Rorug02G0333800

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
41415586 .. 41415976
391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0333800.1

Sequence Viewer

Length: 270 bp
ATGCAAGGCCTCGTCGGCTTGGTCCGCGAGTCCCTTGACTTCCGAATCAGACTTTTCTTTAAGCCACTGGCAGCGCGTGGGATTCCTCCAGTGGTCCCCGATGATGAGGCGCTGCCGATTCTGTGGCGCAAGGGCGAGTTGATTGGGTCTGGTGCCTTCGGGCGGGTCTATATAGGGATGAACCTCGATTCCGGAGAGCTTATTGTCGTTAAACAGGTTTCAATTGCTGCAAGTATTGCTTCAAAGGAGAAGACACAGGCATGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

89

Amino Acids

9.67

Weight (kDa)

8.98

Isoelectric Point (pI)

19.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AccII CGCG 2 cut(s) 27, 76
AccIII TCCGGA 1 cut(s) 191
AciI CCGC 2 cut(s) 25, 163
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 2 cut(s) 222, 243
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Aor13HI TCCGGA 1 cut(s) 191
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 3 cut(s) 71, 112, 227
AspLEI GCGC 3 cut(s) 76, 112, 129
AspS9I GGNCC 2 cut(s) 22, 94
AvaII GGWCC 2 cut(s) 22, 94
BanI GGYRCC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 257
BbvI GCAGC 3 cut(s) 83, 99, 214
BfoI RGCGCY 1 cut(s) 113
BglI GCCNNNNNGGC 1 cut(s) 15
BisI GCNGC 3 cut(s) 72, 113, 228
BlsI GCNGC 3 cut(s) 73, 114, 229
Bme18I GGWCC 2 cut(s) 22, 94
BmgT120I GGNCC 2 cut(s) 22, 94
BmiI GGNNCC 2 cut(s) 96, 154
BpiI GAAGAC 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 2 cut(s) 72, 89
BseAI TCCGGA 1 cut(s) 191
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 162
BseNI ACTGG 2 cut(s) 72, 89
BseXI GCAGC 3 cut(s) 83, 99, 214
Bsh1236I CGCG 2 cut(s) 27, 76
BshFI GGCC 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 192
BslFI GGGAC 2 cut(s) 16, 80
BslI CCNNNNNNNGG 1 cut(s) 162
BsmFI GGGAC 2 cut(s) 16, 80
BsnI GGCC 1 cut(s) 9
Bsp13I TCCGGA 1 cut(s) 191
BspACI CCGC 2 cut(s) 25, 163
BspANI GGCC 1 cut(s) 9
BspEI TCCGGA 1 cut(s) 191
BspFNI CGCG 2 cut(s) 27, 76
BspLI GGNNCC 2 cut(s) 96, 154
BspT107I GGYRCC 1 cut(s) 152
BsrI ACTGG 2 cut(s) 72, 89
BstAPI GCANNNNNTGC 1 cut(s) 236
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 2 cut(s) 27, 76
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 3 cut(s) 76, 112, 129
BstMWI GCNNNNNNNGC 3 cut(s) 15, 24, 236
BstNSI RCATGY 1 cut(s) 264
BstUI CGCG 2 cut(s) 27, 76
BstV1I GCAGC 3 cut(s) 83, 99, 214
BstV2I GAAGAC 1 cut(s) 257
BsuRI GGCC 1 cut(s) 9
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 65, 96
CfoI GCGC 3 cut(s) 76, 112, 129
Cfr13I GGNCC 2 cut(s) 22, 94
CviAII CATG 1 cut(s) 261
CviJI RGCY 4 cut(s) 9, 18, 64, 199
CviKI_1 RGCY 4 cut(s) 9, 18, 64, 199
Eco147I AGGCCT 1 cut(s) 9
Eco47I GGWCC 2 cut(s) 22, 94
FaeI CATG 1 cut(s) 264
FaiI YATR 3 cut(s) 171, 173, 262
FalI AAGNNNNNCTT 2 cut(s) 223, 255
FaqI GGGAC 2 cut(s) 16, 80
FatI CATG 1 cut(s) 260
FauI CCCGC 1 cut(s) 156
Fnu4HI GCNGC 3 cut(s) 72, 113, 228
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 3 cut(s) 72, 113, 228
GlaI GCGC 3 cut(s) 75, 111, 128
GluI GCNGC 3 cut(s) 72, 113, 228
GsuI CTGGAG 1 cut(s) 72
HaeII RGCGCY 1 cut(s) 113
HaeIII GGCC 1 cut(s) 9
HapII CCGG 1 cut(s) 192
HhaI GCGC 3 cut(s) 76, 112, 129
Hin1II CATG 1 cut(s) 264
Hin6I GCGC 3 cut(s) 74, 110, 127
HinP1I GCGC 3 cut(s) 74, 110, 127
HinfI GANTC 5 cut(s) 29, 45, 82, 118, 188
HpaII CCGG 1 cut(s) 192
Hpy188I TCNGA 3 cut(s) 44, 50, 269
Hpy188III TCNNGA 1 cut(s) 192
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 4, 230
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 24, 236
Hsp92II CATG 1 cut(s) 264
HspAI GCGC 3 cut(s) 74, 110, 127
Kpn2I TCCGGA 1 cut(s) 191
LpnPI CCDG 6 cut(s) 53, 102, 135, 200, 205, 242
Lsp1109I GCAGC 3 cut(s) 83, 99, 214
MboII GAAGA 1 cut(s) 262
MfeI CAATTG 1 cut(s) 222
MluCI AATT 1 cut(s) 222
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 4 cut(s) 20, 96, 100, 194
MroI TCCGGA 1 cut(s) 191
MseI TTAA 2 cut(s) 60, 210
MslI CAYNNNNRTG 1 cut(s) 259
MspI CCGG 1 cut(s) 192
MunI CAATTG 1 cut(s) 222
MvnI CGCG 2 cut(s) 27, 76
MwoI GCNNNNNNNGC 3 cut(s) 15, 24, 236
NlaIII CATG 1 cut(s) 264
NlaIV GGNNCC 2 cut(s) 96, 154
NspI RCATGY 1 cut(s) 264
PceI AGGCCT 1 cut(s) 9
PfeI GAWTC 4 cut(s) 45, 82, 118, 188
PkrI GCNGC 3 cut(s) 73, 114, 229
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PspN4I GGNNCC 2 cut(s) 96, 154
PspPI GGNCC 2 cut(s) 22, 94
RseI CAYNNNNRTG 1 cut(s) 259
SaqAI TTAA 2 cut(s) 60, 210
SatI GCNGC 3 cut(s) 72, 113, 228
Sau96I GGNCC 2 cut(s) 22, 94
SchI GAGTC 1 cut(s) 38
SetI ASST 3 cut(s) 186, 201, 219
SinI GGWCC 2 cut(s) 22, 94
SmiMI CAYNNNNRTG 1 cut(s) 259
Sse9I AATT 1 cut(s) 222
SseBI AGGCCT 1 cut(s) 9
SsiI CCGC 2 cut(s) 25, 163
StuI AGGCCT 1 cut(s) 9
TaqI TCGA 1 cut(s) 186
TasI AATT 1 cut(s) 222
TfiI GAWTC 4 cut(s) 45, 82, 118, 188
Tru1I TTAA 2 cut(s) 60, 210
Tru9I TTAA 2 cut(s) 60, 210
TscAI CASTG 2 cut(s) 72, 96
TseI GCWGC 3 cut(s) 71, 112, 227
TspDTI ATGAA 1 cut(s) 194
TspRI CASTG 2 cut(s) 72, 96
VpaK11BI GGWCC 2 cut(s) 22, 94
XceI RCATGY 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.