pycom04g10560

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
13255581 .. 13256410
830 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g10560.1

Sequence Viewer

Length: 741 bp
ATGGTAAATGGAAGCCTAGAAATGTGGTTGCATCCGAGAAATGACGAGCACACTCAAAGTAAGAGATTGAGCCTTGTCCAAAGACTCAATATTGCAATCGACGTTGGTTCTGCATTGGATTATCTCCACCACCGTTGCGAAACTTCAATTGTTCATTGTGATATAAAGCCAAATAATGTTCTTCTTAACGAAGATATGGTAGCTCATGTTGGTGACTTTGGTTTAGCAAGGTTCCTCTTGGAGGCGTCTAATGATCCCGCTCAAAGTCAATCCATATCAACCGGGTTAAAGGGTTCAATAGGCTACATTCCTCCAGAGTATGGCATGGGAGGCCAAGTTTCCATCCTTGGAGATGTTTATAGTTTTGGAATACTATTGCTAGAAATGTTCACAGGAAGACGACCTACAGATGACATGTTCAAAGATGGTTTGAGCATTCACCAGTTCATTGCCATGGCGATGCTTGACCATGCCATGGACATAGTTGACCCATTGCTGCTAGTCGAATGTGAAGATGCAGATGTTGATGGAAGCCCAATTCAAGCAAGAAGGTTGGTGGAATGCTCAATTTTAGTGATGCAAATTGGACTCTCATGCTCTGCCACATCACCGTCAGAGCGAATGTTTATGGATGCTGTTGTGAACAAATTAAAGACAATTAGAGATTCATATCTCAACTTAAGAGGTAGAGGCAAGAAATATAAATGTGAGAGTTCCGTTCTCCTAGACCCCGTGGTCTAA

Protein Analysis

247

Amino Acids

27.23

Weight (kDa)

5.2

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 141 1e-21 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 19 - 150 6.4e-21 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 734
AccB7I CCANNNNNTGG 2 cut(s) 320, 475
AccBSI CCGCTC 1 cut(s) 260
AciI CCGC 1 cut(s) 258
AclWI GGATC 1 cut(s) 248
AcyI GRCGYC 1 cut(s) 245
AfiI CCNNNNNNNGG 3 cut(s) 241, 320, 475
AflII CTTAAG 1 cut(s) 679
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 4 cut(s) 147, 297, 421, 542
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
Alw21I GWGCWC 1 cut(s) 51
AlwI GGATC 1 cut(s) 248
AoxI GGCC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 496
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 3 cut(s) 224, 431, 600
BarI GAAGNNNNNNTAC 2 cut(s) 388, 420
BbsI GAAGAC 1 cut(s) 403
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 483
BccI CCATC 3 cut(s) 350, 419, 521
BcnI CCSGG 1 cut(s) 283
BfaI CTAG 4 cut(s) 17, 380, 500, 725
BfmI CTRYAG 1 cut(s) 405
BfrI CTTAAG 1 cut(s) 679
BisI GCNGC 1 cut(s) 497
BlsI GCNGC 1 cut(s) 498
Bme1390I CCNGG 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 283
BmsI GCATC 5 cut(s) 40, 450, 505, 567, 622
BpiI GAAGAC 1 cut(s) 403
BpmI CTGGAG 1 cut(s) 297
BpuMI CCSGG 1 cut(s) 283
BsaBI GATNNNNATC 1 cut(s) 669
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 4 cut(s) 346, 453, 474, 732
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 320, 475
Bse1I ACTGG 1 cut(s) 442
Bse3DI GCAATG 2 cut(s) 447, 491
Bse8I GATNNNNATC 1 cut(s) 669
BseDI CCNNGG 4 cut(s) 346, 453, 474, 732
BseGI GGATG 3 cut(s) 31, 342, 637
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 3 cut(s) 241, 320, 475
BseMI GCAATG 2 cut(s) 447, 491
BseNI ACTGG 1 cut(s) 442
BseXI GCAGC 1 cut(s) 483
BshFI GGCC 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 1 cut(s) 282
BslI CCNNNNNNNGG 3 cut(s) 241, 320, 475
BsmI GAATGC 2 cut(s) 435, 566
BsnI GGCC 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 1 cut(s) 253
Bsp19I CCATGG 2 cut(s) 453, 474
BspACI CCGC 1 cut(s) 258
BspANI GGCC 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 233
BspPI GGATC 1 cut(s) 248
BspTI CTTAAG 1 cut(s) 679
BsrBI CCGCTC 1 cut(s) 260
BsrDI GCAATG 2 cut(s) 447, 491
BsrI ACTGG 1 cut(s) 442
BssECI CCNNGG 4 cut(s) 346, 453, 474, 732
BssMI GATC 1 cut(s) 253
BssNI GRCGYC 1 cut(s) 245
BssT1I CCWWGG 3 cut(s) 346, 453, 474
Bst4CI ACNGT 2 cut(s) 134, 612
BstACI GRCGYC 1 cut(s) 245
BstAFI CTTAAG 1 cut(s) 679
BstDSI CCRYGG 3 cut(s) 453, 474, 732
BstENI CCTNNNNNAGG 1 cut(s) 239
BstF5I GGATG 3 cut(s) 31, 342, 637
BstKTI GATC 1 cut(s) 256
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 1 cut(s) 281
BstSFI CTRYAG 1 cut(s) 405
BstV1I GCAGC 1 cut(s) 483
BstV2I GAAGAC 1 cut(s) 403
BsuRI GGCC 1 cut(s) 333
BtgI CCRYGG 3 cut(s) 453, 474, 732
BtgZI GCGATG 1 cut(s) 473
BtsCI GGATG 3 cut(s) 31, 342, 637
CseI GACGC 1 cut(s) 234
CspCI CAANNNNNGTGG 2 cut(s) 116, 151
CviAII CATG 7 cut(s) 206, 325, 415, 454, 470, 475, 594
CviJI RGCY 7 cut(s) 15, 72, 169, 203, 303, 333, 534
CviKI_1 RGCY 7 cut(s) 15, 72, 169, 203, 303, 333, 534
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
DrdI GACNNNNNNGTC 1 cut(s) 734
DseDI GACNNNNNNGTC 1 cut(s) 734
Eco130I CCWWGG 3 cut(s) 346, 453, 474
EcoNI CCTNNNNNAGG 1 cut(s) 239
EcoT14I CCWWGG 3 cut(s) 346, 453, 474
ErhI CCWWGG 3 cut(s) 346, 453, 474
FaeI CATG 7 cut(s) 209, 328, 418, 457, 473, 478, 597
FatI CATG 7 cut(s) 205, 324, 414, 453, 469, 474, 593
FauI CCCGC 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 497
FokI GGATG 3 cut(s) 18, 329, 644
Fsp4HI GCNGC 1 cut(s) 497
FspBI CTAG 4 cut(s) 17, 380, 500, 725
GluI GCNGC 1 cut(s) 497
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 1 cut(s) 333
HapII CCGG 1 cut(s) 282
HgaI GACGC 1 cut(s) 234
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 7 cut(s) 209, 328, 418, 457, 473, 478, 597
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 3 cut(s) 84, 588, 665
HpaII CCGG 1 cut(s) 282
HphI GGTGA 3 cut(s) 224, 431, 600
Hpy166II GTNNAC 3 cut(s) 390, 487, 643
Hpy188I TCNGA 2 cut(s) 36, 616
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 3 cut(s) 390, 487, 643
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 543
HpyCH4III ACNGT 2 cut(s) 134, 612
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 5 cut(s) 31, 95, 113, 518, 580
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 7 cut(s) 209, 328, 418, 457, 473, 478, 597
Kzo9I GATC 1 cut(s) 253
LpnPI CCDG 4 cut(s) 295, 327, 378, 455
Lsp1109I GCAGC 1 cut(s) 483
LweI GCATC 5 cut(s) 40, 450, 505, 567, 622
MaeI CTAG 4 cut(s) 17, 380, 500, 725
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 212
MalI GATC 1 cut(s) 255
MbiI CCGCTC 1 cut(s) 260
MboI GATC 1 cut(s) 253
MboII GAAGA 4 cut(s) 173, 203, 408, 524
MfeI CAATTG 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 6 cut(s) 147, 537, 567, 582, 647, 657
MlyI GAGTC 2 cut(s) 78, 582
MnlI CCTC 6 cut(s) 235, 245, 321, 323, 677, 683
MseI TTAA 4 cut(s) 186, 287, 650, 680
MslI CAYNNNNRTG 3 cut(s) 210, 452, 458
MspCI CTTAAG 1 cut(s) 679
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 283
MunI CAATTG 1 cut(s) 147
Mva1269I GAATGC 2 cut(s) 435, 566
MwoI GCNNNNNNNGC 1 cut(s) 330
NciI CCSGG 1 cut(s) 283
NcoI CCATGG 2 cut(s) 453, 474
NdeII GATC 1 cut(s) 253
NlaIII CATG 7 cut(s) 209, 328, 418, 457, 473, 478, 597
NlaIV GGNNCC 1 cut(s) 233
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 418
PciI ACATGT 1 cut(s) 414
PctI GAATGC 2 cut(s) 435, 566
PfeI GAWTC 1 cut(s) 665
PflMI CCANNNNNTGG 2 cut(s) 320, 475
PkrI GCNGC 1 cut(s) 498
PleI GAGTC 2 cut(s) 78, 582
PpsI GAGTC 2 cut(s) 78, 582
PscI ACATGT 1 cut(s) 414
PspN4I GGNNCC 1 cut(s) 233
RseI CAYNNNNRTG 3 cut(s) 210, 452, 458
SaqAI TTAA 4 cut(s) 186, 287, 650, 680
SatI GCNGC 1 cut(s) 497
Sau3AI GATC 1 cut(s) 253
SchI GAGTC 2 cut(s) 78, 582
ScrFI CCNGG 1 cut(s) 283
SduI GDGCHC 1 cut(s) 51
SetI ASST 6 cut(s) 105, 205, 233, 406, 554, 688
SfaNI GCATC 5 cut(s) 40, 450, 505, 567, 622
SfcI CTRYAG 1 cut(s) 405
SmiMI CAYNNNNRTG 3 cut(s) 210, 452, 458
SmlI CTYRAG 1 cut(s) 679
SmoI CTYRAG 1 cut(s) 679
Sse9I AATT 6 cut(s) 147, 537, 567, 582, 647, 657
SsiI CCGC 1 cut(s) 258
SspI AATATT 1 cut(s) 91
SspMI CTAG 4 cut(s) 17, 380, 500, 725
StyD4I CCNGG 1 cut(s) 281
StyI CCWWGG 3 cut(s) 346, 453, 474
TaaI ACNGT 2 cut(s) 134, 612
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 99, 504
TasI AATT 6 cut(s) 147, 537, 567, 582, 647, 657
TfiI GAWTC 1 cut(s) 665
Tru1I TTAA 4 cut(s) 186, 287, 650, 680
Tru9I TTAA 4 cut(s) 186, 287, 650, 680
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 496
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 3 cut(s) 143, 436, 657
TspGWI ACGGA 1 cut(s) 706
Van91I CCANNNNNTGG 2 cut(s) 320, 475
Vha464I CTTAAG 1 cut(s) 679
XagI CCTNNNNNAGG 1 cut(s) 239
XceI RCATGY 1 cut(s) 418
XspI CTAG 4 cut(s) 17, 380, 500, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.