MD04G1159000.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
24688069 .. 24691396
3328 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1159000.v1.1.491

Sequence Viewer

Length: 3132 bp
ATGATGGAGCCTTCACGTACCAACCATAAGATGGTTTTGTTCAAATTCATGCATGGGTTCATTCTTTTATGCTTGAGCACATGCCTCAAATCTGTAGCACTTCGCAGCCTTACTTATCTTGGAAATGAATCTGATCGCTTGACATTGCTAGACTTCAAGAAAAGAATAACAGTAGATCCTTTCGATGTCATGAGCTCGTGGAATCATTCTATCCATTTCTGCAGTTGGGTTGGAGTTTCGTGCCACAGTTCCACCAAAAGAGTCTTGATGCTGAACCTAAAAGCTCAAAAGTTGGTAGGCTCCATTCCACCATCCGTTGGAAATCTTACTTATCTTATTGGAATCAATTTGATAGACAACAACTTTCATGGGGAAATTCCTCAAGAAATGGGTCGTCTACAAAGCCTACAATATCTCAACCTTTCTCATAATTCCTTCCGTGGAAAAATTCCAACTAATTTGTCGCAATGCACACAACTAAGATGGCTTAATCTACAAGTCAATCGAATTAAGGGGTCCATTCCGAACCAACTCAGTTCATTGTTCAATTTAAAATGTTTATGGCTTTATGGTAACAATCTCACTGGAACCATCCCACCGTGGATAGGAAACTTTTCTTTGTTGAGTAGTCTTTTTCTTGGCGACAACAATTTTCATGGAAGCATACCCAATGAGCTGGGGCATATAACAGGCTTGATGGAATTCGTAGTTGAGAGCAATCATCTATCTGGTATGATCCCTTCCACAATCTATAATATTTCTTCCATATACAATTTTAGTGTTGCTGAGAACCAGTTGCATGGAGAGCTACCACGAAATCTCGGCACTATGCTTCCTAATCTTGTACGTCTTTTATGCGGTATGAACAAATTCAGAGGAAATATTCCCATATCGTTGTCCAATGCTTCTAAGCTTTTGAAACTTGATCTTTCTCAAAATGGCTTCACTGGGACAATCCCTGGTGAAAGTTTCGGAAGCTTGCGAAGGTTATTTTGGCTAAACGTTGAAAGCAATCAACTAGGAAATAGAAAAGTTGGCGACTTGAATTTTCTCAGTTTCTTGGCTAATTGCACTAGTTTGGAGGTTTTGGGTCTTGGCGATAATAATTTTGGAGGAGGAATCCCAGGATCCGTAGCCAACTTTTCGACCCAACTAAAAGTTCTTAGTATGGGGGGTAATGTGATATATGGAAGCCTCCCTAACGACATTGGAAATCTTATAAACCTGACCATTCTAACATTAGATCGGAACCATTTGGGCGGCATTGTCCCTCATGAAATTGGGAAACTAGAGAAGTTAGAGCAACTGTATTTGGAAGGAAATAAATTTTCTGGGTTAATCCCGTCTTCCCTTGGTAACATGACTTCATTGTTAAATCTCTACATGGAGTCAAACAGGTTTGAAGGCAGTATACCTCCAAGTCTGGGAAACTACCGAAACATATTATTTCTTAACCTTTCAAGTAACAACCTTACGGGCACCATACCTAAAATGCTAATGGAGCTTTCAACCCTTTCAATTTCTTTAGACCTGTCTAATAATTATTTGACTGGTCCGCTGCCCCTTGAGGTGGGTGATTTAGTGCATCTCACGGAGATAAATGTATTAAGAAACAATTTATCAGGTGAAATCCCGAGCACCATCGGGAGTTGTGCTAGTTTGGAGCGCTTGTATTTGCAAGGTAATAAGTTTGAAGGAACAATTCCTCAATCTCTTAAATATTTAAAAGGTTTGGAAAAACTTGATATTTCAAGCAACAATTTGTCTGGTCAGATTCCTGAATTCATTGGCAAGCTTGGTGCTCTCAGGTATCTCAATCTTTCGTACAATGATTTTGAAGGCGAGTTGCCTAAAGAAGGGATTTTTGCAAATGTTAGTAGAGTCTCTGTTCTTGGAAATCATAGACTCTGTGGTGGCATCCCACAATTACATTTGCCTCCATGCCCCCTAAAAAAACACCATTCATCTCAAGGACTACATTCCCCAAAAGTTGTCATCCCCATATCCTGTGTACTTGGAATCATAATTGCTCTATCATGCTTCTTTGGTGTTTGTTCAATGTTGAAAAAGTCAAGAGATAGACTTGCAACTTCACGTTCTTATAAGGATTGGAAATTGGGTGTCTCCTACTCACAACTCGTTGAATCAACTAATGGTTTCTTGGTGGATAATCTTATTGGTTCAGGAAGTTTCGGTTCTGTTTATAAAGGGGTAATTCCAAGTGATGGAACAATAGTTGCTGTTAAGGTATTCAACCTTCAACAACAGGGAGCTTCCAAGAGTTTCATGGATGAATGCAAAGTTTTAAGGAGTATAAGACACCGTAATCTTCTCAAGATCATAACTGCATGCTCAAGCATTGATAATCAGGGTAAAGACTTCAAAAGTCTAGTTTTCGAGTTCATGGCAAATGGAAGTCTTGACTCAATGTTGTATCCAATGGAAGAGAAGCAATCTCTAAGCAAGAGATTGAGTTTTATGCAAAGATTGAATATTGCCATTGATGTTGCTTCTGCGTTAGATTATCTCCACCACCATTGTGAAATGGCAATTGTTCATTGTGATCTAAAACCGAGCAATGTACTTCTTGATGAAGATATGGTAGCCCATGTTGGGGACTTTGGTTTAGCAAGGTTCCTCTTTGAAACATCAAATGATCCCTCATTCAGTCAAACAATGTCATCTCAACTAAAGGGTTCTATAGGCTACATTCCTCCAGAGTACGGCACAGGAGGCCAAGTTTCTATACTTGGAGATGTTTATAGCTATGGGATACTATTGTTGGAAATGTTCACAGGAAAAAGACCTATCGATGACATGTTCAAAGGCAATCTAAGCATTTACCAATTCGTAGCCATTGCTTTGCCTGACCATGTCATGGACGTTGTTGACCATTCAATTATCCTCGACCTCGAAGCTGATGGTGATGTCAACAATTACATAGTGCGGGAACAAACTCCATCCAAACGTAATAATGGTGGCCCGATGAAAGAAAAGAAATTAAAGGAATGCTTGATTTTAGTGATGCAGATAGGACTCTCTTGCTGTGCAATGTCACCAAGTGAGCGGATGCTGATGGATGTGGTTGTCAGAAAAATGAGCACAATCAGAGACTTGTACCTCAAAGTTTAA

Protein Analysis

1044

Amino Acids

115.24

Weight (kDa)

8.31

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 43 - 81 1.4e-10 Leucine rich repeat N-terminal domain
LRR_8 PF13855 118 - 170 1e-06 Leucine rich repeat
LRR_14 PF23598 152 - 263 6.3e-06 Leucine-rich repeat region
LRR_14 PF23598 353 - 487 3e-09 Leucine-rich repeat region
LRR_8 PF13855 408 - 467 7.5e-08 Leucine rich repeat
LRR_14 PF23598 473 - 612 9.1e-09 Leucine-rich repeat region
LRR_8 PF13855 553 - 612 9.3e-10 Leucine rich repeat
Pkinase PF00069 723 - 938 2.1e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 723 - 941 4e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1220, 2103, 2205
AccB1I GGYRCC 1 cut(s) 1478
AccB7I CCANNNNNTGG 4 cut(s) 31, 317, 2225, 2878
AccBSI CCGCTC 1 cut(s) 3067
AccI GTMKAC 2 cut(s) 397, 1411
AciI CCGC 5 cut(s) 858, 1260, 1556, 2947, 3067
AclI AACGTT 1 cut(s) 1002
AclWI GGATC 5 cut(s) 170, 730, 1122, 1135, 2651
AcsI RAATTY 8 cut(s) 44, 375, 447, 701, 869, 1045, 1325, 1781
AdeI CACNNNGTG 1 cut(s) 3062
AfaI GTAC 7 cut(s) 19, 846, 1826, 2013, 2583, 2723, 3119
AfeI AGCGCT 1 cut(s) 1667
AflIII ACRYGT 1 cut(s) 2817
AhlI ACTAGT 1 cut(s) 1073
AjnI CCWGG 2 cut(s) 958, 1123
AjuI GAANNNNNNNTTGG 4 cut(s) 976, 1008, 1143, 1175
AleI CACNNNNGTG 1 cut(s) 2538
Alw21I GWGCWC 5 cut(s) 80, 197, 1640, 1804, 3104
Alw26I GTCTC 3 cut(s) 1888, 2128, 3105
AlwI GGATC 5 cut(s) 170, 730, 1122, 1135, 2651
Ama87I CYCGRG 1 cut(s) 1633
Aor51HI AGCGCT 1 cut(s) 1667
AoxI GGCC 2 cut(s) 2734, 2980
ApeKI GCWGC 2 cut(s) 105, 1558
ApoI RAATTY 8 cut(s) 44, 375, 447, 701, 869, 1045, 1325, 1781
Asp700I GAANNNNTTC 2 cut(s) 613, 869
AspLEI GCGC 1 cut(s) 1668
AspS9I GGNCC 3 cut(s) 516, 1553, 2981
AsuHPI GGTGA 5 cut(s) 974, 1586, 1637, 2936, 3048
AvaI CYCGRG 1 cut(s) 1633
AvaII GGWCC 2 cut(s) 516, 1553
BaeGI GKGCMC 1 cut(s) 1481
BaeI ACNNNNGTAYC 2 cut(s) 2765, 2798
BamHI GGATCC 1 cut(s) 1127
BanI GGYRCC 1 cut(s) 1478
BanII GRGCYC 1 cut(s) 197
BarI GAAGNNNNNNTAC 8 cut(s) 724, 756, 1348, 1380, 1395, 1427, 2241, 2273
BauI CACGAG 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 1338
Bbv12I GWGCWC 5 cut(s) 80, 197, 1640, 1804, 3104
BbvI GCAGC 2 cut(s) 117, 1545
BceAI ACGGC 1 cut(s) 2740
BciT130I CCWGG 2 cut(s) 960, 1125
BciVI GTATCC 2 cut(s) 2445, 2766
BcoDI GTCTC 3 cut(s) 1888, 2128, 3105
BcuI ACTAGT 1 cut(s) 1073
BfaI CTAG 6 cut(s) 149, 1019, 1074, 1289, 1656, 2390
BfmI CTRYAG 3 cut(s) 93, 220, 2700
BfoI RGCGCY 1 cut(s) 1669
BfuI GTATCC 2 cut(s) 2445, 2766
BisI GCNGC 3 cut(s) 106, 1261, 1559
BlsI GCNGC 3 cut(s) 107, 1262, 1560
Bme1390I CCNGG 2 cut(s) 960, 1125
Bme18I GGWCC 2 cut(s) 516, 1553
BmeT110I CYCGRG 1 cut(s) 1633
BmgT120I GGNCC 3 cut(s) 516, 1553, 2981
BmiI GGNNCC 8 cut(s) 9, 301, 517, 589, 1129, 1250, 1480, 2636
BmrFI CCNGG 2 cut(s) 960, 1125
BmrI ACTGGG 1 cut(s) 957
BmsI GCATC 5 cut(s) 258, 1594, 1926, 3015, 3060
BmuI ACTGGG 1 cut(s) 957
BpiI GAAGAC 1 cut(s) 1338
BpmI CTGGAG 1 cut(s) 2700
BpuEI CTTGAG 6 cut(s) 94, 366, 1586, 1953, 2318, 2338
Bsa29I ATCGAT 1 cut(s) 2811
BsaAI YACGTR 1 cut(s) 17
BsaJI CCNNGG 5 cut(s) 439, 599, 958, 1123, 1351
BsaXI ACNNNNNCTCC 4 cut(s) 1655, 1685, 2724, 2754
Bse1I ACTGG 4 cut(s) 589, 793, 952, 1555
Bse3DI GCAATG 5 cut(s) 143, 473, 2584, 2856, 3057
BseBI CCWGG 2 cut(s) 960, 1125
BseCI ATCGAT 1 cut(s) 2811
BseDI CCNNGG 5 cut(s) 439, 599, 958, 1123, 1351
BseGI GGATG 8 cut(s) 311, 591, 1917, 1995, 2296, 2960, 3075, 3085
BseMI GCAATG 5 cut(s) 143, 473, 2584, 2856, 3057
BseMII CTCAG 4 cut(s) 547, 777, 1066, 1819
BseNI ACTGG 4 cut(s) 589, 793, 952, 1555
BseRI GAGGAG 1 cut(s) 1128
BseSI GKGCMC 1 cut(s) 1481
BseXI GCAGC 2 cut(s) 117, 1545
BseYI CCCAGC 1 cut(s) 676
BshFI GGCC 2 cut(s) 2736, 2982
BshNI GGYRCC 1 cut(s) 1478
BshVI ATCGAT 1 cut(s) 2811
BsiHKAI GWGCWC 5 cut(s) 80, 197, 1640, 1804, 3104
BsiHKCI CYCGRG 1 cut(s) 1633
BslFI GGGAC 3 cut(s) 964, 1253, 2630
BsmAI GTCTC 3 cut(s) 1888, 2128, 3105
BsmFI GGGAC 3 cut(s) 964, 1253, 2630
BsmI GAATGC 2 cut(s) 2300, 3014
BsnI GGCC 2 cut(s) 2736, 2982
BsoBI CYCGRG 1 cut(s) 1633
Bsp1286I GDGCHC 6 cut(s) 80, 197, 1481, 1640, 1804, 3104
Bsp143I GATC 9 cut(s) 133, 175, 735, 925, 1127, 1243, 2337, 2563, 2656
BspACI CCGC 5 cut(s) 858, 1260, 1556, 2947, 3067
BspANI GGCC 2 cut(s) 2736, 2982
BspCNI CTCAG 4 cut(s) 546, 778, 1065, 1818
BspDI ATCGAT 1 cut(s) 2811
BspHI TCATGA 2 cut(s) 189, 1273
BspLI GGNNCC 8 cut(s) 9, 301, 517, 589, 1129, 1250, 1480, 2636
BspMAI CTGCAG 1 cut(s) 224
BspPI GGATC 5 cut(s) 170, 730, 1122, 1135, 2651
BspT107I GGYRCC 1 cut(s) 1478
BsrBI CCGCTC 1 cut(s) 3067
BsrDI GCAATG 5 cut(s) 143, 473, 2584, 2856, 3057
BsrI ACTGG 4 cut(s) 589, 793, 952, 1555
BssECI CCNNGG 5 cut(s) 439, 599, 958, 1123, 1351
BssMI GATC 9 cut(s) 133, 175, 735, 925, 1127, 1243, 2337, 2563, 2656
BssNAI GTATAC 1 cut(s) 1412
BssSI CACGAG 1 cut(s) 196
BssT1I CCWWGG 1 cut(s) 1351
Bst1107I GTATAC 1 cut(s) 1412
Bst2BI CACGAG 1 cut(s) 196
Bst2UI CCWGG 2 cut(s) 960, 1125
Bst4CI ACNGT 5 cut(s) 172, 248, 600, 1308, 2324
Bst6I CTCTTC 1 cut(s) 2439
BstBAI YACGTR 1 cut(s) 17
BstC8I GCNNGC 3 cut(s) 980, 1793, 2350
BstDEI CTNAG 9 cut(s) 479, 533, 786, 909, 1052, 1163, 1805, 2459, 2834
BstDSI CCRYGG 2 cut(s) 439, 599
BstENI CCTNNNNNAGG 1 cut(s) 1854
BstF5I GGATG 8 cut(s) 311, 591, 1917, 1995, 2296, 2960, 3075, 3085
BstH2I RGCGCY 1 cut(s) 1669
BstHHI GCGC 1 cut(s) 1668
BstKTI GATC 9 cut(s) 136, 178, 738, 928, 1130, 1246, 2340, 2566, 2659
BstMAI GTCTC 3 cut(s) 1888, 2128, 3105
BstMBI GATC 9 cut(s) 133, 175, 735, 925, 1127, 1243, 2337, 2563, 2656
BstMWI GCNNNNNNNGC 4 cut(s) 805, 1501, 2733, 2835
BstNI CCWGG 2 cut(s) 960, 1125
BstNSI RCATGY 3 cut(s) 84, 2352, 2821
BstSCI CCNGG 2 cut(s) 958, 1123
BstSFI CTRYAG 3 cut(s) 93, 220, 2700
BstSLI GKGCMC 1 cut(s) 1481
BstV1I GCAGC 2 cut(s) 117, 1545
BstV2I GAAGAC 1 cut(s) 1338
BstX2I RGATCY 2 cut(s) 175, 1127
BstXI CCANNNNNNTGG 2 cut(s) 676, 800
BstYI RGATCY 2 cut(s) 175, 1127
BstZ17I GTATAC 1 cut(s) 1412
Bsu15I ATCGAT 1 cut(s) 2811
BsuI GTATCC 2 cut(s) 2445, 2766
BsuRI GGCC 2 cut(s) 2736, 2982
BsuTUI ATCGAT 1 cut(s) 2811
BtgI CCRYGG 2 cut(s) 439, 599
BtsCI GGATG 8 cut(s) 311, 591, 1917, 1995, 2296, 2960, 3075, 3085
BtsIMutI CAGTG 2 cut(s) 582, 945
Cac8I GCNNGC 3 cut(s) 980, 1793, 2350
CciI TCATGA 2 cut(s) 189, 1273
CfoI GCGC 1 cut(s) 1668
Cfr13I GGNCC 3 cut(s) 516, 1553, 2981
ClaI ATCGAT 1 cut(s) 2811
Csp6I GTAC 7 cut(s) 18, 845, 1825, 2012, 2582, 2722, 3118
CspCI CAANNNNNGTGG 2 cut(s) 2519, 2554
CviQI GTAC 7 cut(s) 18, 845, 1825, 2012, 2582, 2722, 3118
DdeI CTNAG 9 cut(s) 479, 533, 786, 909, 1052, 1163, 1805, 2459, 2834
DpnI GATC 9 cut(s) 135, 177, 737, 927, 1129, 1245, 2339, 2565, 2658
DpnII GATC 9 cut(s) 133, 175, 735, 925, 1127, 1243, 2337, 2563, 2656
DraI TTTAAA 2 cut(s) 552, 1725
DraIII CACNNNGTG 1 cut(s) 3062
Eam1104I CTCTTC 1 cut(s) 2439
EarI CTCTTC 1 cut(s) 2439
Ecl136II GAGCTC 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 1351
Eco24I GRGCYC 1 cut(s) 197
Eco47I GGWCC 2 cut(s) 516, 1553
Eco47III AGCGCT 1 cut(s) 1667
Eco53kI GAGCTC 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 1633
EcoICRI GAGCTC 1 cut(s) 195
EcoNI CCTNNNNNAGG 1 cut(s) 1854
EcoRI GAATTC 2 cut(s) 701, 1781
EcoRII CCWGG 2 cut(s) 958, 1123
EcoT14I CCWWGG 1 cut(s) 1351
EcoT22I ATGCAT 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 1351
FalI AAGNNNNNCTT 2 cut(s) 2996, 3028
FaqI GGGAC 3 cut(s) 964, 1253, 2630
FauI CCCGC 1 cut(s) 2940
FblI GTMKAC 2 cut(s) 397, 1411
Fnu4HI GCNGC 3 cut(s) 106, 1261, 1559
FokI GGATG 8 cut(s) 298, 578, 1904, 1982, 2303, 2947, 3082, 3092
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 3 cut(s) 106, 1261, 1559
FspBI CTAG 6 cut(s) 149, 1019, 1074, 1289, 1656, 2390
GlaI GCGC 1 cut(s) 1667
GluI GCNGC 3 cut(s) 106, 1261, 1559
GsaI CCCAGC 1 cut(s) 680
GsuI CTGGAG 1 cut(s) 2700
HaeII RGCGCY 1 cut(s) 1669
HaeIII GGCC 2 cut(s) 2736, 2982
HhaI GCGC 1 cut(s) 1668
Hin6I GCGC 1 cut(s) 1666
HinP1I GCGC 1 cut(s) 1666
HincII GTYRAC 2 cut(s) 2890, 2932
HindII GTYRAC 2 cut(s) 2890, 2932
HindIII AAGCTT 3 cut(s) 911, 976, 1793
HphI GGTGA 5 cut(s) 974, 1586, 1637, 2936, 3048
Hpy166II GTNNAC 6 cut(s) 398, 1412, 2012, 2793, 2890, 2932
Hpy188I TCNGA 8 cut(s) 133, 525, 875, 974, 1248, 1773, 3092, 3110
Hpy8I GTNNAC 6 cut(s) 398, 1412, 2012, 2793, 2890, 2932
HpyCH4III ACNGT 5 cut(s) 172, 248, 600, 1308, 2324
HpyCH4IV ACGT 6 cut(s) 16, 847, 1002, 2095, 2883, 2968
HpyF10VI GCNNNNNNNGC 4 cut(s) 805, 1501, 2733, 2835
HpyF3I CTNAG 9 cut(s) 479, 533, 786, 909, 1052, 1163, 1805, 2459, 2834
HpySE526I ACGT 6 cut(s) 16, 847, 1002, 2095, 2883, 2968
HspAI GCGC 1 cut(s) 1666
Kzo9I GATC 9 cut(s) 133, 175, 735, 925, 1127, 1243, 2337, 2563, 2656
LmnI GCTCC 5 cut(s) 7, 305, 1501, 1663, 2270
Lsp1109I GCAGC 2 cut(s) 117, 1545
LweI GCATC 5 cut(s) 258, 1594, 1926, 3015, 3060
MaeI CTAG 6 cut(s) 149, 1019, 1074, 1289, 1656, 2390
MaeII ACGT 6 cut(s) 16, 847, 1002, 2095, 2883, 2968
MaeIII GTNAC 4 cut(s) 572, 1355, 1463, 3054
MalI GATC 9 cut(s) 135, 177, 737, 927, 1129, 1245, 2339, 2565, 2658
MbiI CCGCTC 1 cut(s) 3067
MboI GATC 9 cut(s) 133, 175, 735, 925, 1127, 1243, 2337, 2563, 2656
MboII GAAGA 5 cut(s) 753, 1338, 2321, 2456, 2606
MfeI CAATTG 1 cut(s) 2550
MflI RGATCY 2 cut(s) 175, 1127
MhlI GDGCHC 6 cut(s) 80, 197, 1481, 1640, 1804, 3104
MlyI GAGTC 6 cut(s) 270, 1397, 1890, 1899, 2417, 3030
MmeI TCCRAC 4 cut(s) 211, 298, 476, 2763
Mph1103I ATGCAT 1 cut(s) 54
MroXI GAANNNNTTC 2 cut(s) 613, 869
MslI CAYNNNNRTG 1 cut(s) 2538
MspA1I CMGCKG 1 cut(s) 1558
MspR9I CCNGG 2 cut(s) 960, 1125
MunI CAATTG 1 cut(s) 2550
Mva1269I GAATGC 2 cut(s) 2300, 3014
MvaI CCWGG 2 cut(s) 960, 1125
MwoI GCNNNNNNNGC 4 cut(s) 805, 1501, 2733, 2835
NdeII GATC 9 cut(s) 133, 175, 735, 925, 1127, 1243, 2337, 2563, 2656
NlaIV GGNNCC 8 cut(s) 9, 301, 517, 589, 1129, 1250, 1480, 2636
NmeAIII GCCGAG 1 cut(s) 801
NmuCI GTSAC 1 cut(s) 3054
NsiI ATGCAT 1 cut(s) 54
NspI RCATGY 3 cut(s) 84, 2352, 2821
OliI CACNNNNGTG 1 cut(s) 2538
PaeI GCATGC 1 cut(s) 2352
PagI TCATGA 2 cut(s) 189, 1273
PciI ACATGT 1 cut(s) 2817
PctI GAATGC 2 cut(s) 2300, 3014
PdmI GAANNNNTTC 2 cut(s) 613, 869
PfeI GAWTC 7 cut(s) 128, 202, 342, 1119, 1774, 2019, 2144
PflFI GACNNNGTC 1 cut(s) 2873
PflMI CCANNNNNTGG 4 cut(s) 31, 317, 2225, 2878
PkrI GCNGC 3 cut(s) 107, 1262, 1560
PleI GAGTC 6 cut(s) 269, 1396, 1889, 1899, 2417, 3030
PpsI GAGTC 6 cut(s) 269, 1396, 1889, 1899, 2417, 3030
Ppu21I YACGTR 1 cut(s) 17
PscI ACATGT 1 cut(s) 2817
PsiI TTATAA 3 cut(s) 1220, 2103, 2205
Psp124BI GAGCTC 1 cut(s) 197
Psp1406I AACGTT 1 cut(s) 1002
Psp6I CCWGG 2 cut(s) 958, 1123
PspFI CCCAGC 1 cut(s) 676
PspGI CCWGG 2 cut(s) 958, 1123
PspN4I GGNNCC 8 cut(s) 9, 301, 517, 589, 1129, 1250, 1480, 2636
PspPI GGNCC 3 cut(s) 516, 1553, 2981
PstI CTGCAG 1 cut(s) 224
PsuI RGATCY 2 cut(s) 175, 1127
PsyI GACNNNGTC 1 cut(s) 2873
RsaI GTAC 7 cut(s) 19, 846, 1826, 2013, 2583, 2723, 3119
RsaNI GTAC 7 cut(s) 18, 845, 1825, 2012, 2582, 2722, 3118
RseI CAYNNNNRTG 1 cut(s) 2538
SacI GAGCTC 1 cut(s) 197
SatI GCNGC 3 cut(s) 106, 1261, 1559
Sau3AI GATC 9 cut(s) 133, 175, 735, 925, 1127, 1243, 2337, 2563, 2656
Sau96I GGNCC 3 cut(s) 516, 1553, 2981
SchI GAGTC 6 cut(s) 270, 1397, 1890, 1899, 2417, 3030
ScrFI CCNGG 2 cut(s) 960, 1125
SduI GDGCHC 6 cut(s) 80, 197, 1481, 1640, 1804, 3104
SfaNI GCATC 5 cut(s) 258, 1594, 1926, 3015, 3060
SfcI CTRYAG 3 cut(s) 93, 220, 2700
SinI GGWCC 2 cut(s) 516, 1553
SmiMI CAYNNNNRTG 1 cut(s) 2538
SmlI CTYRAG 6 cut(s) 73, 381, 1565, 1968, 2333, 2353
SmoI CTYRAG 6 cut(s) 73, 381, 1565, 1968, 2333, 2353
SpeI ACTAGT 1 cut(s) 1073
SphI GCATGC 1 cut(s) 2352
SsiI CCGC 5 cut(s) 858, 1260, 1556, 2947, 3067
SspI AATATT 4 cut(s) 757, 883, 1721, 2494
SspMI CTAG 6 cut(s) 149, 1019, 1074, 1289, 1656, 2390
SstI GAGCTC 1 cut(s) 197
StyD4I CCNGG 2 cut(s) 958, 1123
StyI CCWWGG 1 cut(s) 1351
TaaI ACNGT 5 cut(s) 172, 248, 600, 1308, 2324
TaiI ACGT 6 cut(s) 19, 850, 1005, 2098, 2886, 2971
TaqI TCGA 7 cut(s) 183, 505, 1145, 2397, 2811, 2907, 2913
TatI WGTACW 2 cut(s) 2011, 2581
TauI GCSGC 1 cut(s) 1263
TfiI GAWTC 7 cut(s) 128, 202, 342, 1119, 1774, 2019, 2144
TscAI CASTG 2 cut(s) 589, 952
TseFI GTSAC 1 cut(s) 3054
TseI GCWGC 2 cut(s) 105, 1558
Tsp45I GTSAC 1 cut(s) 3054
TspGWI ACGGA 4 cut(s) 304, 428, 1120, 1607
TspRI CASTG 2 cut(s) 589, 952
Tth111I GACNNNGTC 1 cut(s) 2873
Van91I CCANNNNNTGG 4 cut(s) 31, 317, 2225, 2878
VpaK11BI GGWCC 2 cut(s) 516, 1553
XagI CCTNNNNNAGG 1 cut(s) 1854
XapI RAATTY 8 cut(s) 44, 375, 447, 701, 869, 1045, 1325, 1781
XceI RCATGY 3 cut(s) 84, 2352, 2821
XcmI CCANNNNNNNNNTGG 2 cut(s) 28, 2284
XmiI GTMKAC 2 cut(s) 397, 1411
XmnI GAANNNNTTC 2 cut(s) 613, 869
XspI CTAG 6 cut(s) 149, 1019, 1074, 1289, 1656, 2390
Zsp2I ATGCAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.