Rh4CG158500

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
34836804 .. 34837103
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG158500.1

Sequence Viewer

Length: 300 bp
ATGGCTTTCCCTGACCGTGTCATGGACATACTTGACACTTCATTGGTCCTGGAAGCAGATGAGGATAATGATGATAGATACAGCAATGACATACAAGAAAGGGCGATAGCCAGGTATAAGGATAAAGGCCGAGTCAAACAAAGAAGATTGGAAGAATGCTTGATTTCAGTGAGGCAGATTGGTCTCTCATGCTCCACAGTATCACCAAGTGAGCGCATTCACATGAATGTGGTTGTGAACAAGATGACTGCAATTAGAGATTCCTATCTCAAATCGACCAAGACCAAGTTTGTCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

99

Amino Acids

11.43

Weight (kDa)

7.76

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 22
AjnI CCWGG 2 cut(s) 48, 110
Alw26I GTCTC 1 cut(s) 188
AoxI GGCC 1 cut(s) 127
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 2 cut(s) 195, 286
AvaII GGWCC 1 cut(s) 46
BciT130I CCWGG 2 cut(s) 50, 112
BcoDI GTCTC 1 cut(s) 188
Bme1390I CCNGG 2 cut(s) 50, 112
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 50, 112
BsaBI GATNNNNATC 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 91
Bse8I GATNNNNATC 1 cut(s) 264
BseBI CCWGG 2 cut(s) 50, 112
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 91
BshFI GGCC 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 188
BsmI GAATGC 2 cut(s) 161, 216
BsnI GGCC 1 cut(s) 129
Bso31I GGTCTC 1 cut(s) 188
BspANI GGCC 1 cut(s) 129
BspTNI GGTCTC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 91
Bst2UI CCWGG 2 cut(s) 50, 112
Bst4CI ACNGT 2 cut(s) 17, 199
BstHHI GCGC 1 cut(s) 216
BstMAI GTCTC 1 cut(s) 188
BstNI CCWGG 2 cut(s) 50, 112
BstSCI CCNGG 2 cut(s) 48, 110
BsuRI GGCC 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 174
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 46
CviAII CATG 3 cut(s) 22, 189, 223
CviJI RGCY 3 cut(s) 5, 110, 129
CviKI_1 RGCY 3 cut(s) 5, 110, 129
DraIII CACNNNGTG 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 46
EcoRII CCWGG 2 cut(s) 48, 110
FaeI CATG 3 cut(s) 25, 192, 226
FaiI YATR 6 cut(s) 23, 29, 92, 117, 190, 224
FatI CATG 3 cut(s) 21, 188, 222
GlaI GCGC 1 cut(s) 215
HaeIII GGCC 1 cut(s) 129
HhaI GCGC 1 cut(s) 216
Hin1II CATG 3 cut(s) 25, 192, 226
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HinfI GANTC 2 cut(s) 132, 260
HphI GGTGA 2 cut(s) 195, 286
Hpy166II GTNNAC 1 cut(s) 238
Hpy8I GTNNAC 1 cut(s) 238
HpyCH4III ACNGT 2 cut(s) 17, 199
HpyCH4V TGCA 1 cut(s) 251
Hsp92II CATG 3 cut(s) 25, 192, 226
HspAI GCGC 1 cut(s) 214
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 5 cut(s) 24, 35, 62, 97, 124
MaeIII GTNAC 1 cut(s) 292
MboII GAAGA 2 cut(s) 156, 164
MluCI AATT 1 cut(s) 252
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 2 cut(s) 55, 165
MslI CAYNNNNRTG 3 cut(s) 221, 225, 227
MspR9I CCNGG 2 cut(s) 50, 112
Mva1269I GAATGC 2 cut(s) 161, 216
MvaI CCWGG 2 cut(s) 50, 112
NlaIII CATG 3 cut(s) 25, 192, 226
NmeAIII GCCGAG 1 cut(s) 155
NmuCI GTSAC 1 cut(s) 292
PctI GAATGC 2 cut(s) 161, 216
PfeI GAWTC 1 cut(s) 260
PflFI GACNNNGTC 1 cut(s) 17
PfoI TCCNGGA 1 cut(s) 48
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Psp6I CCWGG 2 cut(s) 48, 110
PspGI CCWGG 2 cut(s) 48, 110
PspPI GGNCC 1 cut(s) 46
PsyI GACNNNGTC 1 cut(s) 17
RseI CAYNNNNRTG 3 cut(s) 221, 225, 227
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 2 cut(s) 50, 112
SetI ASST 2 cut(s) 116, 299
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 3 cut(s) 221, 225, 227
Sse9I AATT 1 cut(s) 252
StyD4I CCNGG 2 cut(s) 48, 110
TaaI ACNGT 2 cut(s) 17, 199
TaqI TCGA 1 cut(s) 275
TasI AATT 1 cut(s) 252
TfiI GAWTC 1 cut(s) 260
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 2 cut(s) 30, 239
TspRI CASTG 1 cut(s) 174
Tth111I GACNNNGTC 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.