Rroxscaffold_2G00107980

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
32007829 .. 32012418
4590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00107980.1

Sequence Viewer

Length: 3153 bp
ATGATGGAGGATTCACTATCAAATTGTAGGTGGTTTTTGCACAAACTCCTTCCTGTGTTCATCGTTTTATGCATGAACACAGTTCTGGAATCTGCAACACCGCCCACTTTCGGAAATGAATCCGATCTCCTGGCATTACTAGACTTCAAGAGAAGAATCATTAAAGATCCTCGCCATATCATGAGCTCATGGAATAATTCCATCCATTTCTGCAGTTGGGTAGGCGTTACATGCAACCCTTCCAACAATCGAGTCATCATTCTGGACCTGGAGTCTCAAGAACTGGAAGGCTCCATATCTCCTTCCATAGGAAATCTTACTTATCTTACTCAACTCAACCTCACAGACAACAAATTTCGTGGTGGAATTCCTCAAAAATTGGGGCGTCTACTGCACTTGCAACAGCTCAACCTGGCCACCAATTCCTTGCGGGGGAATATTCCAACTAATATATCTCACTGTTCCCAACTAAGAGTGCTCGATCTTGGTGACAATGGACTTACGGGGCCAATTCCAGACCAACTCAGTTCACTGTTTGAGTTGACTCATCTATGGCTTGATACTAACATCCTCACAGGAAGTGTCCCAGCTTGGTTAGGAAACTTTTCTTCATTGTATGCATTTTCTTTTGGTGAGAACAATCTCCAAGGAAGCATACCCAATGAGCTAGGGGGTCTAACAAGTTTGAGAAGATTCGTACTTGCAGATAATAATCTTTCTGGTACAGTTCCTTATTCAATCTACAATATTTCCTCATTATACCGCTTCAATGTCGCTTCCAACCACCTGCATGGAGAGTTGCCACCAAATGTTGGCATAACTCTTCCTAATCTCGAAGTTTTTGTTGGTGGTGTCAACAATTTCACAGGAAATATTCCTGTATCATTGTCAAATGCTTCTAGACTCCGGCTTCTTGATTTTGCTGAAAATGGTCTTACCGGTAAGCTCCCTGCCGAGTATTTTGGAAGCTTGGGAAGTTTAGAGAGAGTAAACTTTGATGACAATTCACTGGGAAGTGGGAAAGCTGGTGACCTTACTTCTCTCAGTTTCCTGGCTAATTGTACCAATCTTAAGGTGTTGAGTTTTAGCCGTAATCATCTTGGAGGAGAATTGCCAGAATCTATAGCCAACCTATCAACCCAGCTGAGGATATTTACAATGGGAGGCAATTTGATATATGGAGCCCTTCCTACTGGCATTGGAAATCTGGTAAACTTGACAAATCTGGGAATGGAACAAAACCAGATATCTGGTAGTCTCCCTGATATGATCGGGAAGCTTAACAAGTTAGAGGGTCTATATCTAAATCTGAACAGATTTTCAGGGCCAATCCCATCCTCCCTCGGTAACTTGACTTCAGTGACAAGGCTCTTCATGGAGGGGAATAGGTTTCAGGGAAGCATACCTCCAAGACTTGGGAACTGCCAAAATCTATTGATACTCAACCTTTCTAGTAACAATCTAAATGGCACCATACCGAGAGAGCTAATGGCGATTAAATCCCTTTCGATTTCTTTGACCATGTCTAACAACTCTTTGACTGGTTCACTTCCATCTGAAGTGGGTGGTTTGGTACATCTCGCAGAGCTAGACATATCAGGAAACAAGTTATCGGGTGAAATCCCCGAGACCCTCGGCAGTTCTATTAGTTTGGGACTCCTGCTTTTAGAAGGTAATGAATTCTATGGACATATTCCTCAGTCTATGGAAAAGCTGAGAGGCTTGGAAGAGTTGGATATTTCACGCAATAACTTATCTGGCAAGCTTCCTGAATTCTTAGGCAAGTTTCGAGCTCTCAAGTATCTCAACCTTTCTCACAATGATTTTGAGGGTGAATTGCCTAAAGAAGGAATCTTCTCAAATGCAACTGGTATCTCTGTGCTTGGAAATGATAAGCTCTGTGGAGGAATTCCAGAATTAGTTCTACCTGTATGTTCCAGCAGAAAGCCTCATTCATTGCGAGCCCTACTTGCCCCAGAAGTGATAATCCCTTTGACTAGTGCAATTGCTTTAATAATTGCTCTTTCCTGCTTGGTTTCTGCCCGTTCAATGTCGAAAAAGTCGATAGATGGACCTTTGACTTCATCTTCTCAAAATGATTCATATCCAAGTATCTCTTACTCGGAAATTGTTGAGTCAACTAACGGGTTTTCTGTGGACAACCTGATTGGTTCGGGAAGTTTTGGTTCTGTATACAAAGGATTACTTAGTAGTAATGGAATGGTGGTTGCTGTTAAGGTATTAAACCTTCAACAACAAGGAGCTTCAAAGAGTTTCATTGATGAATGCAGAGCTCTAAGAAGCATAAGGCACCGCAATCTTCTTAAGATAATAACTGCCTGCTCAAGCATTGATAATCAGGGAAATGACTTCAAAAGTCTTGTTTTCGAGTTCATGGAAAATGGAAGTCTTGACTCTTGGCTGCATCCTAGAGATGATGAGCAATCTCAAAGTAAGAAATTGAGCCTTATCCAAAGGCTTAATATTGCAATTGATGTTGCTTGTGCATTAGATTATCTACATGACGATTGTGAATTATCCATTGTTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTCGATGCGGATATGGTAGCCCATGTTGGTGACTTTGGTTTAGCAAGCTTTCCCTTTGAAGCATCAAATAATCATTCCAAAAGTCAGACCATGTCAGCTAGGCTAAAGGGTTCCATTGGCTACATTCCTCCAGAATATGGCATGGGATGTCAAGTTTCCATTCTGGGAGATATCTATAGCTATGGGATTCTATTGTTAGAAATGTTCACAGGGAAAAGGCCTACAGACGACATGTTCAAAGATGGTCTAAGCATTCACCAGTTCACAGCCATGGCTTTCCCTGACCATGTCATGGACATAGTTGACACTCCATTGCTTCCGGAAACAGATGAGGATAATGACGGTGATGACACATACAGCAATGACATACAAGAAAGGCCGATAGGTGGGTATAAGGATAAAGGCCTAGTCAAAGAAAGCAGATTGGAAGAATGCTTGATTTCAGTGATGCAGATTGGTCTCTCATGCTCTACAGTATCACCAAGTGAGCGCATTCTCATGAATGTGGTTGTGAACAAGATGACTGCAATTAGAGATTCCTATCTCAAATTGACCAAGACCAAGTTTGTCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1050

Amino Acids

114.31

Weight (kDa)

5.4

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 40 - 79 1.7e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 99 - 232 3.2e-10 Leucine-rich repeat region
LRR_14 PF23598 349 - 487 6.1e-09 Leucine-rich repeat region
LRR_14 PF23598 469 - 608 2.8e-08 Leucine-rich repeat region
LRR_8 PF13855 553 - 609 9e-07 Leucine rich repeat
Pkinase PF00069 718 - 940 3.5e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 719 - 939 3.8e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 795
Acc36I ACCTGC 1 cut(s) 795
AccB1I GGYRCC 2 cut(s) 1469, 2310
AccB7I CCANNNNNTGG 4 cut(s) 812, 1415, 2714, 2869
AccI GTMKAC 2 cut(s) 388, 2193
AccIII TCCGGA 1 cut(s) 2896
AciI CCGC 5 cut(s) 101, 430, 763, 2314, 2585
AclWI GGATC 1 cut(s) 161
AcoI YGGCCR 1 cut(s) 414
AcsI RAATTY 5 cut(s) 353, 366, 1679, 1772, 1908
AcuI CTGAAG 2 cut(s) 1341, 1578
AcyI GRCGYC 1 cut(s) 385
AdeI CACNNNGTG 1 cut(s) 3062
AfaI GTAC 4 cut(s) 699, 724, 1063, 1575
AflII CTTAAG 2 cut(s) 1070, 2324
AflIII ACRYGT 1 cut(s) 2808
AgeI ACCGGT 1 cut(s) 938
AgsI TTSAA 9 cut(s) 148, 738, 769, 2049, 2252, 2268, 2374, 2636, 2815
AhdI GACNNNNNGTC 1 cut(s) 271
AhlI ACTAGT 1 cut(s) 1997
AjnI CCWGG 4 cut(s) 129, 267, 411, 1050
AjuI GAANNNNNNNTTGG 2 cut(s) 828, 860
Alw21I GWGCWC 4 cut(s) 188, 480, 1795, 2296
Alw26I GTCTC 4 cut(s) 279, 1262, 1622, 3041
AlwI GGATC 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 1625
Aor13HI TCCGGA 1 cut(s) 2896
AoxI GGCC 6 cut(s) 414, 506, 1325, 2795, 2954, 2980
ApeKI GCWGC 1 cut(s) 2422
ApoI RAATTY 5 cut(s) 353, 366, 1679, 1772, 1908
AsiGI ACCGGT 1 cut(s) 938
Asp700I GAANNNNTTC 2 cut(s) 604, 1920
AspLEI GCGC 1 cut(s) 3069
AspS9I GGNCC 4 cut(s) 265, 506, 1325, 2072
AvaI CYCGRG 1 cut(s) 1625
AvaII GGWCC 2 cut(s) 265, 2072
BalI TGGCCA 1 cut(s) 416
BanI GGYRCC 2 cut(s) 1469, 2310
BanII GRGCYC 5 cut(s) 188, 1186, 1795, 1966, 2296
BarI GAAGNNNNNNTAC 4 cut(s) 1339, 1371, 2232, 2264
Bbv12I GWGCWC 4 cut(s) 188, 480, 1795, 2296
BbvCI CCTCAGC 1 cut(s) 1145
BbvI GCAGC 1 cut(s) 2409
BccI CCATC 5 cut(s) 209, 1342, 1561, 2063, 2813
BceAI ACGGC 1 cut(s) 1074
BciT130I CCWGG 4 cut(s) 131, 269, 413, 1052
BcoDI GTCTC 4 cut(s) 279, 1262, 1622, 3041
BcuI ACTAGT 1 cut(s) 1997
BfaI CTAG 9 cut(s) 140, 668, 900, 1452, 1589, 1998, 2430, 2676, 2984
BfmI CTRYAG 5 cut(s) 211, 1122, 2752, 2799, 3048
BfrI CTTAAG 2 cut(s) 1070, 2324
BfuAI ACCTGC 1 cut(s) 795
BisI GCNGC 1 cut(s) 2423
BlsI GCNGC 1 cut(s) 2424
Bme1390I CCNGG 4 cut(s) 131, 269, 413, 1052
Bme18I GGWCC 2 cut(s) 265, 2072
BmeRI GACNNNNNGTC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 1625
BmgT120I GGNCC 4 cut(s) 265, 506, 1325, 2072
BmiI GGNNCC 6 cut(s) 292, 507, 1183, 1471, 2312, 2689
BmrFI CCNGG 4 cut(s) 131, 269, 413, 1052
BmrI ACTGGG 1 cut(s) 1019
BmsI GCATC 4 cut(s) 2434, 2572, 2648, 3015
BmuI ACTGGG 1 cut(s) 1019
BpmI CTGGAG 2 cut(s) 290, 2691
Bpu10I CCTNAGC 1 cut(s) 1145
BpuEI CTTGAG 3 cut(s) 261, 1781, 2329
BsaBI GATNNNNATC 3 cut(s) 711, 2103, 3117
BsaHI GRCGYC 1 cut(s) 385
BsaI GGTCTC 2 cut(s) 1622, 3041
BsaJI CCNNGG 4 cut(s) 646, 1342, 1633, 2847
BsaWI WCCGGW 2 cut(s) 938, 2896
Bse118I RCCGGY 1 cut(s) 938
Bse1I ACTGG 6 cut(s) 288, 1014, 1198, 1546, 1873, 2836
Bse3DI GCAATG 4 cut(s) 1955, 2575, 2888, 2944
Bse8I GATNNNNATC 3 cut(s) 711, 2103, 3117
BseAI TCCGGA 1 cut(s) 2896
BseBI CCWGG 4 cut(s) 131, 269, 413, 1052
BseDI CCNNGG 4 cut(s) 646, 1342, 1633, 2847
BseGI GGATG 5 cut(s) 201, 567, 1334, 2425, 2729
BseJI GATNNNNATC 3 cut(s) 711, 2103, 3117
BseMI GCAATG 4 cut(s) 1955, 2575, 2888, 2944
BseMII CTCAG 5 cut(s) 538, 1057, 1136, 1706, 1712
BseNI ACTGG 6 cut(s) 288, 1014, 1198, 1546, 1873, 2836
BseRI GAGGAG 1 cut(s) 1119
BseXI GCAGC 1 cut(s) 2409
BseYI CCCAGC 2 cut(s) 586, 1140
BsgI GTGCAG 1 cut(s) 377
BshFI GGCC 6 cut(s) 416, 508, 1327, 2797, 2956, 2982
BshNI GGYRCC 2 cut(s) 1469, 2310
BshTI ACCGGT 1 cut(s) 938
BsiHKAI GWGCWC 4 cut(s) 188, 480, 1795, 2296
BsiHKCI CYCGRG 1 cut(s) 1625
BsiSI CCGG 3 cut(s) 907, 939, 2897
BslFI GGGAC 2 cut(s) 569, 1668
BsmAI GTCTC 4 cut(s) 279, 1262, 1622, 3041
BsmFI GGGAC 2 cut(s) 569, 1668
BsmI GAATGC 4 cut(s) 2291, 2829, 3014, 3069
BsnI GGCC 6 cut(s) 416, 508, 1327, 2797, 2956, 2982
Bso31I GGTCTC 2 cut(s) 1622, 3041
BsoBI CYCGRG 1 cut(s) 1625
Bsp1286I GDGCHC 6 cut(s) 188, 480, 1186, 1795, 1966, 2296
Bsp13I TCCGGA 1 cut(s) 2896
Bsp143I GATC 5 cut(s) 124, 166, 481, 1269, 2554
Bsp19I CCATGG 1 cut(s) 2847
BspACI CCGC 5 cut(s) 101, 430, 763, 2314, 2585
BspANI GGCC 6 cut(s) 416, 508, 1327, 2797, 2956, 2982
BspCNI CTCAG 5 cut(s) 537, 1056, 1137, 1707, 1711
BspEI TCCGGA 1 cut(s) 2896
BspHI TCATGA 2 cut(s) 180, 3075
BspLI GGNNCC 6 cut(s) 292, 507, 1183, 1471, 2312, 2689
BspMAI CTGCAG 1 cut(s) 215
BspMI ACCTGC 1 cut(s) 795
BspPI GGATC 1 cut(s) 161
BspQI GCTCTTC 1 cut(s) 1376
BspT107I GGYRCC 2 cut(s) 1469, 2310
BspTI CTTAAG 2 cut(s) 1070, 2324
BspTNI GGTCTC 2 cut(s) 1622, 3041
BsrDI GCAATG 4 cut(s) 1955, 2575, 2888, 2944
BsrFI RCCGGY 1 cut(s) 938
BsrI ACTGG 6 cut(s) 288, 1014, 1198, 1546, 1873, 2836
BssAI RCCGGY 1 cut(s) 938
BssECI CCNNGG 4 cut(s) 646, 1342, 1633, 2847
BssMI GATC 5 cut(s) 124, 166, 481, 1269, 2554
BssNAI GTATAC 1 cut(s) 2194
BssNI GRCGYC 1 cut(s) 385
BssT1I CCWWGG 2 cut(s) 646, 2847
Bst1107I GTATAC 1 cut(s) 2194
Bst2UI CCWGG 4 cut(s) 131, 269, 413, 1052
Bst4CI ACNGT 6 cut(s) 82, 461, 534, 727, 2921, 3052
Bst6I CTCTTC 3 cut(s) 828, 1376, 1722
BstACI GRCGYC 1 cut(s) 385
BstAFI CTTAAG 2 cut(s) 1070, 2324
BstC8I GCNNGC 4 cut(s) 1763, 1962, 2341, 2623
BstDSI CCRYGG 1 cut(s) 2847
BstEII GGTNACC 1 cut(s) 1028
BstENI CCTNNNNNAGG 2 cut(s) 306, 1845
BstF5I GGATG 5 cut(s) 201, 567, 1334, 2425, 2729
BstHHI GCGC 1 cut(s) 3069
BstKTI GATC 5 cut(s) 127, 169, 484, 1272, 2557
BstMAI GTCTC 4 cut(s) 279, 1262, 1622, 3041
BstMBI GATC 5 cut(s) 124, 166, 481, 1269, 2554
BstMWI GCNNNNNNNGC 3 cut(s) 231, 391, 1970
BstNI CCWGG 4 cut(s) 131, 269, 413, 1052
BstNSI RCATGY 2 cut(s) 234, 2812
BstPI GGTNACC 1 cut(s) 1028
BstSCI CCNGG 4 cut(s) 129, 267, 411, 1050
BstSFI CTRYAG 5 cut(s) 211, 1122, 2752, 2799, 3048
BstV1I GCAGC 1 cut(s) 2409
BstX2I RGATCY 1 cut(s) 166
BstXI CCANNNNNNTGG 2 cut(s) 791, 1250
BstYI RGATCY 1 cut(s) 166
BstZ17I GTATAC 1 cut(s) 2194
BsuRI GGCC 6 cut(s) 416, 508, 1327, 2797, 2956, 2982
BtgI CCRYGG 1 cut(s) 2847
BtsCI GGATG 5 cut(s) 201, 567, 1334, 2425, 2729
BtsIMutI CAGTG 5 cut(s) 457, 530, 1007, 1365, 3027
BveI ACCTGC 1 cut(s) 795
Cac8I GCNNGC 4 cut(s) 1763, 1962, 2341, 2623
CciI TCATGA 2 cut(s) 180, 3075
CfoI GCGC 1 cut(s) 3069
Cfr10I RCCGGY 1 cut(s) 938
Cfr13I GGNCC 4 cut(s) 265, 506, 1325, 2072
CseI GACGC 1 cut(s) 374
Csp6I GTAC 4 cut(s) 698, 723, 1062, 1574
CspAI ACCGGT 1 cut(s) 938
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviQI GTAC 4 cut(s) 698, 723, 1062, 1574
DpnI GATC 5 cut(s) 126, 168, 483, 1271, 2556
DpnII GATC 5 cut(s) 124, 166, 481, 1269, 2554
DraIII CACNNNGTG 1 cut(s) 3062
DriI GACNNNNNGTC 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 414
Eam1104I CTCTTC 3 cut(s) 828, 1376, 1722
Eam1105I GACNNNNNGTC 1 cut(s) 271
EarI CTCTTC 3 cut(s) 828, 1376, 1722
Ecl136II GAGCTC 3 cut(s) 186, 1793, 2294
Eco130I CCWWGG 2 cut(s) 646, 2847
Eco147I AGGCCT 2 cut(s) 2797, 2982
Eco24I GRGCYC 5 cut(s) 188, 1186, 1795, 1966, 2296
Eco31I GGTCTC 2 cut(s) 1622, 3041
Eco32I GATATC 2 cut(s) 1248, 2749
Eco47I GGWCC 2 cut(s) 265, 2072
Eco53kI GAGCTC 3 cut(s) 186, 1793, 2294
Eco57I CTGAAG 2 cut(s) 1341, 1578
Eco88I CYCGRG 1 cut(s) 1625
Eco91I GGTNACC 1 cut(s) 1028
EcoICRI GAGCTC 3 cut(s) 186, 1793, 2294
EcoNI CCTNNNNNAGG 2 cut(s) 306, 1845
EcoO65I GGTNACC 1 cut(s) 1028
EcoRI GAATTC 4 cut(s) 366, 1679, 1772, 1908
EcoRII CCWGG 4 cut(s) 129, 267, 411, 1050
EcoRV GATATC 2 cut(s) 1248, 2749
EcoT14I CCWWGG 2 cut(s) 646, 2847
EcoT22I ATGCAT 2 cut(s) 74, 622
EcoT38I GRGCYC 5 cut(s) 188, 1186, 1795, 1966, 2296
ErhI CCWWGG 2 cut(s) 646, 2847
FalI AAGNNNNNCTT 4 cut(s) 2101, 2133, 2190, 2222
FaqI GGGAC 2 cut(s) 569, 1668
FauI CCCGC 1 cut(s) 423
FblI GTMKAC 2 cut(s) 388, 2193
Fnu4HI GCNGC 1 cut(s) 2423
FokI GGATG 5 cut(s) 188, 554, 1321, 2412, 2736
FriOI GRGCYC 5 cut(s) 188, 1186, 1795, 1966, 2296
Fsp4HI GCNGC 1 cut(s) 2423
FspBI CTAG 9 cut(s) 140, 668, 900, 1452, 1589, 1998, 2430, 2676, 2984
GlaI GCGC 1 cut(s) 3068
GluI GCNGC 1 cut(s) 2423
GsaI CCCAGC 2 cut(s) 590, 1144
GsuI CTGGAG 2 cut(s) 290, 2691
HaeIII GGCC 6 cut(s) 416, 508, 1327, 2797, 2956, 2982
HapII CCGG 3 cut(s) 907, 939, 2897
HgaI GACGC 1 cut(s) 374
HhaI GCGC 1 cut(s) 3069
Hin1I GRCGYC 1 cut(s) 385
Hin6I GCGC 1 cut(s) 3067
HinP1I GCGC 1 cut(s) 3067
HincII GTYRAC 4 cut(s) 543, 856, 2139, 2881
HindII GTYRAC 4 cut(s) 543, 856, 2139, 2881
HindIII AAGCTT 4 cut(s) 967, 1277, 1763, 2623
HpaII CCGG 3 cut(s) 907, 939, 2897
Hpy188I TCNGA 6 cut(s) 113, 124, 1311, 1558, 2125, 2664
HpyAV CCTTC 9 cut(s) 59, 249, 281, 312, 1196, 1664, 1841, 2258, 2585
HpyCH4III ACNGT 6 cut(s) 82, 461, 534, 727, 2921, 3052
HpyF10VI GCNNNNNNNGC 3 cut(s) 231, 391, 1970
Hsp92I GRCGYC 1 cut(s) 385
HspAI GCGC 1 cut(s) 3067
Kpn2I TCCGGA 1 cut(s) 2896
Kzo9I GATC 5 cut(s) 124, 166, 481, 1269, 2554
LguI GCTCTTC 1 cut(s) 1376
LmnI GCTCC 4 cut(s) 296, 951, 1181, 2261
Lsp1109I GCAGC 1 cut(s) 2409
LweI GCATC 4 cut(s) 2434, 2572, 2648, 3015
MaeI CTAG 9 cut(s) 140, 668, 900, 1452, 1589, 1998, 2430, 2676, 2984
MaeIII GTNAC 8 cut(s) 226, 488, 1028, 1346, 1360, 1454, 2606, 3145
MalI GATC 5 cut(s) 126, 168, 483, 1271, 2556
MboI GATC 5 cut(s) 124, 166, 481, 1269, 2554
MfeI CAATTG 2 cut(s) 2004, 2490
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 6 cut(s) 188, 480, 1186, 1795, 1966, 2296
MlsI TGGCCA 1 cut(s) 416
MluNI TGGCCA 1 cut(s) 416
MlyI GAGTC 7 cut(s) 261, 281, 538, 897, 1650, 2144, 2408
MmeI TCCRAC 4 cut(s) 267, 467, 804, 1713
Mox20I TGGCCA 1 cut(s) 416
Mph1103I ATGCAT 2 cut(s) 74, 622
MroI TCCGGA 1 cut(s) 2896
MroXI GAANNNNTTC 2 cut(s) 604, 1920
MscI TGGCCA 1 cut(s) 416
MseI TTAA 9 cut(s) 162, 1071, 1281, 1497, 2012, 2235, 2243, 2325, 2481
MslI CAYNNNNRTG 5 cut(s) 789, 2604, 2846, 3074, 3080
Msp20I TGGCCA 1 cut(s) 416
MspA1I CMGCKG 1 cut(s) 1144
MspCI CTTAAG 2 cut(s) 1070, 2324
MspI CCGG 3 cut(s) 907, 939, 2897
MspR9I CCNGG 4 cut(s) 131, 269, 413, 1052
MunI CAATTG 2 cut(s) 2004, 2490
Mva1269I GAATGC 4 cut(s) 2291, 2829, 3014, 3069
MvaI CCWGG 4 cut(s) 131, 269, 413, 1052
MwoI GCNNNNNNNGC 3 cut(s) 231, 391, 1970
NcoI CCATGG 1 cut(s) 2847
NdeII GATC 5 cut(s) 124, 166, 481, 1269, 2554
NlaIV GGNNCC 6 cut(s) 292, 507, 1183, 1471, 2312, 2689
NmeAIII GCCGAG 2 cut(s) 979, 1614
NmuCI GTSAC 5 cut(s) 488, 1028, 1360, 2606, 3145
NsiI ATGCAT 2 cut(s) 74, 622
NspI RCATGY 2 cut(s) 234, 2812
PagI TCATGA 2 cut(s) 180, 3075
PaqCI CACCTGC 1 cut(s) 795
PceI AGGCCT 2 cut(s) 2797, 2982
PciI ACATGT 1 cut(s) 2808
PciSI GCTCTTC 1 cut(s) 1376
PcsI WCGNNNNNNNCGW 1 cut(s) 2060
PctI GAATGC 4 cut(s) 2291, 2829, 3014, 3069
PdmI GAANNNNTTC 2 cut(s) 604, 1920
PflFI GACNNNGTC 3 cut(s) 1522, 2668, 2864
PflMI CCANNNNNTGG 4 cut(s) 812, 1415, 2714, 2869
PinAI ACCGGT 1 cut(s) 938
PkrI GCNGC 1 cut(s) 2424
PleI GAGTC 7 cut(s) 260, 280, 538, 897, 1650, 2143, 2408
PpsI GAGTC 7 cut(s) 260, 280, 538, 897, 1650, 2143, 2408
PscI ACATGT 1 cut(s) 2808
Psp124BI GAGCTC 3 cut(s) 188, 1795, 2296
Psp6I CCWGG 4 cut(s) 129, 267, 411, 1050
PspEI GGTNACC 1 cut(s) 1028
PspFI CCCAGC 2 cut(s) 586, 1140
PspGI CCWGG 4 cut(s) 129, 267, 411, 1050
PspN4I GGNNCC 6 cut(s) 292, 507, 1183, 1471, 2312, 2689
PspPI GGNCC 4 cut(s) 265, 506, 1325, 2072
PstI CTGCAG 1 cut(s) 215
PsuI RGATCY 1 cut(s) 166
PsyI GACNNNGTC 3 cut(s) 1522, 2668, 2864
PvuII CAGCTG 1 cut(s) 1144
RsaI GTAC 4 cut(s) 699, 724, 1063, 1575
RsaNI GTAC 4 cut(s) 698, 723, 1062, 1574
RseI CAYNNNNRTG 5 cut(s) 789, 2604, 2846, 3074, 3080
SacI GAGCTC 3 cut(s) 188, 1795, 2296
SapI GCTCTTC 1 cut(s) 1376
SaqAI TTAA 9 cut(s) 162, 1071, 1281, 1497, 2012, 2235, 2243, 2325, 2481
SatI GCNGC 1 cut(s) 2423
Sau3AI GATC 5 cut(s) 124, 166, 481, 1269, 2554
Sau96I GGNCC 4 cut(s) 265, 506, 1325, 2072
SchI GAGTC 7 cut(s) 261, 281, 538, 897, 1650, 2144, 2408
ScrFI CCNGG 4 cut(s) 131, 269, 413, 1052
SduI GDGCHC 6 cut(s) 188, 480, 1186, 1795, 1966, 2296
SfaNI GCATC 4 cut(s) 2434, 2572, 2648, 3015
SfcI CTRYAG 5 cut(s) 211, 1122, 2752, 2799, 3048
SinI GGWCC 2 cut(s) 265, 2072
SmiMI CAYNNNNRTG 5 cut(s) 789, 2604, 2846, 3074, 3080
SmlI CTYRAG 5 cut(s) 276, 1070, 1796, 2324, 2344
SmoI CTYRAG 5 cut(s) 276, 1070, 1796, 2324, 2344
SpeI ACTAGT 1 cut(s) 1997
SseBI AGGCCT 2 cut(s) 2797, 2982
SsiI CCGC 5 cut(s) 101, 430, 763, 2314, 2585
SspI AATATT 4 cut(s) 439, 748, 874, 2485
SspMI CTAG 9 cut(s) 140, 668, 900, 1452, 1589, 1998, 2430, 2676, 2984
SstI GAGCTC 3 cut(s) 188, 1795, 2296
StuI AGGCCT 2 cut(s) 2797, 2982
StyD4I CCNGG 4 cut(s) 129, 267, 411, 1050
StyI CCWWGG 2 cut(s) 646, 2847
TaaI ACNGT 6 cut(s) 82, 461, 534, 727, 2921, 3052
TaqI TCGA 9 cut(s) 250, 480, 834, 1508, 1789, 2054, 2063, 2388, 2580
Tru1I TTAA 9 cut(s) 162, 1071, 1281, 1497, 2012, 2235, 2243, 2325, 2481
Tru9I TTAA 9 cut(s) 162, 1071, 1281, 1497, 2012, 2235, 2243, 2325, 2481
TscAI CASTG 5 cut(s) 464, 537, 1014, 1365, 3027
TseFI GTSAC 5 cut(s) 488, 1028, 1360, 2606, 3145
TseI GCWGC 1 cut(s) 2422
Tsp45I GTSAC 5 cut(s) 488, 1028, 1360, 2606, 3145
TspRI CASTG 5 cut(s) 464, 537, 1014, 1365, 3027
Tth111I GACNNNGTC 3 cut(s) 1522, 2668, 2864
Van91I CCANNNNNTGG 4 cut(s) 812, 1415, 2714, 2869
Vha464I CTTAAG 2 cut(s) 1070, 2324
VpaK11BI GGWCC 2 cut(s) 265, 2072
XagI CCTNNNNNAGG 2 cut(s) 306, 1845
XapI RAATTY 5 cut(s) 353, 366, 1679, 1772, 1908
XbaI TCTAGA 1 cut(s) 899
XceI RCATGY 2 cut(s) 234, 2812
XmiI GTMKAC 2 cut(s) 388, 2193
XmnI GAANNNNTTC 2 cut(s) 604, 1920
XspI CTAG 9 cut(s) 140, 668, 900, 1452, 1589, 1998, 2430, 2676, 2984
Zsp2I ATGCAT 2 cut(s) 74, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.