RchiOBHm_Chr3g0463401

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000262
Physical Location & Seq
Reverse (-)
10765727 .. 10767529
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42972

Sequence Viewer

Length: 648 bp
ATGGTAGCCCATGTTGGTGCCTTTTCATCATCCCTTGACATTCCTAGTTCCATTGCTGCGGAGGTTATGGTAGTGATCAAGGCAATCAAGCTTGCATGGGTTCGAGATTGGAAGCATATTTGGCTGGAAGTTGACTCGTCCCTCATTCTAAATTTTCTCCACTCTCCCCAGATGGTGGCTGATGCATTGGCCAATTTTGGCGCTTCTGTATGGCATGGGAGGTCAAATTTCCGTTCTGGGAGATATATATATAGTTATGGAATACTGTTGCTAGAAATGTTCACGGGAAAAAGAACCACTGATGACATGTTCAAAGATCATCTAAGTATTCACCAATTTGCAGCCATGGCTTTACCTGATCTGGTCATGGACATAGCTGACCCTTCATTGCTCCTTGAGACAGATGACAAGGATGATGACAGATCCTGCAATGACATACAAGAATTAACCAGATATCAAGATCACCCCCAAGTCAACGCAAGAAGATTTGAGGAATGCTTGGTTTCAGTGATACAGATTGGACTTTCATGCTCTGCATTGTCACCAAGAGAGCGGGTGCTTATGGGTATCATTGTCAACAAAATGAAGGCCATTAGAGACTCTTTATCTCAATTGAAGATGCAGCAGCAGCACAGAATCCAAAATTAG

Protein Analysis

215

Amino Acids

24.4

Weight (kDa)

6.04

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AccB7I CCANNNNNTGG 1 cut(s) 175
AccBSI CCGCTC 1 cut(s) 553
AciI CCGC 2 cut(s) 59, 553
AclWI GGATC 1 cut(s) 417
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 2 cut(s) 151, 226
AfiI CCNNNNNNNGG 1 cut(s) 175
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 2 cut(s) 313, 616
AluBI AGCT 2 cut(s) 91, 377
AluI AGCT 2 cut(s) 91, 377
Alw26I GTCTC 2 cut(s) 392, 591
AlwI GGATC 1 cut(s) 417
AlwNI CAGNNNCTG 1 cut(s) 426
AoxI GGCC 2 cut(s) 189, 588
ApeKI GCWGC 5 cut(s) 56, 341, 622, 625, 628
ApoI RAATTY 2 cut(s) 151, 226
AspLEI GCGC 1 cut(s) 203
AsuHPI GGTGA 3 cut(s) 323, 455, 534
BalI TGGCCA 1 cut(s) 191
BanI GGYRCC 1 cut(s) 17
BbvI GCAGC 5 cut(s) 43, 353, 634, 637, 640
BccI CCATC 1 cut(s) 166
BclI TGATCA 1 cut(s) 75
BcoDI GTCTC 2 cut(s) 392, 591
BfaI CTAG 2 cut(s) 45, 272
BfoI RGCGCY 1 cut(s) 204
BisI GCNGC 5 cut(s) 57, 342, 623, 626, 629
BlsI GCNGC 5 cut(s) 58, 343, 624, 627, 630
BmiI GGNNCC 1 cut(s) 19
BmsI GCATC 2 cut(s) 172, 609
BpuEI CTTGAG 1 cut(s) 416
BsaJI CCNNGG 1 cut(s) 345
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse3DI GCAATG 3 cut(s) 51, 386, 436
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 2 cut(s) 29, 418
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMI GCAATG 3 cut(s) 51, 386, 436
BseXI GCAGC 5 cut(s) 43, 353, 634, 637, 640
BshFI GGCC 2 cut(s) 191, 590
BshNI GGYRCC 1 cut(s) 17
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 2 cut(s) 392, 591
BsmFI GGGAC 1 cut(s) 124
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 2 cut(s) 191, 590
Bsp143I GATC 5 cut(s) 75, 316, 358, 422, 460
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 2 cut(s) 59, 553
BspANI GGCC 2 cut(s) 191, 590
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 1 cut(s) 417
BspT107I GGYRCC 1 cut(s) 17
BsrBI CCGCTC 1 cut(s) 553
BsrDI GCAATG 3 cut(s) 51, 386, 436
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 5 cut(s) 75, 316, 358, 422, 460
BssT1I CCWWGG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 323
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 2 cut(s) 29, 418
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 5 cut(s) 78, 319, 361, 425, 463
BstMAI GTCTC 2 cut(s) 392, 591
BstMBI GATC 5 cut(s) 75, 316, 358, 422, 460
BstMWI GCNNNNNNNGC 3 cut(s) 121, 347, 628
BstNSI RCATGY 1 cut(s) 310
BstV1I GCAGC 5 cut(s) 43, 353, 634, 637, 640
BstX2I RGATCY 1 cut(s) 422
BstYI RGATCY 1 cut(s) 422
BsuRI GGCC 2 cut(s) 191, 590
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 2 cut(s) 29, 418
BtsIMutI CAGTG 2 cut(s) 297, 513
Cac8I GCNNGC 1 cut(s) 93
CaiI CAGNNNCTG 1 cut(s) 426
CfoI GCGC 1 cut(s) 203
CviAII CATG 7 cut(s) 11, 96, 215, 307, 346, 367, 528
CviJI RGCY 9 cut(s) 8, 91, 124, 179, 191, 344, 350, 377, 590
CviKI_1 RGCY 9 cut(s) 8, 91, 124, 179, 191, 344, 350, 377, 590
DdeI CTNAG 1 cut(s) 323
DpnI GATC 5 cut(s) 77, 318, 360, 424, 462
DpnII GATC 5 cut(s) 75, 316, 358, 422, 460
EaeI YGGCCR 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 345
Eco32I GATATC 1 cut(s) 455
EcoRV GATATC 1 cut(s) 455
EcoT14I CCWWGG 1 cut(s) 345
EcoT22I ATGCAT 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 7 cut(s) 14, 99, 218, 310, 349, 370, 531
FaqI GGGAC 1 cut(s) 124
FatI CATG 7 cut(s) 10, 95, 214, 306, 345, 366, 527
FauI CCCGC 1 cut(s) 546
FbaI TGATCA 1 cut(s) 75
Fnu4HI GCNGC 5 cut(s) 57, 342, 623, 626, 629
FokI GGATG 2 cut(s) 16, 425
Fsp4HI GCNGC 5 cut(s) 57, 342, 623, 626, 629
FspBI CTAG 2 cut(s) 45, 272
GlaI GCGC 1 cut(s) 202
GluI GCNGC 5 cut(s) 57, 342, 623, 626, 629
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 2 cut(s) 191, 590
HhaI GCGC 1 cut(s) 203
Hin1II CATG 7 cut(s) 14, 99, 218, 310, 349, 370, 531
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 3 cut(s) 133, 475, 577
HindII GTYRAC 3 cut(s) 133, 475, 577
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 3 cut(s) 134, 599, 636
HphI GGTGA 3 cut(s) 323, 455, 534
Hpy166II GTNNAC 4 cut(s) 133, 282, 475, 577
Hpy188III TCNNGA 2 cut(s) 104, 458
Hpy8I GTNNAC 4 cut(s) 133, 282, 475, 577
HpyAV CCTTC 2 cut(s) 393, 580
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4V TGCA 6 cut(s) 95, 185, 341, 429, 536, 622
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 347, 628
HpyF3I CTNAG 1 cut(s) 323
Hsp92II CATG 7 cut(s) 14, 99, 218, 310, 349, 370, 531
HspAI GCGC 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 75
Kzo9I GATC 5 cut(s) 75, 316, 358, 422, 460
LmnI GCTCC 1 cut(s) 396
LpnPI CCDG 7 cut(s) 110, 182, 222, 347, 369, 439, 463
Lsp1109I GCAGC 5 cut(s) 43, 353, 634, 637, 640
LweI GCATC 2 cut(s) 172, 609
MaeI CTAG 2 cut(s) 45, 272
MaeIII GTNAC 1 cut(s) 540
MalI GATC 5 cut(s) 77, 318, 360, 424, 462
MbiI CCGCTC 1 cut(s) 553
MboI GATC 5 cut(s) 75, 316, 358, 422, 460
MboII GAAGA 2 cut(s) 495, 628
MfeI CAATTG 1 cut(s) 611
MflI RGATCY 1 cut(s) 422
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 7 cut(s) 151, 193, 226, 335, 443, 611, 643
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 2 cut(s) 128, 593
MnlI CCTC 4 cut(s) 55, 152, 213, 484
Mox20I TGGCCA 1 cut(s) 191
Mph1103I ATGCAT 1 cut(s) 187
MscI TGGCCA 1 cut(s) 191
MseI TTAA 1 cut(s) 446
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 191
MunI CAATTG 1 cut(s) 611
Mva1269I GAATGC 1 cut(s) 500
MwoI GCNNNNNNNGC 3 cut(s) 121, 347, 628
NcoI CCATGG 1 cut(s) 345
NdeII GATC 5 cut(s) 75, 316, 358, 422, 460
NlaIII CATG 7 cut(s) 14, 99, 218, 310, 349, 370, 531
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 540
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 1 cut(s) 310
PciI ACATGT 1 cut(s) 306
PctI GAATGC 1 cut(s) 500
PfeI GAWTC 1 cut(s) 636
PflMI CCANNNNNTGG 1 cut(s) 175
PkrI GCNGC 5 cut(s) 58, 343, 624, 627, 630
PleI GAGTC 2 cut(s) 128, 593
PpsI GAGTC 2 cut(s) 128, 593
PscI ACATGT 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 19
PstNI CAGNNNCTG 1 cut(s) 426
PsuI RGATCY 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 5 cut(s) 57, 342, 623, 626, 629
Sau3AI GATC 5 cut(s) 75, 316, 358, 422, 460
SchI GAGTC 2 cut(s) 128, 593
SetI ASST 5 cut(s) 66, 93, 224, 358, 379
SfaNI GCATC 2 cut(s) 172, 609
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 7 cut(s) 151, 193, 226, 335, 443, 611, 643
SsiI CCGC 2 cut(s) 59, 553
SspMI CTAG 2 cut(s) 45, 272
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 267
TaqI TCGA 1 cut(s) 103
TasI AATT 7 cut(s) 151, 193, 226, 335, 443, 611, 643
TfiI GAWTC 1 cut(s) 636
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TscAI CASTG 2 cut(s) 304, 513
TseFI GTSAC 1 cut(s) 540
TseI GCWGC 5 cut(s) 56, 341, 622, 625, 628
Tsp45I GTSAC 1 cut(s) 540
TspDTI ATGAA 4 cut(s) 15, 375, 516, 599
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 2 cut(s) 304, 513
Van91I CCANNNNNTGG 1 cut(s) 175
XapI RAATTY 2 cut(s) 151, 226
XceI RCATGY 1 cut(s) 310
XspI CTAG 2 cut(s) 45, 272
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.