pycom04g10500

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
13222593 .. 13226499
3907 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g10500.2

Sequence Viewer

Length: 1020 bp
ATGAACATTATCTTAATTCCTAAGCATGCAGGCATTAAAAGGAACATTTTAGTGCCGGTCTCCGTATCTCATATTTTATCATCTCAAGATGTTTCATTGATCAAATATATTCCCCCGTACAACCTAGAGGAACCTGACTCCCTTTTTTGGCCCTGGAATTCTAAGGGTGATTTAGCGCAAAGAGTGGGTATCACTGGGTCTTTGGACAAAGAAAGAGGCCCTAAACCCATGGCTTCCTCCTCTCATACTATTGATAGGGAGGTTTGGAAAATTGCGTGGGGAATCAAAGCCACACCGAAGGTATTAAACCTTCAACAGCAAGGAGCATCCAAGAGTTTTATGGATGAATGCAAAGCTTTGAAAATTAATATTGCAATTGATGTTGCTTCTTCATTGGATTATCTCCACAACCATTGTGAAACTTCAATTGTTCATTGTGACATGAAGCCAAATAACGTTCTTCTTGACGAAGATATGGTAGCTCATGTTGGTGACTTTGGTTTAGCAAGGTTCCTCTTGGAGGCGTCTGACGATCCTTCTCAAAGTCAAACCATGGCAATCAGGTTAAAGGGATCGATAGGCTACATTCCTCCAGAGTATGGCATGGGAGGCCAAGTTTCCATCCTTGGAGATGTTTATAGTTTTGGAATACTATTGCTAGAAATGTTCATAGGAAGACGACCTACCGATGGCATGTTCAAAGATGGTCTAAGCATTCACCAGTTCACTGCCATGGCGATGCCTGACCATGCCATGGACATAGTTGACCCTTTGTGGCTCATCGAATGTGAAGATGTAGATGCTGATGGAAGCCCAGTTCAGGCAAGATGGTTGAAGGAATGCTCAGTTTCGGTGATGCAAATTGGAATCTCATGCTTTGCGATATCACCATCAGAGCGGATGCTTGTGGATGTTGTTGTCAACAAACTAAAGAAAATTAGAGATTCCTACCTCAATCTAAGAGGTAGAGGCTTGAAATATAAATGTGAGAGTTCCATTCTCCCTGACCCCATGGTCTAA

Protein Analysis

340

Amino Acids

37.61

Weight (kDa)

5.73

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1013
AccB7I CCANNNNNTGG 2 cut(s) 599, 754
AccBSI CCGCTC 1 cut(s) 898
AciI CCGC 1 cut(s) 898
AclI AACGTT 1 cut(s) 456
AclWI GGATC 2 cut(s) 527, 580
AcsI RAATTY 1 cut(s) 157
AcyI GRCGYC 1 cut(s) 524
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 6 cut(s) 147, 520, 599, 689, 754, 820
AgsI TTSAA 6 cut(s) 314, 361, 426, 700, 835, 976
AjnI CCWGG 1 cut(s) 152
AloI GAACNNNNNNTCC 2 cut(s) 801, 833
AluBI AGCT 2 cut(s) 356, 482
AluI AGCT 2 cut(s) 356, 482
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 2 cut(s) 527, 580
AoxI GGCC 3 cut(s) 149, 217, 610
ApoI RAATTY 1 cut(s) 157
AseI ATTAAT 1 cut(s) 366
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 2 cut(s) 150, 218
AsuHPI GGTGA 5 cut(s) 179, 503, 710, 865, 879
BarI GAAGNNNNNNTAC 4 cut(s) 294, 326, 667, 699
BbsI GAAGAC 1 cut(s) 682
BccI CCATC 6 cut(s) 629, 683, 698, 800, 822, 898
BciT130I CCWGG 1 cut(s) 154
BclI TGATCA 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 2 cut(s) 125, 659
Bme1390I CCNGG 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 150, 218
BmiI GGNNCC 2 cut(s) 132, 512
BmrFI CCNGG 1 cut(s) 154
BmrI ACTGGG 2 cut(s) 204, 809
BmsI GCATC 5 cut(s) 335, 729, 790, 846, 891
BmuI ACTGGG 2 cut(s) 204, 809
BpiI GAAGAC 1 cut(s) 682
BpmI CTGGAG 1 cut(s) 576
Bpu10I CCTNAGC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 69
Bsa29I ATCGAT 1 cut(s) 575
BsaHI GRCGYC 1 cut(s) 524
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 7 cut(s) 152, 228, 552, 625, 732, 753, 1011
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 6 cut(s) 147, 520, 599, 689, 754, 820
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 3 cut(s) 199, 721, 815
BseBI CCWGG 1 cut(s) 154
BseCI ATCGAT 1 cut(s) 575
BseDI CCNNGG 7 cut(s) 152, 228, 552, 625, 732, 753, 1011
BseGI GGATG 5 cut(s) 326, 349, 621, 906, 916
BseLI CCNNNNNNNGG 6 cut(s) 147, 520, 599, 689, 754, 820
BseMII CTCAG 1 cut(s) 858
BseNI ACTGG 3 cut(s) 199, 721, 815
BseRI GAGGAG 1 cut(s) 229
BshFI GGCC 3 cut(s) 151, 219, 612
BshVI ATCGAT 1 cut(s) 575
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 6 cut(s) 147, 520, 599, 689, 754, 820
BsmAI GTCTC 1 cut(s) 64
BsmI GAATGC 3 cut(s) 353, 714, 845
BsnI GGCC 3 cut(s) 151, 219, 612
Bso31I GGTCTC 1 cut(s) 64
Bsp143I GATC 3 cut(s) 99, 532, 572
Bsp19I CCATGG 5 cut(s) 228, 552, 732, 753, 1011
BspACI CCGC 1 cut(s) 898
BspANI GGCC 3 cut(s) 151, 219, 612
BspCNI CTCAG 1 cut(s) 857
BspDI ATCGAT 1 cut(s) 575
BspLI GGNNCC 2 cut(s) 132, 512
BspPI GGATC 2 cut(s) 527, 580
BspTNI GGTCTC 1 cut(s) 64
BsrBI CCGCTC 1 cut(s) 898
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 3 cut(s) 199, 721, 815
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 7 cut(s) 152, 228, 552, 625, 732, 753, 1011
BssMI GATC 3 cut(s) 99, 532, 572
BssNI GRCGYC 1 cut(s) 524
BssT1I CCWWGG 6 cut(s) 228, 552, 625, 732, 753, 1011
Bst2UI CCWGG 1 cut(s) 154
BstACI GRCGYC 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 27, 31
BstDEI CTNAG 5 cut(s) 21, 162, 710, 844, 959
BstDSI CCRYGG 5 cut(s) 228, 552, 732, 753, 1011
BstENI CCTNNNNNAGG 1 cut(s) 518
BstF5I GGATG 5 cut(s) 326, 349, 621, 906, 916
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 3 cut(s) 102, 535, 575
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 3 cut(s) 99, 532, 572
BstMWI GCNNNNNNNGC 1 cut(s) 609
BstNI CCWGG 1 cut(s) 154
BstNSI RCATGY 2 cut(s) 29, 697
BstSCI CCNGG 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 682
Bsu15I ATCGAT 1 cut(s) 575
BsuRI GGCC 3 cut(s) 151, 219, 612
BsuTUI ATCGAT 1 cut(s) 575
BtgI CCRYGG 5 cut(s) 228, 552, 732, 753, 1011
BtgZI GCGATG 1 cut(s) 752
BtsCI GGATG 5 cut(s) 326, 349, 621, 906, 916
BtsI GCAGTG 1 cut(s) 726
BtsIMutI CAGTG 2 cut(s) 192, 726
Cac8I GCNNGC 2 cut(s) 27, 31
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 2 cut(s) 150, 218
ClaI ATCGAT 1 cut(s) 575
CseI GACGC 1 cut(s) 513
Csp6I GTAC 1 cut(s) 118
CspCI CAANNNNNGTGG 2 cut(s) 395, 430
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 5 cut(s) 21, 162, 710, 844, 959
DpnI GATC 3 cut(s) 101, 534, 574
DpnII GATC 3 cut(s) 99, 532, 572
DrdI GACNNNNNNGTC 1 cut(s) 1013
DseDI GACNNNNNNGTC 1 cut(s) 1013
Eco130I CCWWGG 6 cut(s) 228, 552, 625, 732, 753, 1011
Eco31I GGTCTC 1 cut(s) 64
Eco32I GATATC 1 cut(s) 885
EcoNI CCTNNNNNAGG 1 cut(s) 518
EcoO109I RGGNCCY 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 152
EcoRV GATATC 1 cut(s) 885
EcoT14I CCWWGG 6 cut(s) 228, 552, 625, 732, 753, 1011
ErhI CCWWGG 6 cut(s) 228, 552, 625, 732, 753, 1011
FbaI TGATCA 1 cut(s) 99
FokI GGATG 5 cut(s) 313, 356, 608, 913, 923
FspBI CTAG 2 cut(s) 125, 659
GlaI GCGC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 576
HaeIII GGCC 3 cut(s) 151, 219, 612
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 513
HhaI GCGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 524
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HincII GTYRAC 2 cut(s) 766, 922
HindII GTYRAC 2 cut(s) 766, 922
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 4 cut(s) 137, 282, 867, 944
HpaII CCGG 1 cut(s) 56
HphI GGTGA 5 cut(s) 179, 503, 710, 865, 879
Hpy166II GTNNAC 3 cut(s) 726, 766, 922
Hpy188I TCNGA 2 cut(s) 529, 895
Hpy188III TCNNGA 3 cut(s) 86, 464, 593
Hpy8I GTNNAC 3 cut(s) 726, 766, 922
HpyAV CCTTC 4 cut(s) 292, 320, 546, 829
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 4 cut(s) 29, 351, 374, 859
HpyF10VI GCNNNNNNNGC 1 cut(s) 609
HpyF3I CTNAG 5 cut(s) 21, 162, 710, 844, 959
HpySE526I ACGT 1 cut(s) 456
Hsp92I GRCGYC 1 cut(s) 524
HspAI GCGC 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 3 cut(s) 99, 532, 572
LmnI GCTCC 1 cut(s) 323
LweI GCATC 5 cut(s) 335, 729, 790, 846, 891
MaeI CTAG 2 cut(s) 125, 659
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 2 cut(s) 437, 491
MalI GATC 3 cut(s) 101, 534, 574
MbiI CCGCTC 1 cut(s) 898
MboI GATC 3 cut(s) 99, 532, 572
MboII GAAGA 5 cut(s) 381, 452, 482, 687, 803
MfeI CAATTG 2 cut(s) 375, 426
MluCI AATT 8 cut(s) 15, 157, 270, 363, 375, 426, 861, 936
MlyI GAGTC 1 cut(s) 131
MseI TTAA 5 cut(s) 14, 36, 305, 366, 566
MslI CAYNNNNRTG 4 cut(s) 50, 489, 731, 737
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 154
MunI CAATTG 2 cut(s) 375, 426
Mva1269I GAATGC 3 cut(s) 353, 714, 845
MvaI CCWGG 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 609
NcoI CCATGG 5 cut(s) 228, 552, 732, 753, 1011
NdeII GATC 3 cut(s) 99, 532, 572
NlaIV GGNNCC 2 cut(s) 132, 512
NmuCI GTSAC 2 cut(s) 437, 491
NspI RCATGY 2 cut(s) 29, 697
PaeI GCATGC 1 cut(s) 29
PctI GAATGC 3 cut(s) 353, 714, 845
PfeI GAWTC 3 cut(s) 282, 867, 944
PflMI CCANNNNNTGG 2 cut(s) 599, 754
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PshBI ATTAAT 1 cut(s) 366
Psp1406I AACGTT 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 2 cut(s) 132, 512
PspPI GGNCC 2 cut(s) 150, 218
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 4 cut(s) 50, 489, 731, 737
SaqAI TTAA 5 cut(s) 14, 36, 305, 366, 566
Sau3AI GATC 3 cut(s) 99, 532, 572
Sau96I GGNCC 2 cut(s) 150, 218
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 154
SfaNI GCATC 5 cut(s) 335, 729, 790, 846, 891
SmiMI CAYNNNNRTG 4 cut(s) 50, 489, 731, 737
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
SphI GCATGC 1 cut(s) 29
Sse9I AATT 8 cut(s) 15, 157, 270, 363, 375, 426, 861, 936
SsiI CCGC 1 cut(s) 898
SspI AATATT 1 cut(s) 370
SspMI CTAG 2 cut(s) 125, 659
StyD4I CCNGG 1 cut(s) 152
StyI CCWWGG 6 cut(s) 228, 552, 625, 732, 753, 1011
TaiI ACGT 1 cut(s) 459
TaqI TCGA 2 cut(s) 575, 783
TasI AATT 8 cut(s) 15, 157, 270, 363, 375, 426, 861, 936
TfiI GAWTC 3 cut(s) 282, 867, 944
Tru1I TTAA 5 cut(s) 14, 36, 305, 366, 566
Tru9I TTAA 5 cut(s) 14, 36, 305, 366, 566
TscAI CASTG 2 cut(s) 199, 733
TseFI GTSAC 2 cut(s) 437, 491
Tsp45I GTSAC 2 cut(s) 437, 491
TspDTI ATGAA 7 cut(s) 17, 84, 360, 381, 422, 458, 658
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 2 cut(s) 199, 733
Van91I CCANNNNNTGG 2 cut(s) 599, 754
VspI ATTAAT 1 cut(s) 366
XagI CCTNNNNNAGG 1 cut(s) 518
XapI RAATTY 1 cut(s) 157
XceI RCATGY 2 cut(s) 29, 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XspI CTAG 2 cut(s) 125, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.