Rorug03G0064800

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
4790073 .. 4794623
4551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0064800.1

Sequence Viewer

Length: 324 bp
ATGGTGGCTATTGTGAGGGATATGGTTTGTTGTGGAATTTGCGATTTCAGTAATTGGTTGGAAGAGCTTGGAGGTTCTATGCAAAGGAGAGTTTCAATTGTTTTTCTGCCATTGTTTCTGTATCTGTTATTTGCTATTGGATTCGTGTCCTATTGTTATTCAGACTATCAACTCAGCCACGATCGAGAGATAAAGAGATTGGGTGTGTTTCCCGCGGTTCTGGAAAAGAAAGGACAAGAGGAGAAATTTAATCCCAAGGATCTCCATGAGAACCTATTTGAAGAGCTGAGCAATTACAGACACATCAAGACCTTGAAAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

107

Amino Acids

12.55

Weight (kDa)

6.28

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 215
AciI CCGC 2 cut(s) 213, 215
AclWI GGATC 1 cut(s) 267
AcsI RAATTY 2 cut(s) 36, 245
AgsI TTSAA 3 cut(s) 96, 281, 316
AluBI AGCT 2 cut(s) 67, 286
AluI AGCT 2 cut(s) 67, 286
AlwI GGATC 1 cut(s) 267
ApoI RAATTY 2 cut(s) 36, 245
BlpI GCTNAGC 1 cut(s) 287
Bpu1102I GCTNAGC 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 213, 255
BseDI CCNNGG 2 cut(s) 213, 255
BseMII CTCAG 2 cut(s) 187, 278
BseRI GAGGAG 1 cut(s) 254
Bsh1236I CGCG 1 cut(s) 215
Bsh1285I CGRYCG 1 cut(s) 184
BsiEI CGRYCG 1 cut(s) 184
Bsp143I GATC 2 cut(s) 181, 259
Bsp1720I GCTNAGC 1 cut(s) 287
BspACI CCGC 2 cut(s) 213, 215
BspCNI CTCAG 2 cut(s) 186, 279
BspFNI CGCG 1 cut(s) 215
BspPI GGATC 1 cut(s) 267
BspQI GCTCTTC 2 cut(s) 57, 276
BssECI CCNNGG 2 cut(s) 213, 255
BssMI GATC 2 cut(s) 181, 259
BssT1I CCWWGG 1 cut(s) 255
Bst6I CTCTTC 2 cut(s) 57, 276
BstDEI CTNAG 2 cut(s) 173, 287
BstDSI CCRYGG 1 cut(s) 213
BstFNI CGCG 1 cut(s) 215
BstKTI GATC 2 cut(s) 184, 262
BstMBI GATC 2 cut(s) 181, 259
BstMCI CGRYCG 1 cut(s) 184
BstUI CGCG 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BtgI CCRYGG 1 cut(s) 213
Cfr42I CCGCGG 1 cut(s) 216
CviAII CATG 1 cut(s) 266
CviJI RGCY 4 cut(s) 8, 67, 177, 286
CviKI_1 RGCY 4 cut(s) 8, 67, 177, 286
DdeI CTNAG 2 cut(s) 173, 287
DpnI GATC 2 cut(s) 183, 261
DpnII GATC 2 cut(s) 181, 259
Eam1104I CTCTTC 2 cut(s) 57, 276
EarI CTCTTC 2 cut(s) 57, 276
Eco130I CCWWGG 1 cut(s) 255
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 1 cut(s) 269
FaiI YATR 3 cut(s) 23, 80, 267
FatI CATG 1 cut(s) 265
FauI CCCGC 1 cut(s) 220
Hin1II CATG 1 cut(s) 269
HinfI GANTC 1 cut(s) 141
Hpy188I TCNGA 2 cut(s) 163, 323
Hpy188III TCNNGA 3 cut(s) 185, 221, 307
HpyCH4V TGCA 1 cut(s) 82
HpyF3I CTNAG 2 cut(s) 173, 287
Hsp92II CATG 1 cut(s) 269
KspI CCGCGG 1 cut(s) 216
Kzo9I GATC 2 cut(s) 181, 259
LguI GCTCTTC 2 cut(s) 57, 276
LpnPI CCDG 1 cut(s) 206
MalI GATC 2 cut(s) 183, 261
MboI GATC 2 cut(s) 181, 259
MboII GAAGA 2 cut(s) 74, 293
MfeI CAATTG 1 cut(s) 96
MflI RGATCY 1 cut(s) 259
MluCI AATT 5 cut(s) 36, 52, 96, 245, 292
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 3 cut(s) 9, 65, 232
MseI TTAA 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 215
MunI CAATTG 1 cut(s) 96
MvnI CGCG 1 cut(s) 215
NdeII GATC 2 cut(s) 181, 259
NlaIII CATG 1 cut(s) 269
PciSI GCTCTTC 2 cut(s) 57, 276
PfeI GAWTC 1 cut(s) 141
Ple19I CGATCG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 259
PvuI CGATCG 1 cut(s) 184
SacII CCGCGG 1 cut(s) 216
SapI GCTCTTC 2 cut(s) 57, 276
SaqAI TTAA 1 cut(s) 249
Sau3AI GATC 2 cut(s) 181, 259
SetI ASST 5 cut(s) 69, 76, 276, 288, 314
Sfr303I CCGCGG 1 cut(s) 216
SgrBI CCGCGG 1 cut(s) 216
Sse9I AATT 5 cut(s) 36, 52, 96, 245, 292
SsiI CCGC 2 cut(s) 213, 215
StyI CCWWGG 1 cut(s) 255
TaqI TCGA 1 cut(s) 184
TasI AATT 5 cut(s) 36, 52, 96, 245, 292
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
XapI RAATTY 2 cut(s) 36, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.