Rh4CG158600

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
34842720 .. 34843371
652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG158600.1

Sequence Viewer

Length: 465 bp
ATGGCATTGAATGGCAGAGTATGGCATGGGAGGTCAAATTTCCGTTCTGGGAGATATATATATAGTTATGGAATACTGTTGCTAGAAATGTTCAGAGGAAAAAGACCGACTGATGACATGTTCAAAGATGATCTAAGTATTCACCAATTTGCAACCATGGCTTTGCCTGATCATGTCATAGACATAGCTGACCCTTCATTGCTCCTTGAGACAGATGACGAGGATGATGACAGATCCAGCAATGACATACAAGAAAGACCATTAACCAGATATCAAGATCACCCCCAAGTCAACGCAAGAAGATTGGAGGAATGCTTGGTTTCAGTGATACAGATTGGACTTTCATGCTCTGCATTGTCACCAAGAGAGCGGGTGCTTATGGGTATCATTGTCCACAAAATGAAGGCCATTAGAGACTCTTTATCTCAATTGAAGATGCAGCAGCAGCACAGAATCCATAATTAG

Protein Analysis

154

Amino Acids

17.86

Weight (kDa)

6.37

Isoelectric Point (pI)

52.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 370
AciI CCGC 1 cut(s) 370
AclWI GGATC 1 cut(s) 228
AcsI RAATTY 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 3 cut(s) 10, 124, 433
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
Alw26I GTCTC 2 cut(s) 203, 408
AlwI GGATC 1 cut(s) 228
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 3 cut(s) 439, 442, 445
ApoI RAATTY 1 cut(s) 37
AsuHPI GGTGA 3 cut(s) 134, 272, 351
BbvI GCAGC 3 cut(s) 451, 454, 457
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 2 cut(s) 203, 408
BfaI CTAG 1 cut(s) 83
BisI GCNGC 3 cut(s) 440, 443, 446
BlsI GCNGC 3 cut(s) 441, 444, 447
BmsI GCATC 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 156
Bse3DI GCAATG 2 cut(s) 197, 247
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 229
BseMI GCAATG 2 cut(s) 197, 247
BseXI GCAGC 3 cut(s) 451, 454, 457
BshFI GGCC 1 cut(s) 407
BsmAI GTCTC 2 cut(s) 203, 408
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 1 cut(s) 407
Bsp143I GATC 4 cut(s) 130, 169, 233, 277
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 1 cut(s) 370
BspANI GGCC 1 cut(s) 407
BspPI GGATC 1 cut(s) 228
BsrBI CCGCTC 1 cut(s) 370
BsrDI GCAATG 2 cut(s) 197, 247
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 4 cut(s) 130, 169, 233, 277
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 134
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 4 cut(s) 133, 172, 236, 280
BstMAI GTCTC 2 cut(s) 203, 408
BstMBI GATC 4 cut(s) 130, 169, 233, 277
BstMWI GCNNNNNNNGC 2 cut(s) 158, 445
BstNSI RCATGY 1 cut(s) 121
BstV1I GCAGC 3 cut(s) 451, 454, 457
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BsuRI GGCC 1 cut(s) 407
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 330
CviAII CATG 5 cut(s) 26, 118, 157, 173, 345
CviJI RGCY 3 cut(s) 161, 188, 407
CviKI_1 RGCY 3 cut(s) 161, 188, 407
DdeI CTNAG 1 cut(s) 134
DpnI GATC 4 cut(s) 132, 171, 235, 279
DpnII GATC 4 cut(s) 130, 169, 233, 277
Eco130I CCWWGG 1 cut(s) 156
Eco32I GATATC 1 cut(s) 272
EcoRV GATATC 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 5 cut(s) 29, 121, 160, 176, 348
FatI CATG 5 cut(s) 25, 117, 156, 172, 344
FauI CCCGC 1 cut(s) 363
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 3 cut(s) 440, 443, 446
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 3 cut(s) 440, 443, 446
FspBI CTAG 1 cut(s) 83
GluI GCNGC 3 cut(s) 440, 443, 446
HaeIII GGCC 1 cut(s) 407
Hin1II CATG 5 cut(s) 29, 121, 160, 176, 348
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 2 cut(s) 416, 453
HphI GGTGA 3 cut(s) 134, 272, 351
Hpy166II GTNNAC 2 cut(s) 292, 394
Hpy188I TCNGA 1 cut(s) 95
Hpy188III TCNNGA 1 cut(s) 275
Hpy8I GTNNAC 2 cut(s) 292, 394
HpyAV CCTTC 2 cut(s) 204, 397
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4V TGCA 3 cut(s) 152, 353, 439
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 445
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 5 cut(s) 29, 121, 160, 176, 348
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 4 cut(s) 130, 169, 233, 277
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 4 cut(s) 33, 180, 250, 280
Lsp1109I GCAGC 3 cut(s) 451, 454, 457
LweI GCATC 1 cut(s) 426
MaeI CTAG 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 357
MalI GATC 4 cut(s) 132, 171, 235, 279
MbiI CCGCTC 1 cut(s) 370
MboI GATC 4 cut(s) 130, 169, 233, 277
MboII GAAGA 2 cut(s) 312, 445
MfeI CAATTG 1 cut(s) 428
MflI RGATCY 1 cut(s) 233
MluCI AATT 4 cut(s) 37, 146, 428, 460
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 4 cut(s) 24, 89, 214, 301
MseI TTAA 1 cut(s) 263
MunI CAATTG 1 cut(s) 428
Mva1269I GAATGC 1 cut(s) 317
MwoI GCNNNNNNNGC 2 cut(s) 158, 445
NcoI CCATGG 1 cut(s) 156
NdeII GATC 4 cut(s) 130, 169, 233, 277
NlaIII CATG 5 cut(s) 29, 121, 160, 176, 348
NmuCI GTSAC 1 cut(s) 357
NspI RCATGY 1 cut(s) 121
PciI ACATGT 1 cut(s) 117
PctI GAATGC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 453
PkrI GCNGC 3 cut(s) 441, 444, 447
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
PscI ACATGT 1 cut(s) 117
PsuI RGATCY 1 cut(s) 233
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 3 cut(s) 440, 443, 446
Sau3AI GATC 4 cut(s) 130, 169, 233, 277
SchI GAGTC 1 cut(s) 410
SetI ASST 2 cut(s) 35, 190
SfaNI GCATC 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 4 cut(s) 37, 146, 428, 460
SsiI CCGC 1 cut(s) 370
SspMI CTAG 1 cut(s) 83
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 78
TaqII GACCGA 1 cut(s) 121
TasI AATT 4 cut(s) 37, 146, 428, 460
TfiI GAWTC 1 cut(s) 453
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 1 cut(s) 357
TseI GCWGC 3 cut(s) 439, 442, 445
Tsp45I GTSAC 1 cut(s) 357
TspDTI ATGAA 3 cut(s) 186, 333, 416
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 1 cut(s) 330
XapI RAATTY 1 cut(s) 37
XceI RCATGY 1 cut(s) 121
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.