pycom12g16100

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
18525728 .. 18527252
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g16100.1

Sequence Viewer

Length: 1281 bp
ATGTATCAAACAACAAGTTATCAGCGCTTGTACTTGGACGACAACAAATTTAAAGGAACAATTCCTCAGTCTTTGAAAGATTTAAAGGGCTTGGAAGAACTTGACATTTCAAGCAATAATTTATCGGGGCAGATTCTTAAATTCATAGGCAAGCTTGGAGCTCTTAAGTATCTTGATCTTTCGTATAATGATTTTGATGGCGAGTTGCCTAAAGAAGGAATTTTTTCAAATTTCAGTGCTATCTCAGTTCTTGGAAATCATAGGCTCTGTGGTGGCATCCCACAATTACATCTACCTGCATGCCCTGAAAACAAACACCATTCATCTCGTGGACTACTTTCCCCAAAAGTAGTCATCCCTATATCTTGTGCACTTGCATTCATAATTGCTCTATCATGCTTCTTTGGTGCTCGTTCAATGTTGAAAAAGTCAAGAGAAGGACTTGTAAATTCACGTTCTTATAAGGATTGGAAATTAGGTGTTTCCTACTCACAACTTGTTGAATCGACTAATGGTTTCTCGGTGGATAATTTGATTGGTTCGGGAAGTTTTGGTTCTGTTTATAAAGGGGTAATTCCTAGTGATGGAACGGTAGTTGCTGTTAAGGTATTAAACCTTCAACAACAAGGAGCGTCCAAGAGTTTCAATGATGAATGCAAAGCTTTAAGAAGTGTCAGGCACAGAAATCTTCTCAAGATCATAACTGCATGCTCGAGCATTGATAATCATGGTAGAGACTTCAAAAGTCTAGTCTTCGAGTTCATGCCAAATGGAAGTCTTGACTCGTGGTTGCATCCTAGAGATGAGGAGCAATCTCCAAGTAAGAGATTGAATTTTATGCAAAGATTGAACATAGCCATTGATGTTGCTTCTGCGTTAGATTACCTCCACAACCATTGTGAAACGTCCATTGTTCATTGTGATCTAAAGCCGAGCAATGTACTTCTTGATGAAGACATGGTAGCCCGTGTTGGGGACTTTGGTTTAGCAAGGTTCCTCTTGGAAGCATCAAATGATCCTTCCCTCAGTCAAACAATGTCATCGCAACTAAAGGGTTCTATAGGTTACATTCCTCCAGAGTACGGCATGGGAGGCCAAGTTTCCATACATGGAGATGTTTACAGCTACGGGATACTTTTGCTAGAAATGTTCACAGGAAAAACACCTACTGATGACATGTTCATCGAAGGTCTAAGCATTTACAAATTCGCAGCCATGGCTTTGCCCGACCATGTCATGGACGTTGTTGACCCTTCATTCTTCCATCGATCTCGAAGCTGA

Protein Analysis

427

Amino Acids

47.06

Weight (kDa)

6.5

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 8 - 65 1.2e-08 Leucine rich repeat
Pkinase PF00069 174 - 391 9.6e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 175 - 393 1.7e-41 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 462, 564
Acc36I ACCTGC 1 cut(s) 304
AccB7I CCANNNNNTGG 1 cut(s) 1237
AclWI GGATC 1 cut(s) 1010
AcsI RAATTY 7 cut(s) 47, 140, 219, 229, 448, 832, 1205
AfaI GTAC 3 cut(s) 32, 942, 1082
AfeI AGCGCT 1 cut(s) 26
AfiI CCNNNNNNNGG 6 cut(s) 215, 584, 972, 973, 1082, 1237
AflII CTTAAG 1 cut(s) 164
AflIII ACRYGT 1 cut(s) 1176
AluBI AGCT 5 cut(s) 154, 161, 662, 1125, 1278
AluI AGCT 5 cut(s) 154, 161, 662, 1125, 1278
Alw21I GWGCWC 3 cut(s) 163, 373, 412
Alw26I GTCTC 1 cut(s) 729
Alw44I GTGCAC 1 cut(s) 369
AlwI GGATC 1 cut(s) 1010
Ama87I CYCGRG 1 cut(s) 712
Aor51HI AGCGCT 1 cut(s) 26
AoxI GGCC 1 cut(s) 1093
ApaLI GTGCAC 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 1211
ApoI RAATTY 7 cut(s) 47, 140, 219, 229, 448, 832, 1205
ArsI GACNNNNNNTTYG 2 cut(s) 735, 767
Asp700I GAANNNNTTC 1 cut(s) 223
AspLEI GCGC 1 cut(s) 27
AvaI CYCGRG 1 cut(s) 712
BaeGI GKGCMC 1 cut(s) 373
BanII GRGCYC 1 cut(s) 163
BarI GAAGNNNNNNTAC 2 cut(s) 600, 632
BauI CACGAG 2 cut(s) 327, 784
BbsI GAAGAC 2 cut(s) 745, 960
Bbv12I GWGCWC 3 cut(s) 163, 373, 412
BbvI GCAGC 1 cut(s) 1223
BccI CCATC 3 cut(s) 191, 578, 1272
BceAI ACGGC 1 cut(s) 1099
BciVI GTATCC 1 cut(s) 1125
BcoDI GTCTC 1 cut(s) 729
BfaI CTAG 4 cut(s) 579, 749, 798, 1142
BfmI CTRYAG 1 cut(s) 1059
BfoI RGCGCY 1 cut(s) 28
BfrI CTTAAG 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 304
BfuI GTATCC 1 cut(s) 1125
BisI GCNGC 1 cut(s) 1212
BlsI GCNGC 1 cut(s) 1213
BmeT110I CYCGRG 1 cut(s) 712
BmiI GGNNCC 1 cut(s) 995
BmsI GCATC 3 cut(s) 285, 802, 1016
BpiI GAAGAC 2 cut(s) 745, 960
BpmI CTGGAG 1 cut(s) 1059
BpuEI CTTGAG 1 cut(s) 677
Bsa29I ATCGAT 1 cut(s) 1267
BsaJI CCNNGG 1 cut(s) 1215
BsaXI ACNNNNNCTCC 2 cut(s) 1083, 1113
Bsc4I CCNNNNNNNGG 6 cut(s) 215, 584, 972, 973, 1082, 1237
Bse3DI GCAATG 1 cut(s) 943
BseCI ATCGAT 1 cut(s) 1267
BseDI CCNNGG 1 cut(s) 1215
BseGI GGATG 3 cut(s) 276, 354, 793
BseLI CCNNNNNNNGG 6 cut(s) 215, 584, 972, 973, 1082, 1237
BseMI GCAATG 1 cut(s) 943
BseMII CTCAG 3 cut(s) 80, 258, 1039
BseRI GAGGAG 1 cut(s) 821
BseSI GKGCMC 1 cut(s) 373
BseXI GCAGC 1 cut(s) 1223
BshFI GGCC 1 cut(s) 1095
BshVI ATCGAT 1 cut(s) 1267
BsiHKAI GWGCWC 3 cut(s) 163, 373, 412
BsiHKCI CYCGRG 1 cut(s) 712
BslFI GGGAC 1 cut(s) 989
BslI CCNNNNNNNGG 6 cut(s) 215, 584, 972, 973, 1082, 1237
BsmAI GTCTC 1 cut(s) 729
BsmFI GGGAC 1 cut(s) 989
BsmI GAATGC 2 cut(s) 377, 659
BsnI GGCC 1 cut(s) 1095
BsoBI CYCGRG 1 cut(s) 712
Bsp1286I GDGCHC 3 cut(s) 163, 373, 412
Bsp143I GATC 5 cut(s) 175, 696, 922, 1015, 1268
Bsp19I CCATGG 1 cut(s) 1215
BspANI GGCC 1 cut(s) 1095
BspCNI CTCAG 3 cut(s) 79, 257, 1038
BspDI ATCGAT 1 cut(s) 1267
BspLI GGNNCC 1 cut(s) 995
BspMI ACCTGC 1 cut(s) 304
BspPI GGATC 1 cut(s) 1010
BspTI CTTAAG 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 943
BssECI CCNNGG 1 cut(s) 1215
BssMI GATC 5 cut(s) 175, 696, 922, 1015, 1268
BssSI CACGAG 2 cut(s) 327, 784
BssT1I CCWWGG 1 cut(s) 1215
Bst2BI CACGAG 2 cut(s) 327, 784
Bst4CI ACNGT 1 cut(s) 592
BstAFI CTTAAG 1 cut(s) 164
BstC8I GCNNGC 3 cut(s) 152, 301, 709
BstDEI CTNAG 4 cut(s) 66, 244, 1025, 1193
BstDSI CCRYGG 1 cut(s) 1215
BstENI CCTNNNNNAGG 1 cut(s) 213
BstF5I GGATG 3 cut(s) 276, 354, 793
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 5 cut(s) 178, 699, 925, 1018, 1271
BstMAI GTCTC 1 cut(s) 729
BstMBI GATC 5 cut(s) 175, 696, 922, 1015, 1268
BstMWI GCNNNNNNNGC 2 cut(s) 1092, 1217
BstNSI RCATGY 3 cut(s) 303, 711, 1180
BstSFI CTRYAG 1 cut(s) 1059
BstSLI GKGCMC 1 cut(s) 373
BstV1I GCAGC 1 cut(s) 1223
BstV2I GAAGAC 2 cut(s) 745, 960
Bsu15I ATCGAT 1 cut(s) 1267
BsuI GTATCC 1 cut(s) 1125
BsuRI GGCC 1 cut(s) 1095
BsuTUI ATCGAT 1 cut(s) 1267
BtgI CCRYGG 1 cut(s) 1215
BtgZI GCGATG 1 cut(s) 1026
BtsCI GGATG 3 cut(s) 276, 354, 793
BtsIMutI CAGTG 1 cut(s) 241
BveI ACCTGC 1 cut(s) 304
Cac8I GCNNGC 3 cut(s) 152, 301, 709
CfoI GCGC 1 cut(s) 27
ClaI ATCGAT 1 cut(s) 1267
CseI GACGC 1 cut(s) 621
Csp6I GTAC 3 cut(s) 31, 941, 1081
CspCI CAANNNNNGTGG 2 cut(s) 878, 913
CviQI GTAC 3 cut(s) 31, 941, 1081
DdeI CTNAG 4 cut(s) 66, 244, 1025, 1193
DpnI GATC 5 cut(s) 177, 698, 924, 1017, 1270
DpnII GATC 5 cut(s) 175, 696, 922, 1015, 1268
DraI TTTAAA 2 cut(s) 52, 84
Ecl136II GAGCTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 1215
Eco24I GRGCYC 1 cut(s) 163
Eco47III AGCGCT 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 712
EcoICRI GAGCTC 1 cut(s) 161
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 1215
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 1215
FaqI GGGAC 1 cut(s) 989
Fnu4HI GCNGC 1 cut(s) 1212
FokI GGATG 3 cut(s) 263, 341, 780
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 1212
FspBI CTAG 4 cut(s) 579, 749, 798, 1142
GlaI GCGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 1212
GsuI CTGGAG 1 cut(s) 1059
HaeII RGCGCY 1 cut(s) 28
HaeIII GGCC 1 cut(s) 1095
HgaI GACGC 1 cut(s) 621
HhaI GCGC 1 cut(s) 27
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HincII GTYRAC 1 cut(s) 1249
HindII GTYRAC 1 cut(s) 1249
HindIII AAGCTT 2 cut(s) 152, 660
HinfI GANTC 3 cut(s) 133, 503, 782
Hpy166II GTNNAC 5 cut(s) 332, 371, 1120, 1152, 1249
Hpy188III TCNNGA 8 cut(s) 173, 432, 543, 694, 779, 947, 1076, 1272
Hpy8I GTNNAC 5 cut(s) 332, 371, 1120, 1152, 1249
HpyAV CCTTC 6 cut(s) 209, 431, 626, 1029, 1181, 1263
HpyCH4III ACNGT 1 cut(s) 592
HpyCH4IV ACGT 3 cut(s) 454, 905, 1242
HpyCH4V TGCA 7 cut(s) 299, 371, 377, 657, 707, 793, 841
HpyF10VI GCNNNNNNNGC 2 cut(s) 1092, 1217
HpyF3I CTNAG 4 cut(s) 66, 244, 1025, 1193
HpySE526I ACGT 3 cut(s) 454, 905, 1242
HspAI GCGC 1 cut(s) 25
Kzo9I GATC 5 cut(s) 175, 696, 922, 1015, 1268
LmnI GCTCC 3 cut(s) 158, 629, 808
LpnPI CCDG 5 cut(s) 309, 318, 661, 1089, 1140
Lsp1109I GCAGC 1 cut(s) 1223
LweI GCATC 3 cut(s) 285, 802, 1016
MaeI CTAG 4 cut(s) 579, 749, 798, 1142
MaeII ACGT 3 cut(s) 454, 905, 1242
MaeIII GTNAC 1 cut(s) 1064
MalI GATC 5 cut(s) 177, 698, 924, 1017, 1270
MboI GATC 5 cut(s) 175, 696, 922, 1015, 1268
MboII GAAGA 5 cut(s) 107, 680, 745, 965, 1252
MhlI GDGCHC 3 cut(s) 163, 373, 412
MlyI GAGTC 1 cut(s) 776
MnlI CCTC 7 cut(s) 75, 799, 896, 1007, 1034, 1083, 1085
MroXI GAANNNNTTC 1 cut(s) 223
MseI TTAA 7 cut(s) 51, 83, 138, 165, 603, 611, 665
MslI CAYNNNNRTG 1 cut(s) 1113
MspCI CTTAAG 1 cut(s) 164
Mva1269I GAATGC 2 cut(s) 377, 659
MwoI GCNNNNNNNGC 2 cut(s) 1092, 1217
NcoI CCATGG 1 cut(s) 1215
NdeII GATC 5 cut(s) 175, 696, 922, 1015, 1268
NlaIV GGNNCC 1 cut(s) 995
NmeAIII GCCGAG 1 cut(s) 957
NspI RCATGY 3 cut(s) 303, 711, 1180
PaeI GCATGC 2 cut(s) 303, 711
PaeR7I CTCGAG 1 cut(s) 712
PciI ACATGT 1 cut(s) 1176
PctI GAATGC 2 cut(s) 377, 659
PdmI GAANNNNTTC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 133, 503
PflFI GACNNNGTC 1 cut(s) 1232
PflMI CCANNNNNTGG 1 cut(s) 1237
PkrI GCNGC 1 cut(s) 1213
PleI GAGTC 1 cut(s) 776
PpsI GAGTC 1 cut(s) 776
PscI ACATGT 1 cut(s) 1176
PsiI TTATAA 2 cut(s) 462, 564
Psp124BI GAGCTC 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 995
PspXI VCTCGAGB 1 cut(s) 712
PsyI GACNNNGTC 1 cut(s) 1232
RsaI GTAC 3 cut(s) 32, 942, 1082
RsaNI GTAC 3 cut(s) 31, 941, 1081
RseI CAYNNNNRTG 1 cut(s) 1113
SacI GAGCTC 1 cut(s) 163
SaqAI TTAA 7 cut(s) 51, 83, 138, 165, 603, 611, 665
SatI GCNGC 1 cut(s) 1212
Sau3AI GATC 5 cut(s) 175, 696, 922, 1015, 1268
SchI GAGTC 1 cut(s) 776
SduI GDGCHC 3 cut(s) 163, 373, 412
SfaNI GCATC 3 cut(s) 285, 802, 1016
SfcI CTRYAG 1 cut(s) 1059
Sfr274I CTCGAG 1 cut(s) 712
SlaI CTCGAG 1 cut(s) 712
SmiMI CAYNNNNRTG 1 cut(s) 1113
SmlI CTYRAG 3 cut(s) 164, 692, 712
SmoI CTYRAG 3 cut(s) 164, 692, 712
SphI GCATGC 2 cut(s) 303, 711
SspMI CTAG 4 cut(s) 579, 749, 798, 1142
SstI GAGCTC 1 cut(s) 163
StyI CCWWGG 1 cut(s) 1215
TaaI ACNGT 1 cut(s) 592
TaiI ACGT 3 cut(s) 457, 908, 1245
TaqI TCGA 6 cut(s) 506, 713, 756, 1185, 1267, 1273
TatI WGTACW 2 cut(s) 30, 940
TfiI GAWTC 2 cut(s) 133, 503
Tru1I TTAA 7 cut(s) 51, 83, 138, 165, 603, 611, 665
Tru9I TTAA 7 cut(s) 51, 83, 138, 165, 603, 611, 665
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 1211
TspDTI ATGAA 9 cut(s) 133, 312, 370, 666, 751, 905, 966, 1171, 1245
TspRI CASTG 1 cut(s) 241
Tth111I GACNNNGTC 1 cut(s) 1232
Van91I CCANNNNNTGG 1 cut(s) 1237
Vha464I CTTAAG 1 cut(s) 164
VneI GTGCAC 1 cut(s) 369
XagI CCTNNNNNAGG 1 cut(s) 213
XapI RAATTY 7 cut(s) 47, 140, 219, 229, 448, 832, 1205
XceI RCATGY 3 cut(s) 303, 711, 1180
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XhoI CTCGAG 1 cut(s) 712
XmnI GAANNNNTTC 1 cut(s) 223
XspI CTAG 4 cut(s) 579, 749, 798, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.