Rorug03G0064500

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000262
Physical Location & Seq
Forward (+)
4764044 .. 4765759
1716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0064500.1

Sequence Viewer

Length: 564 bp
ATGCAGGATATGGGGTGTGTAACCGGTTCTGTCCAAGAAATGGGGGCAATCCTATCCCCAGATGTTGTTAAAACGCAATGCGTGGCGGATAGACCCGCCATCACGAAGAACAACAAGAAAAACCCTTTTGACAAGCTTAGAAGGTGGTGGAAAGGTGTTCATTTATTACAGAAGGCATACATACTTATTCCTGTAAATGACATGTTTCATTGGAGTCTAGTCATTATCTGTATCCCTGACAAGGAAGAATCACAACCAATTGTTCTTCATTTAGATTCGTTAGGACTCCACTGTAGCAGATCAATTTTTCAAAATATTACAAGCTTTTTGAAAGAAGAGTGCTGCTATTTGGATCATGAAGGTGGTCTTTCAGAACTTCCAATTTCAGGCTATTGGAAATACCTTTGTGACCATATTGAGGAGAAAGTTCTCGAGGTCCCACGACAGAAAAATCACTATGATTGCGGTCTCTTTGTACTTCTCTTTATGGAGCGCTTCATTGAAGAGGCCCCTGAAAGGCTGCAGAAGAAAGATTTAGCAGTGGTACTCTATTCCGCTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

187

Amino Acids

21.58

Weight (kDa)

5.97

Isoelectric Point (pI)

60.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 37 - 179 1.6e-22 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 40
AciI CCGC 4 cut(s) 86, 96, 465, 555
AclWI GGATC 1 cut(s) 360
AfaI GTAC 2 cut(s) 477, 546
AfeI AGCGCT 1 cut(s) 494
AfiI CCNNNNNNNGG 5 cut(s) 40, 241, 386, 418, 516
AflIII ACRYGT 1 cut(s) 201
AgeI ACCGGT 1 cut(s) 23
AgsI TTSAA 3 cut(s) 311, 331, 503
AluBI AGCT 2 cut(s) 136, 324
AluI AGCT 2 cut(s) 136, 324
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 1 cut(s) 360
Ama87I CYCGRG 1 cut(s) 431
Aor51HI AGCGCT 1 cut(s) 494
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 2 cut(s) 342, 520
AsiGI ACCGGT 1 cut(s) 23
AspLEI GCGC 1 cut(s) 495
AspS9I GGNCC 2 cut(s) 436, 508
AvaI CYCGRG 1 cut(s) 431
AvaII GGWCC 1 cut(s) 436
BbvI GCAGC 2 cut(s) 329, 507
BccI CCATC 1 cut(s) 107
BciVI GTATCC 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 1 cut(s) 218
BfmI CTRYAG 2 cut(s) 292, 521
BfoI RGCGCY 1 cut(s) 496
BfuI GTATCC 1 cut(s) 242
BisI GCNGC 2 cut(s) 343, 521
BlsI GCNGC 2 cut(s) 344, 522
Bme18I GGWCC 1 cut(s) 436
BmeT110I CYCGRG 1 cut(s) 431
BmgT120I GGNCC 2 cut(s) 436, 508
BmiI GGNNCC 2 cut(s) 438, 510
BsaI GGTCTC 1 cut(s) 473
BsaWI WCCGGW 1 cut(s) 23
Bsc4I CCNNNNNNNGG 5 cut(s) 40, 241, 386, 418, 516
Bse118I RCCGGY 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 83
BseLI CCNNNNNNNGG 5 cut(s) 40, 241, 386, 418, 516
BseMI GCAATG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 2 cut(s) 329, 507
BshFI GGCC 1 cut(s) 509
BshTI ACCGGT 1 cut(s) 23
BsiHKCI CYCGRG 1 cut(s) 431
BsiSI CCGG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 5 cut(s) 40, 241, 386, 418, 516
BsmAI GTCTC 1 cut(s) 473
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 1 cut(s) 509
Bso31I GGTCTC 1 cut(s) 473
BsoBI CYCGRG 1 cut(s) 431
Bsp143I GATC 2 cut(s) 299, 352
BspACI CCGC 4 cut(s) 86, 96, 465, 555
BspANI GGCC 1 cut(s) 509
BspHI TCATGA 1 cut(s) 355
BspLI GGNNCC 2 cut(s) 438, 510
BspMAI CTGCAG 1 cut(s) 525
BspPI GGATC 1 cut(s) 360
BspTNI GGTCTC 1 cut(s) 473
BsrDI GCAATG 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 23
BssMI GATC 2 cut(s) 299, 352
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 2 cut(s) 330, 498
BstDEI CTNAG 1 cut(s) 137
BstH2I RGCGCY 1 cut(s) 496
BstHHI GCGC 1 cut(s) 495
BstKTI GATC 2 cut(s) 302, 355
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 2 cut(s) 299, 352
BstNSI RCATGY 1 cut(s) 205
BstSFI CTRYAG 2 cut(s) 292, 521
BstV1I GCAGC 2 cut(s) 329, 507
BsuI GTATCC 1 cut(s) 242
BsuRI GGCC 1 cut(s) 509
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 2 cut(s) 289, 546
CciI TCATGA 1 cut(s) 355
CfoI GCGC 1 cut(s) 495
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 436, 508
Csp6I GTAC 2 cut(s) 476, 545
CspAI ACCGGT 1 cut(s) 23
CviAII CATG 2 cut(s) 202, 356
CviJI RGCY 5 cut(s) 136, 324, 390, 509, 520
CviKI_1 RGCY 5 cut(s) 136, 324, 390, 509, 520
CviQI GTAC 2 cut(s) 476, 545
DdeI CTNAG 1 cut(s) 137
DpnI GATC 2 cut(s) 301, 354
DpnII GATC 2 cut(s) 299, 352
Eam1104I CTCTTC 2 cut(s) 330, 498
EarI CTCTTC 2 cut(s) 330, 498
EciI GGCGGA 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 473
Eco47I GGWCC 1 cut(s) 436
Eco47III AGCGCT 1 cut(s) 494
Eco88I CYCGRG 1 cut(s) 431
EcoO109I RGGNCCY 2 cut(s) 436, 508
FaeI CATG 2 cut(s) 205, 359
FaiI YATR 9 cut(s) 11, 178, 182, 203, 357, 414, 459, 488, 562
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FaqI GGGAC 1 cut(s) 422
FatI CATG 2 cut(s) 201, 355
FauI CCCGC 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 343, 521
Fsp4HI GCNGC 2 cut(s) 343, 521
FspBI CTAG 1 cut(s) 218
GlaI GCGC 1 cut(s) 494
GluI GCNGC 2 cut(s) 343, 521
HaeII RGCGCY 1 cut(s) 496
HaeIII GGCC 1 cut(s) 509
HapII CCGG 1 cut(s) 24
HhaI GCGC 1 cut(s) 495
Hin1II CATG 2 cut(s) 205, 359
Hin6I GCGC 1 cut(s) 493
HinP1I GCGC 1 cut(s) 493
HindIII AAGCTT 2 cut(s) 134, 322
HinfI GANTC 4 cut(s) 214, 248, 275, 285
HpaII CCGG 1 cut(s) 24
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 3 cut(s) 103, 356, 431
HpyAV CCTTC 3 cut(s) 135, 166, 353
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4V TGCA 2 cut(s) 4, 523
HpyF3I CTNAG 1 cut(s) 137
Hsp92II CATG 2 cut(s) 205, 359
HspAI GCGC 1 cut(s) 493
Kzo9I GATC 2 cut(s) 299, 352
LmnI GCTCC 1 cut(s) 490
LpnPI CCDG 6 cut(s) 37, 72, 204, 249, 372, 525
Lsp1109I GCAGC 2 cut(s) 329, 507
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 19, 407
MalI GATC 2 cut(s) 301, 354
MboI GATC 2 cut(s) 299, 352
MboII GAAGA 6 cut(s) 118, 257, 257, 347, 515, 538
MfeI CAATTG 1 cut(s) 258
MluCI AATT 3 cut(s) 258, 303, 381
MlyI GAGTC 2 cut(s) 223, 279
MnlI CCTC 3 cut(s) 412, 427, 499
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 360
MspI CCGG 1 cut(s) 24
MunI CAATTG 1 cut(s) 258
NdeII GATC 2 cut(s) 299, 352
NlaIII CATG 2 cut(s) 205, 359
NlaIV GGNNCC 2 cut(s) 438, 510
NmuCI GTSAC 1 cut(s) 407
NspI RCATGY 1 cut(s) 205
PaeR7I CTCGAG 1 cut(s) 431
PagI TCATGA 1 cut(s) 355
PciI ACATGT 1 cut(s) 201
PfeI GAWTC 2 cut(s) 248, 275
PflMI CCANNNNNTGG 1 cut(s) 40
PinAI ACCGGT 1 cut(s) 23
PkrI GCNGC 2 cut(s) 344, 522
PleI GAGTC 2 cut(s) 222, 279
PpsI GAGTC 2 cut(s) 222, 279
PpuMI RGGWCCY 1 cut(s) 436
PscI ACATGT 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 436
PspN4I GGNNCC 2 cut(s) 438, 510
PspPI GGNCC 2 cut(s) 436, 508
PspPPI RGGWCCY 1 cut(s) 436
PstI CTGCAG 1 cut(s) 525
RsaI GTAC 2 cut(s) 477, 546
RsaNI GTAC 2 cut(s) 476, 545
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 2 cut(s) 343, 521
Sau3AI GATC 2 cut(s) 299, 352
Sau96I GGNCC 2 cut(s) 436, 508
SchI GAGTC 2 cut(s) 223, 279
SetI ASST 7 cut(s) 138, 146, 157, 326, 364, 405, 438
SfcI CTRYAG 2 cut(s) 292, 521
Sfr274I CTCGAG 1 cut(s) 431
SinI GGWCC 1 cut(s) 436
SlaI CTCGAG 1 cut(s) 431
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 3 cut(s) 258, 303, 381
SsiI CCGC 4 cut(s) 86, 96, 465, 555
SspI AATATT 1 cut(s) 316
SspMI CTAG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 293
TaqI TCGA 1 cut(s) 432
TasI AATT 3 cut(s) 258, 303, 381
TatI WGTACW 1 cut(s) 475
TfiI GAWTC 2 cut(s) 248, 275
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 2 cut(s) 296, 546
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 2 cut(s) 342, 520
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 5 cut(s) 149, 197, 257, 372, 487
TspRI CASTG 2 cut(s) 296, 546
Van91I CCANNNNNTGG 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 436
XceI RCATGY 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 431
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.