cut(s) 149, 431
BsnI GGCC 1 cut(s) 867
BsoBI CYCGRG 1 cut(s) 484
Bsp1286I GDGCHC 2 cut(s) 145, 184
Bsp143I GATC 4 cut(s) 468, 694, 787, 1021
Bsp19I CCATGG 1 cut(s) 987
BspANI GGCC 1 cut(s) 867
BspMI ACCTGC 1 cut(s) 76
BspPI GGATC 2 cut(s) 782, 1016
BsrDI GCAATG 2 cut(s) 715, 1028
BssECI CCNNGG 1 cut(s) 987
BssMI GATC 4 cut(s) 468, 694, 787, 1021
BssSI CACGAG 1 cut(s) 556
BssT1I CCWWGG 1 cut(s) 987
Bst2BI CACGAG 1 cut(s) 556
Bst4CI ACNGT 2 cut(s) 364, 1092
BstBAI YACGTR 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 73, 481
BstDEI CTNAG 1 cut(s) 965
BstDSI CCRYGG 1 cut(s) 987
BstF5I GGATG 3 cut(s) 48, 126, 565
BstKTI GATC 4 cut(s) 471, 697, 790, 1024
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 4 cut(s) 468, 694, 787, 1021
BstMWI GCNNNNNNNGC 2 cut(s) 864, 989
BstNSI RCATGY 3 cut(s) 75, 483, 952
BstSFI CTRYAG 2 cut(s) 831, 1091
BstSLI GKGCMC 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 995
BstV2I GAAGAC 2 cut(s) 517, 732
BsuI GTATCC 1 cut(s) 897
BsuRI GGCC 1 cut(s) 867
BtgI CCRYGG 1 cut(s) 987
BtgZI GCGATG 2 cut(s) 369, 798
BtsCI GGATG 3 cut(s) 48, 126, 565
BtsIMutI CAGTG 2 cut(s) 184, 1088
BveI ACCTGC 1 cut(s) 76
Cac8I GCNNGC 2 cut(s) 73, 481
CseI GACGC 1 cut(s) 393
Csp6I GTAC 1 cut(s) 713
CspCI CAANNNNNGTGG 2 cut(s) 650, 685
CviQI GTAC 1 cut(s) 713
DdeI CTNAG 1 cut(s) 965
DpnI GATC 4 cut(s) 470, 696, 789, 1023
DpnII GATC 4 cut(s) 468, 694, 787, 1021
Eco130I CCWWGG 1 cut(s) 987
Eco57I CTGAAG 1 cut(s) 160
Eco72I CACGTG 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 987
ErhI CCWWGG 1 cut(s) 987
FaqI GGGAC 1 cut(s) 761
Fnu4HI GCNGC 1 cut(s) 984
FokI GGATG 3 cut(s) 35, 113, 552
Fsp4HI GCNGC 1 cut(s) 984
FspBI CTAG 4 cut(s) 351, 521, 570, 914
GluI GCNGC 1 cut(s) 984
GsuI CTGGAG 1 cut(s) 831
HaeIII GGCC 1 cut(s) 867
HgaI GACGC 1 cut(s) 393
HincII GTYRAC 1 cut(s) 1063
HindII GTYRAC 1 cut(s) 1063
HindIII AAGCTT 1 cut(s) 432
HinfI GANTC 2 cut(s) 275, 554
HpaI GTTAAC 1 cut(s) 1063
Hpy166II GTNNAC 5 cut(s) 104, 143, 892, 924, 1063
Hpy188III TCNNGA 6 cut(s) 204, 315, 466, 551, 719, 848
Hpy8I GTNNAC 5 cut(s) 104, 143, 892, 924, 1063
HpyAV CCTTC 5 cut(s) 203, 398, 801, 953, 1035
HpyCH4III ACNGT 2 cut(s) 364, 1092
HpyCH4IV ACGT 4 cut(s) 100, 191, 677, 1014
HpyCH4V TGCA 8 cut(s) 71, 143, 149, 429, 479, 565, 613, 1088
HpyF10VI GCNNNNNNNGC 2 cut(s) 864, 989
HpyF3I CTNAG 1 cut(s) 965
HpySE526I ACGT 4 cut(s) 100, 191, 677, 1014
KspAI GTTAAC 1 cut(s) 1063
Kzo9I GATC 4 cut(s) 468, 694, 787, 1021
LmnI GCTCC 3 cut(s) 401, 580, 1038
LpnPI CCDG 6 cut(s) 81, 90, 433, 861, 866, 912
Lsp1109I GCAGC 1 cut(s) 995
LweI GCATC 3 cut(s) 57, 574, 788
MaeI CTAG 4 cut(s) 351, 521, 570, 914
MaeII ACGT 4 cut(s) 100, 191, 677, 1014
MaeIII GTNAC 2 cut(s) 217, 836
MalI GATC 4 cut(s) 470, 696, 789, 1023
MboI GATC 4 cut(s) 468, 694, 787, 1021
MboII GAAGA 4 cut(s) 166, 452, 517, 737
MhlI GDGCHC 2 cut(s) 145, 184
MluCI AATT 7 cut(s) 56, 156, 245, 301, 345, 604, 977
MlyI GAGTC 1 cut(s) 548
MnlI CCTC 7 cut(s) 3, 571, 668, 855, 857, 1046, 1052
MseI TTAA 4 cut(s) 375, 383, 437, 1062
Mva1269I GAATGC 2 cut(s) 149, 431
MwoI GCNNNNNNNGC 2 cut(s) 864, 989
NcoI CCATGG 1 cut(s) 987
NdeII GATC 4 cut(s) 468, 694, 787, 1021
NmeAIII GCCGAG 1 cut(s) 729
NspI RCATGY 3 cut(s) 75, 483, 952
PaeI GCATGC 2 cut(s) 75, 483
PaeR7I CTCGAG 1 cut(s) 484
PciI ACATGT 1 cut(s) 948
PctI GAATGC 2 cut(s) 149, 431
PfeI GAWTC 1 cut(s) 275
PflFI GACNNNGTC 1 cut(s) 1004
PflMI CCANNNNNTGG 2 cut(s) 854, 1009
PkrI GCNGC 1 cut(s) 985
PleI GAGTC 1 cut(s) 548
PmaCI CACGTG 1 cut(s) 101
PmlI CACGTG 1 cut(s) 101
PpsI GAGTC 1 cut(s) 548
Ppu21I YACGTR 1 cut(s) 101
PscI ACATGT 1 cut(s) 948
PsiI TTATAA 2 cut(s) 234, 336
Psp1406I AACGTT 1 cut(s) 191
PspCI CACGTG 1 cut(s) 101
PspXI VCTCGAGB 1 cut(s) 484
PsyI GACNNNGTC 1 cut(s) 1004
RsaI GTAC 1 cut(s) 714
RsaNI GTAC 1 cut(s) 713
SaqAI TTAA 4 cut(s) 375, 383, 437, 1062
SatI GCNGC 1 cut(s) 984
Sau3AI GATC 4 cut(s) 468, 694, 787, 1021
SchI GAGTC 1 cut(s) 548
SduI GDGCHC 2 cut(s) 145, 184
SfaNI GCATC 3 cut(s) 57, 574, 788
SfcI CTRYAG 2 cut(s) 831, 1091
Sfr274I CTCGAG 1 cut(s) 484
SlaI CTCGAG 1 cut(s) 484
SmlI CTYRAG 2 cut(s) 464, 484
SmoI CTYRAG 2 cut(s) 464, 484
SphI GCATGC 2 cut(s) 75, 483
Sse9I AATT 7 cut(s) 56, 156, 245, 301, 345, 604, 977
SspMI CTAG 4 cut(s) 351, 521, 570, 914
StyI CCWWGG 1 cut(s) 987
TaaI ACNGT 2 cut(s) 364, 1092
TaiI ACGT 4 cut(s) 103, 194, 680, 1017
TaqI TCGA 6 cut(s) 278, 485, 528, 957, 1038, 1044
TasI AATT 7 cut(s) 56, 156, 245, 301, 345, 604, 977
TatI WGTACW 1 cut(s) 712
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 4 cut(s) 375, 383, 437, 1062
Tru9I TTAA 4 cut(s) 375, 383, 437, 1062
TscAI CASTG 2 cut(s) 184, 1095
TseI GCWGC 1 cut(s) 983
TspDTI ATGAA 8 cut(s) 84, 142, 438, 523, 677, 738, 943, 1017
TspRI CASTG 2 cut(s) 184, 1095
Tth111I GACNNNGTC 1 cut(s) 1004
Van91I CCANNNNNTGG 2 cut(s) 854, 1009
VneI GTGCAC 1 cut(s) 141
XapI RAATTY 2 cut(s) 604, 977
XceI RCATGY 3 cut(s) 75, 483, 952
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XhoI CTCGAG 1 cut(s) 484
XspI CTAG 4 cut(s) 351, 521, 570, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.