pycom12g15740

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
18186386 .. 18187102
717 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g15740.1

Sequence Viewer

Length: 717 bp
ATGGAGTGGAATAGGTTTGAGGGAAGCTTTACTCCGAGTCTCGGGAACTGCCAAAACTTATTGCTGCTTAACCTTTCTAGTAATCAGCTAAGTGGCACCATACCTAAAGAGGTTATCGGGCTTTCGTCGCTGTCAATTTATCTGTCCATGTCGACCAATTCTTTGACTGGTTCTCTACCATCTGAAGTGGACGAGTCGGTACATCTCTCAGAGCTAGATGTATCAGGAAACAAGTTATCAGGTGAAATCCCCGTAACCCTTGGCAGTTGTGCTTGTTTGGTGAGCCTACATTTAAAAGGTAACCAATTTGAAGGAACGATTCCTCTATCTCTGGCCAACTTAAGAGGCTTGGAAGAAATAGATATTTCACGCAATAATTTATCTGGCCAGATTCCTAAATTTTTAGGTAAGCTTAGAGCTCTAAAGCAACTCAATGTTTCACATAATGAATTTGAGGGTGAATTGCCCAAAGAAGGGTTCTTTTCAAATGCAAGTGGTGTCTCAATTCTTGGTAATGAAAGGCTTTGTGGTGGCATCTCACAATTCCGTCTACCTTCATGCCCCAACATATCTCATGGACTATTTTCCCAAAATGTAGTCTTCCCTATAGCTTGTGCACTTGCATTTATAATTGCTCTATCATGCTCTATTGCTACTTATTCAAAGGTGAAAAGGTCACGAGGTGGACTAGCCACTTCACGTTCCTATAAGAATTGA

Protein Analysis

239

Amino Acids

25.51

Weight (kDa)

7.59

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 9 - 151 1.8e-11 Leucine-rich repeat region
LRR_8 PF13855 93 - 150 1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 629
AccB1I GGYRCC 1 cut(s) 95
AccI GTMKAC 2 cut(s) 152, 550
AcoI YGGCCR 2 cut(s) 333, 385
AcsI RAATTY 2 cut(s) 398, 449
AcuI CTGAAG 1 cut(s) 204
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 3 cut(s) 41, 473, 474
AflII CTTAAG 1 cut(s) 340
AgsI TTSAA 3 cut(s) 311, 486, 663
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AluBI AGCT 6 cut(s) 27, 88, 214, 412, 419, 611
AluI AGCT 6 cut(s) 27, 88, 214, 412, 419, 611
Alw21I GWGCWC 2 cut(s) 421, 619
Alw26I GTCTC 2 cut(s) 44, 505
Alw44I GTGCAC 1 cut(s) 615
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 2 cut(s) 333, 385
ApaLI GTGCAC 1 cut(s) 615
ApeKI GCWGC 1 cut(s) 64
ApoI RAATTY 2 cut(s) 398, 449
ArsI GACNNNNNNTTYG 2 cut(s) 145, 177
AsuHPI GGTGA 4 cut(s) 254, 292, 470, 679
AvaI CYCGRG 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 619
BalI TGGCCA 2 cut(s) 335, 387
BanI GGYRCC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 421
BauI CACGAG 1 cut(s) 678
BbsI GAAGAC 1 cut(s) 592
Bbv12I GWGCWC 2 cut(s) 421, 619
BbvI GCAGC 1 cut(s) 51
BccI CCATC 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 44, 505
BfaI CTAG 3 cut(s) 78, 215, 689
BfmI CTRYAG 1 cut(s) 606
BfrI CTTAAG 1 cut(s) 340
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 97
BmsI GCATC 1 cut(s) 543
BpiI GAAGAC 1 cut(s) 592
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 473, 474
Bse1I ACTGG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 259
BseLI CCNNNNNNNGG 3 cut(s) 41, 473, 474
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 172
BseSI GKGCMC 1 cut(s) 619
BseXI GCAGC 1 cut(s) 51
BshFI GGCC 2 cut(s) 335, 387
BshNI GGYRCC 1 cut(s) 95
BsiHKAI GWGCWC 2 cut(s) 421, 619
BsiHKCI CYCGRG 1 cut(s) 41
BslI CCNNNNNNNGG 3 cut(s) 41, 473, 474
BsmAI GTCTC 2 cut(s) 44, 505
BsnI GGCC 2 cut(s) 335, 387
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 2 cut(s) 421, 619
BspANI GGCC 2 cut(s) 335, 387
BspCNI CTCAG 1 cut(s) 221
BspLI GGNNCC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 95
BspTI CTTAAG 1 cut(s) 340
BsrI ACTGG 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 259
BssSI CACGAG 1 cut(s) 678
BssT1I CCWWGG 1 cut(s) 259
Bst2BI CACGAG 1 cut(s) 678
BstAFI CTTAAG 1 cut(s) 340
BstDEI CTNAG 3 cut(s) 89, 208, 413
BstEII GGTNACC 1 cut(s) 299
BstMAI GTCTC 2 cut(s) 44, 505
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstPI GGTNACC 1 cut(s) 299
BstSFI CTRYAG 1 cut(s) 606
BstSLI GKGCMC 1 cut(s) 619
BstV1I GCAGC 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 592
BsuRI GGCC 2 cut(s) 335, 387
Csp6I GTAC 1 cut(s) 200
CviAII CATG 4 cut(s) 148, 558, 575, 642
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 3 cut(s) 89, 208, 413
DraI TTTAAA 1 cut(s) 294
DraIII CACNNNGTG 1 cut(s) 683
EaeI YGGCCR 2 cut(s) 333, 385
Ecl136II GAGCTC 1 cut(s) 419
Eco130I CCWWGG 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 421
Eco53kI GAGCTC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 41
Eco91I GGTNACC 1 cut(s) 299
EcoICRI GAGCTC 1 cut(s) 419
EcoO65I GGTNACC 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 4 cut(s) 151, 561, 578, 645
FatI CATG 4 cut(s) 147, 557, 574, 641
FblI GTMKAC 2 cut(s) 152, 550
Fnu4HI GCNGC 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 3 cut(s) 78, 215, 689
GluI GCNGC 1 cut(s) 65
HaeIII GGCC 2 cut(s) 335, 387
Hin1II CATG 4 cut(s) 151, 561, 578, 645
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HindIII AAGCTT 2 cut(s) 25, 410
HinfI GANTC 4 cut(s) 37, 194, 319, 391
HphI GGTGA 4 cut(s) 254, 292, 470, 679
Hpy166II GTNNAC 5 cut(s) 153, 190, 551, 617, 686
Hpy188I TCNGA 3 cut(s) 36, 184, 211
Hpy188III TCNNGA 3 cut(s) 43, 225, 678
Hpy8I GTNNAC 5 cut(s) 153, 190, 551, 617, 686
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 3 cut(s) 305, 467, 564
HpyCH4IV ACGT 1 cut(s) 700
HpyCH4V TGCA 3 cut(s) 491, 617, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 3 cut(s) 89, 208, 413
HpySE526I ACGT 1 cut(s) 700
Hsp92II CATG 4 cut(s) 151, 561, 578, 645
LpnPI CCDG 6 cut(s) 153, 210, 225, 317, 369, 401
Lsp1109I GCAGC 1 cut(s) 51
LweI GCATC 1 cut(s) 543
MaeI CTAG 3 cut(s) 78, 215, 689
MaeII ACGT 1 cut(s) 700
MaeIII GTNAC 3 cut(s) 253, 299, 675
MboII GAAGA 2 cut(s) 365, 592
MhlI GDGCHC 2 cut(s) 421, 619
MlsI TGGCCA 2 cut(s) 335, 387
MluNI TGGCCA 2 cut(s) 335, 387
MlyI GAGTC 2 cut(s) 46, 203
MnlI CCTC 6 cut(s) 13, 103, 333, 338, 448, 674
Mox20I TGGCCA 2 cut(s) 335, 387
MscI TGGCCA 2 cut(s) 335, 387
MseI TTAA 3 cut(s) 69, 293, 341
Msp20I TGGCCA 2 cut(s) 335, 387
MspCI CTTAAG 1 cut(s) 340
MwoI GCNNNNNNNGC 1 cut(s) 127
NlaIII CATG 4 cut(s) 151, 561, 578, 645
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 319, 391
PkrI GCNGC 1 cut(s) 66
PleI GAGTC 2 cut(s) 45, 202
PpsI GAGTC 2 cut(s) 45, 202
PsiI TTATAA 1 cut(s) 629
Psp124BI GAGCTC 1 cut(s) 421
PspEI GGTNACC 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 97
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SacI GAGCTC 1 cut(s) 421
SalI GTCGAC 1 cut(s) 151
SaqAI TTAA 3 cut(s) 69, 293, 341
SatI GCNGC 1 cut(s) 65
SchI GAGTC 2 cut(s) 46, 203
SduI GDGCHC 2 cut(s) 421, 619
SfaNI GCATC 1 cut(s) 543
SfcI CTRYAG 1 cut(s) 606
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
SspMI CTAG 3 cut(s) 78, 215, 689
SstI GAGCTC 1 cut(s) 421
StyI CCWWGG 1 cut(s) 259
TaiI ACGT 1 cut(s) 703
TaqI TCGA 1 cut(s) 152
TfiI GAWTC 2 cut(s) 319, 391
Tru1I TTAA 3 cut(s) 69, 293, 341
Tru9I TTAA 3 cut(s) 69, 293, 341
TseFI GTSAC 1 cut(s) 675
TseI GCWGC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 675
TspDTI ATGAA 3 cut(s) 462, 531, 546
TspGWI ACGGA 1 cut(s) 536
Vha464I CTTAAG 1 cut(s) 340
VneI GTGCAC 1 cut(s) 615
XapI RAATTY 2 cut(s) 398, 449
XmiI GTMKAC 2 cut(s) 152, 550
XspI CTAG 3 cut(s) 78, 215, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.