Rmu_sc0001053.1_g000012

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001053.1
Physical Location & Seq
Forward (+)
49132 .. 49741
610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001053.1_g000012.1.cds

Sequence Viewer

Length: 393 bp
atggtaggtcaagttggtgactttggtttagcaagcttcctcttggaagcatcgaatgttccctccaagattcaaagcatatcagtgggactaaagggttccataggctacattcctccagagtatagcatgggagccaaagtttccatactaggagatatttatagctatgggatactgttgatagaaatgttcacagggagaagacctaccgatgacgtgttcaaaaatggtctaagcattcaccattgtacagctatggctttgcctgaccatgttatggacgtcgttgacccttcgttgcttacagaaagatatgaagagaatgatggttgtggtagaggcagtaatgatgtccaagaaagaccaatgcatgagaaatcaggatcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

130

Amino Acids

14.06

Weight (kDa)

4.89

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 288
AccB7I CCANNNNNTGG 1 cut(s) 280
AclWI GGATC 1 cut(s) 381
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 1 cut(s) 280
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 2 cut(s) 74, 226
AjiI CACGTC 1 cut(s) 220
AluBI AGCT 3 cut(s) 36, 168, 257
AluI AGCT 3 cut(s) 36, 168, 257
AlwI GGATC 1 cut(s) 381
AsuHPI GGTGA 2 cut(s) 29, 236
BamHI GGATCC 1 cut(s) 386
BbsI GAAGAC 1 cut(s) 211
BccI CCATC 1 cut(s) 323
BciVI GTATCC 1 cut(s) 168
BfaI CTAG 1 cut(s) 152
BfuI GTATCC 1 cut(s) 168
BmgBI CACGTC 1 cut(s) 220
BmiI GGNNCC 3 cut(s) 100, 136, 388
BmsI GCATC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 211
BpmI CTGGAG 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 285
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 280
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 102
BsmI GAATGC 1 cut(s) 240
Bsp1407I TGTACA 1 cut(s) 251
Bsp143I GATC 1 cut(s) 386
BspLI GGNNCC 3 cut(s) 100, 136, 388
BspPI GGATC 1 cut(s) 381
BsrGI TGTACA 1 cut(s) 251
BssMI GATC 1 cut(s) 386
BssNI GRCGYC 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 315
BstACI GRCGYC 1 cut(s) 285
BstAUI TGTACA 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 236
BstKTI GATC 1 cut(s) 389
BstMBI GATC 1 cut(s) 386
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BsuI GTATCC 1 cut(s) 168
BtrI CACGTC 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 252
CviAII CATG 3 cut(s) 130, 275, 374
CviJI RGCY 6 cut(s) 36, 108, 137, 168, 257, 263
CviKI_1 RGCY 6 cut(s) 36, 108, 137, 168, 257, 263
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 1 cut(s) 236
DpnI GATC 1 cut(s) 388
DpnII GATC 1 cut(s) 386
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
EcoT22I ATGCAT 1 cut(s) 375
FaeI CATG 3 cut(s) 133, 278, 377
FaqI GGGAC 1 cut(s) 102
FatI CATG 3 cut(s) 129, 274, 373
FspBI CTAG 1 cut(s) 152
GsuI CTGGAG 1 cut(s) 102
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 3 cut(s) 133, 278, 377
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 1 cut(s) 70
HphI GGTGA 2 cut(s) 29, 236
Hpy166II GTNNAC 2 cut(s) 195, 292
Hpy188III TCNNGA 3 cut(s) 119, 384, 390
Hpy8I GTNNAC 2 cut(s) 195, 292
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 1 cut(s) 306
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 2 cut(s) 219, 285
HpyCH4V TGCA 1 cut(s) 373
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 2 cut(s) 219, 285
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 3 cut(s) 133, 278, 377
Kzo9I GATC 1 cut(s) 386
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 4 cut(s) 132, 183, 282, 369
LweI GCATC 1 cut(s) 59
MaeI CTAG 1 cut(s) 152
MaeII ACGT 2 cut(s) 219, 285
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 388
MboI GATC 1 cut(s) 386
MboII GAAGA 2 cut(s) 216, 332
MflI RGATCY 1 cut(s) 386
MnlI CCTC 4 cut(s) 50, 73, 126, 335
Mph1103I ATGCAT 1 cut(s) 375
MslI CAYNNNNRTG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 240
NdeII GATC 1 cut(s) 386
NlaIII CATG 3 cut(s) 133, 278, 377
NlaIV GGNNCC 3 cut(s) 100, 136, 388
NmuCI GTSAC 1 cut(s) 17
NsiI ATGCAT 1 cut(s) 375
PctI GAATGC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 70
PflMI CCANNNNNTGG 1 cut(s) 280
PspN4I GGNNCC 3 cut(s) 100, 136, 388
PsuI RGATCY 1 cut(s) 386
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
RseI CAYNNNNRTG 1 cut(s) 83
Sau3AI GATC 1 cut(s) 386
SetI ASST 7 cut(s) 10, 38, 170, 211, 222, 259, 288
SfaNI GCATC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 83
SspMI CTAG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 2 cut(s) 222, 288
TaqI TCGA 1 cut(s) 53
TatI WGTACW 1 cut(s) 251
TfiI GAWTC 1 cut(s) 70
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 333
TspRI CASTG 1 cut(s) 90
Van91I CCANNNNNTGG 1 cut(s) 280
XspI CTAG 1 cut(s) 152
ZraI GACGTC 1 cut(s) 286
Zsp2I ATGCAT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.