MD12G1135000.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
21100020 .. 21103603
3584 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1135000.v1.1.491

Sequence Viewer

Length: 3141 bp
ATGGAGCATTCAAGTAGCACTCAAACCAAGCTGCTTGTGTTTATACACTTTTATGGCTTGATTCTTTTGTGCATGAGCGCCGCAGGTCTGGAAGCTTCGACACCCCCTAGCAGTAGCACTGCCCTTGGAAATGAAACTGATCGCATGGTGCTGCTTGACTTCAAGAAAAGAATCGTTGACGATCCTTTTCTTATCATGAGCTCTTGGAATGATTCTGTCCATTTCTGCAGTTGGGTAGGCGTTACATGCAACAATTCCATCAAAAGAGTCTTGACGATGGAGCTGCAGTCTCAGAAATTGGTCGGCTCCATACCACCTTCTATTGGAAATCTTACTTATCTTACTGGAATCAATCTGAGAAAGAACAATTTTCGTGGTGAAATTCCTCAAGAATTGGGTCGTCTACAAAGCCTGCAACACCTCAACCTGTCTGTCAATTCCTTCAGCGGGAAGATTCCAACTAATATTTCTCACTGTACAGAACTAAGAGTGCTTGACCTTTACTCCAATACACTTATTGGGCCGATTCCAGACCAACTCAGTTCGTTGTTGGATTTAAATATTCTATGGTTTGATACAAACAATCTCACTGGAACTATCCCAAGTTGGATAGGAAACTTTTCTTCTTTGTATAGTCTTTATATTGGTGGAAACAACTTTCAAGGAAGTATACCCAATGAGCTCGGGCATCTTACAGGCTTGCAAGCATTCTCAGTTGCAGAAAACAATCTGTCTGGTAAGGTCCCTCCTTCAATCTATAATATTTCTTCCATATCCATTTTCGGTGTCAGTCAGAACCAGCTTCATGGAGAGCTACCGCCAAATGTTGGCGTTATTCTTCCTAATCTCGAACAATTTCATGTTGGTGGCAACAAATTCACAGGAAATATTCCTGCATCGTTCTCAAATGCTTCTAGACTTCTTTATCTCAATTTGCCTGAAAATGATCTCACTGGAACAGTTCCTGGTGAAAGCCTTGGAAGATTGCGAAGCTTAGTTGGACTAAACTTTGGTGTTAATAGACTAGGAACTGGAAAAATTGGTGACCTGAATTTCATCAGCTTCTTGGCTAATTGTACAAGTCTGGAGGAGTTGGGTCTTCACCATAACCAATTCAGAGATGAATTGCCAAAGTCCATATCCAACCTTTCCACCCAACTAACCTCTCTTACAATGGAGAAAAACTTGATATATGGAAGCATGGATAGAGGCATCAGCAATCTTGTAAACTTGACCGTATTTGGAATAAACTATAACTTTCTCAGCGGTAAGATCCCTGAAGAAATTGGGAGGCTTCAGAAGTTAGGGGAACTATATTTGGATGACAACAAGTTTTATGGGCCAATTCCATCTTCCTTAGGTAACTTGACTTCATTGACAGAGCTCTACATCAGCGGCAATAGGCTTGAGGGAAGCATTCCTCCAACTCTTGCTAACTGCCAACGTCTATTGGCACTTGACCTGTCCCGAAACAATTTAACAGGCACCATACCTCAAGAGGTTATTGGGATTTCATCTCTTTCAATTTATTTGCTCCTGTCTAACAATTACTTGACTGGTTCACTACCAGCTAAAGTGGGCGATTTGGTACAAATAGTGGAGCTAGATGTGTCTGTAAACAACTTGTCGGGTGAAATCCCTACGACACTCGGCAATTGTATTATGTTGGAGCGCTTGTACTTGGCAAATAACAAATTTGAAGGAACAATTCCTCAATCTCTCAAAAGTTTAAGAAGCTTGGAAGAGATGGATATTTCGAGCAATAATTTTTCTGGGCAAATTCCTGAATTTATAGGCAAGTTAAGTTTTCTCAAGAATCTCAATGTTTCTAATAATAATTTCCAAGGCGAATTACCTAAAGAAGGGATCTTTCTAAATGCAAGTGGTCTCTCAATTCTTGGAAATGGCAAGCTTTGTGGTGGCATCCCACGATTAAGTCTACCTCCATGCTCCAACATAAAGGCTCATTCATCTCGAAGATTACTTGCCCCAAAAGTAGTTATCCCTGCAGCTTGTGGACTTGCATTCATAATTGCTCTGTCATGCTTTATTGTTGCACGTTCAATGCTTAAGAAGCCAAGAGGTTTACCGGCAAGTTCACGTTCTTATAAGGATTGGAAATCAGGTGTCTCTTACAAAGAACTTGTTGAGTCAACTAACAGGTTCTCTAGAGAAAATCTGATTGGTTCAGGAAGTTTTGGTTCTGTTTACAAAGGAGTACTCCCTAGTGATGGAAATGTAGTTGCAGTTAAGGTATTAAACCTTCAACAACAAGGAGCTTCCAAGAGTTTCATTCGTGAATGTGAAGCTTTAAGAAGTATAAGGCACCGTAATCTTCTCAAGATCATAACTGCTTGTTCAAGCATTGACAATCAAGGCAATGACTTTAAAAGTCTAGTGTTTGAGTACATGGTAAATGGAAGTCTGGATGTGTGGTTGCATGATGAGGAATCTCATAGCAAGAGGTTGAGCTTTATCCAAAGACTCAATATTGCAATTGATGTTGCTTCTGCATTGGATTACCTCCACCACCATTGTGATACGGCAATTGTTCACTCTGATCTAAAGCCAAGCAATGTTCTCCTTGATGAAGATATGGTGGCTCATGTTGGTGACTTTGGTTTAGCACGGTTCCTCTTGGAAGCATCAAATAACGCCTCCCCAAGTCAAACCATGTCAGCCGTGCTCAAGGGTTCCATAGGCTACATTCCTCCGGAGTATGGCATGGGAGGCCAAGTCTCCACACTAGGAGATGTTTATAGCTTTGGAATACTGTTGCTAGAAATGTTCACTGGAAAAAGACCTACAGATGACATGTTCAAGGATGGTCTAAGCATTCACCAATTTGCAGCCATGGCGATGCCCGACCATGCCGGTGACATAGTTGACCCTTCATTACTCTTTGAAAGAGAAGAAGCAGATGCTAATGATGACAGATGCAGAAATGATGTACACGAAAAACCAATTATAAAATATCCGGACCGCAGCTCTGTCCAAGGAAGAAGCTTGGAGGAATGCTTGGTTTCTGTGGTGCAGATAGGACTCTCTTGCTCTGCAATTTCACCAGGAGATCGGATGCTTATGGATGTCGTCGTCAACAAAATGAAGGCAATAAGGGACTCGTATCTGAAAATTCGATAA

Protein Analysis

1047

Amino Acids

114.33

Weight (kDa)

6.15

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 45 - 84 9.5e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 89 - 190 7.2e-07 Leucine-rich repeat region
LRR_14 PF23598 132 - 338 6e-11 Leucine-rich repeat region
LRR_8 PF13855 458 - 518 5.8e-06 Leucine rich repeat
LRR_14 PF23598 474 - 611 8e-09 Leucine-rich repeat region
LRR_8 PF13855 556 - 614 6e-06 Leucine rich repeat
Pkinase PF00069 723 - 941 1.4e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 725 - 941 1.8e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2109, 2969
Acc36I ACCTGC 1 cut(s) 74
AccB1I GGYRCC 2 cut(s) 1484, 2325
AccB7I CCANNNNNTGG 1 cut(s) 827
AccI GTMKAC 3 cut(s) 403, 670, 1939
AccIII TCCGGA 2 cut(s) 2713, 2977
AciI CCGC 6 cut(s) 81, 447, 818, 1266, 1395, 2983
AclWI GGATC 3 cut(s) 176, 1267, 1874
AcsI RAATTY 7 cut(s) 381, 875, 1051, 1694, 1779, 1787, 3132
AcuI CTGAAG 3 cut(s) 427, 1280, 1299
AfaI GTAC 7 cut(s) 478, 1078, 1590, 1679, 2220, 2408, 2952
AfeI AGCGCT 1 cut(s) 1673
AfiI CCNNNNNNNGG 6 cut(s) 323, 447, 827, 1862, 2231, 2720
AflII CTTAAG 1 cut(s) 2069
AflIII ACRYGT 1 cut(s) 2814
AjnI CCWGG 2 cut(s) 964, 3064
AjuI GAANNNNNNNTTGG 6 cut(s) 451, 483, 1336, 1368, 2166, 2198
AleI CACNNNNGTG 1 cut(s) 2535
Alw21I GWGCWC 4 cut(s) 203, 684, 1386, 2688
Alw26I GTCTC 4 cut(s) 294, 1892, 2134, 2743
AlwI GGATC 3 cut(s) 176, 1267, 1874
AlwNI CAGNNNCTG 1 cut(s) 965
Ama87I CYCGRG 1 cut(s) 683
Aor13HI TCCGGA 2 cut(s) 2713, 2977
Aor51HI AGCGCT 1 cut(s) 1673
AoxI GGCC 3 cut(s) 521, 1340, 2731
ApeKI GCWGC 6 cut(s) 31, 151, 283, 2009, 2849, 2985
ApoI RAATTY 7 cut(s) 381, 875, 1051, 1694, 1779, 1787, 3132
Asp700I GAANNNNTTC 2 cut(s) 619, 855
AspLEI GCGC 2 cut(s) 80, 1674
AspS9I GGNCC 4 cut(s) 521, 742, 1340, 2980
AsuHPI GGTGA 9 cut(s) 389, 980, 1055, 1094, 1643, 2624, 2831, 2888, 3054
AvaI CYCGRG 1 cut(s) 683
AvaII GGWCC 2 cut(s) 742, 2980
AxyI CCTNAGG 1 cut(s) 1357
BanI GGYRCC 2 cut(s) 1484, 2325
BanII GRGCYC 3 cut(s) 203, 684, 1386
BarI GAAGNNNNNNTAC 4 cut(s) 1354, 1386, 2247, 2279
BbsI GAAGAC 1 cut(s) 1091
Bbv12I GWGCWC 4 cut(s) 203, 684, 1386, 2688
BbvI GCAGC 6 cut(s) 18, 138, 270, 2021, 2861, 2997
BccI CCATC 6 cut(s) 266, 271, 1357, 1741, 2225, 2819
BceAI ACGGC 2 cut(s) 2559, 2666
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 2 cut(s) 966, 3066
BcoDI GTCTC 4 cut(s) 294, 1892, 2134, 2743
BfaI CTAG 9 cut(s) 108, 915, 1025, 1604, 2169, 2226, 2396, 2747, 2780
BfmI CTRYAG 4 cut(s) 226, 284, 2007, 2805
BfoI RGCGCY 2 cut(s) 81, 1675
BfrI CTTAAG 1 cut(s) 2069
BfuAI ACCTGC 1 cut(s) 74
BisI GCNGC 8 cut(s) 32, 81, 152, 284, 1396, 2010, 2850, 2986
BlsI GCNGC 8 cut(s) 33, 82, 153, 285, 1397, 2011, 2851, 2987
BmcAI AGTACT 1 cut(s) 2220
Bme1390I CCNGG 2 cut(s) 966, 3066
Bme18I GGWCC 2 cut(s) 742, 2980
BmeT110I CYCGRG 1 cut(s) 683
BmgT120I GGNCC 4 cut(s) 521, 742, 1340, 2980
BmiI GGNNCC 6 cut(s) 307, 744, 1486, 2327, 2633, 2695
BmrFI CCNGG 2 cut(s) 966, 3066
BmsI GCATC 9 cut(s) 697, 905, 1221, 1932, 2654, 2850, 2911, 2927, 3066
BpiI GAAGAC 1 cut(s) 1091
BpmI CTGGAG 1 cut(s) 1106
BpuEI CTTGAG 6 cut(s) 372, 1427, 1479, 1796, 2324, 2672
BsaI GGTCTC 1 cut(s) 1892
BsaJI CCNNGG 5 cut(s) 124, 976, 1843, 2853, 2995
BsaWI WCCGGW 2 cut(s) 2713, 2977
BsaXI ACNNNNNCTCC 8 cut(s) 272, 302, 488, 518, 1661, 1691, 2721, 2751
Bsc4I CCNNNNNNNGG 6 cut(s) 323, 447, 827, 1862, 2231, 2720
Bse118I RCCGGY 2 cut(s) 2089, 2873
Bse1I ACTGG 6 cut(s) 349, 595, 958, 1036, 1561, 2797
Bse21I CCTNAGG 1 cut(s) 1357
Bse3DI GCAATG 2 cut(s) 2386, 2581
BseAI TCCGGA 2 cut(s) 2713, 2977
BseBI CCWGG 2 cut(s) 966, 3066
BseDI CCNNGG 5 cut(s) 124, 976, 1843, 2853, 2995
BseGI GGATG 6 cut(s) 1327, 1923, 2434, 2830, 3081, 3091
BseLI CCNNNNNNNGG 6 cut(s) 323, 447, 827, 1862, 2231, 2720
BseMI GCAATG 2 cut(s) 2386, 2581
BseMII CTCAG 5 cut(s) 305, 347, 553, 726, 1276
BseNI ACTGG 6 cut(s) 349, 595, 958, 1036, 1561, 2797
BseRI GAGGAG 1 cut(s) 1103
BseXI GCAGC 6 cut(s) 18, 138, 270, 2021, 2861, 2997
BsgI GTGCAG 1 cut(s) 3053
BshFI GGCC 3 cut(s) 523, 1342, 2733
BshNI GGYRCC 2 cut(s) 1484, 2325
BsiHKAI GWGCWC 4 cut(s) 203, 684, 1386, 2688
BsiHKCI CYCGRG 1 cut(s) 683
BsiSI CCGG 4 cut(s) 2090, 2714, 2874, 2978
BslFI GGGAC 3 cut(s) 728, 1450, 3131
BslI CCNNNNNNNGG 6 cut(s) 323, 447, 827, 1862, 2231, 2720
BsmAI GTCTC 4 cut(s) 294, 1892, 2134, 2743
BsmFI GGGAC 3 cut(s) 728, 1450, 3131
BsmI GAATGC 6 cut(s) 7, 707, 1416, 2024, 2835, 3020
BsnI GGCC 3 cut(s) 523, 1342, 2733
Bso31I GGTCTC 1 cut(s) 1892
BsoBI CYCGRG 1 cut(s) 683
Bsp1286I GDGCHC 4 cut(s) 203, 684, 1386, 2688
Bsp13I TCCGGA 2 cut(s) 2713, 2977
Bsp1407I TGTACA 3 cut(s) 476, 1076, 2950
Bsp143I GATC 8 cut(s) 139, 181, 946, 1272, 1866, 2343, 2560, 3070
Bsp19I CCATGG 1 cut(s) 2853
BspACI CCGC 6 cut(s) 81, 447, 818, 1266, 1395, 2983
BspANI GGCC 3 cut(s) 523, 1342, 2733
BspCNI CTCAG 5 cut(s) 304, 348, 552, 725, 1275
BspEI TCCGGA 2 cut(s) 2713, 2977
BspHI TCATGA 1 cut(s) 195
BspLI GGNNCC 6 cut(s) 307, 744, 1486, 2327, 2633, 2695
BspMAI CTGCAG 3 cut(s) 230, 288, 2011
BspMI ACCTGC 1 cut(s) 74
BspPI GGATC 3 cut(s) 176, 1267, 1874
BspT107I GGYRCC 2 cut(s) 1484, 2325
BspTI CTTAAG 1 cut(s) 2069
BspTNI GGTCTC 1 cut(s) 1892
BsrDI GCAATG 2 cut(s) 2386, 2581
BsrFI RCCGGY 2 cut(s) 2089, 2873
BsrGI TGTACA 3 cut(s) 476, 1076, 2950
BsrI ACTGG 6 cut(s) 349, 595, 958, 1036, 1561, 2797
BssAI RCCGGY 2 cut(s) 2089, 2873
BssECI CCNNGG 5 cut(s) 124, 976, 1843, 2853, 2995
BssMI GATC 8 cut(s) 139, 181, 946, 1272, 1866, 2343, 2560, 3070
BssNAI GTATAC 1 cut(s) 671
BssT1I CCWWGG 5 cut(s) 124, 976, 1843, 2853, 2995
Bst1107I GTATAC 1 cut(s) 671
Bst2UI CCWGG 2 cut(s) 966, 3066
Bst4CI ACNGT 6 cut(s) 476, 961, 1237, 2330, 2631, 2775
Bst6I CTCTTC 1 cut(s) 1737
BstAFI CTTAAG 1 cut(s) 2069
BstAUI TGTACA 3 cut(s) 476, 1076, 2950
BstC8I GCNNGC 4 cut(s) 413, 701, 705, 1910
BstDEI CTNAG 9 cut(s) 291, 356, 485, 539, 712, 994, 1262, 1357, 2831
BstDSI CCRYGG 1 cut(s) 2853
BstEII GGTNACC 1 cut(s) 1043
BstENI CCTNNNNNAGG 1 cut(s) 1860
BstF5I GGATG 6 cut(s) 1327, 1923, 2434, 2830, 3081, 3091
BstH2I RGCGCY 2 cut(s) 81, 1675
BstHHI GCGC 2 cut(s) 80, 1674
BstKTI GATC 8 cut(s) 142, 184, 949, 1275, 1869, 2346, 2563, 3073
BstMAI GTCTC 4 cut(s) 294, 1892, 2134, 2743
BstMBI GATC 8 cut(s) 139, 181, 946, 1272, 1866, 2343, 2560, 3070
BstMWI GCNNNNNNNGC 4 cut(s) 246, 2074, 2730, 2855
BstNI CCWGG 2 cut(s) 966, 3066
BstNSI RCATGY 2 cut(s) 249, 2818
BstPI GGTNACC 1 cut(s) 1043
BstSCI CCNGG 2 cut(s) 964, 3064
BstSFI CTRYAG 4 cut(s) 226, 284, 2007, 2805
BstV1I GCAGC 6 cut(s) 18, 138, 270, 2021, 2861, 2997
BstV2I GAAGAC 1 cut(s) 1091
BstX2I RGATCY 2 cut(s) 1272, 1866
BstXI CCANNNNNNTGG 1 cut(s) 806
BstYI RGATCY 2 cut(s) 1272, 1866
BstZ17I GTATAC 1 cut(s) 671
Bsu36I CCTNAGG 1 cut(s) 1357
BsuRI GGCC 3 cut(s) 523, 1342, 2733
BtgI CCRYGG 1 cut(s) 2853
BtgZI GCGATG 1 cut(s) 2873
BtsCI GGATG 6 cut(s) 1327, 1923, 2434, 2830, 3081, 3091
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 5 cut(s) 117, 472, 588, 951, 2790
BveI ACCTGC 1 cut(s) 74
Cac8I GCNNGC 4 cut(s) 413, 701, 705, 1910
CaiI CAGNNNCTG 1 cut(s) 965
CciI TCATGA 1 cut(s) 195
CfoI GCGC 2 cut(s) 80, 1674
Cfr10I RCCGGY 2 cut(s) 2089, 2873
Cfr13I GGNCC 4 cut(s) 521, 742, 1340, 2980
CpoI CGGWCCG 1 cut(s) 2980
Csp6I GTAC 7 cut(s) 477, 1077, 1589, 1678, 2219, 2407, 2951
CspCI CAANNNNNGTGG 6 cut(s) 355, 390, 1897, 1932, 2516, 2551
CspI CGGWCCG 1 cut(s) 2980
CviQI GTAC 7 cut(s) 477, 1077, 1589, 1678, 2219, 2407, 2951
DdeI CTNAG 9 cut(s) 291, 356, 485, 539, 712, 994, 1262, 1357, 2831
DpnI GATC 8 cut(s) 141, 183, 948, 1274, 1868, 2345, 2562, 3072
DpnII GATC 8 cut(s) 139, 181, 946, 1272, 1866, 2343, 2560, 3070
DraI TTTAAA 2 cut(s) 558, 2389
Eam1104I CTCTTC 1 cut(s) 1737
EarI CTCTTC 1 cut(s) 1737
Ecl136II GAGCTC 3 cut(s) 201, 682, 1384
Eco130I CCWWGG 5 cut(s) 124, 976, 1843, 2853, 2995
Eco24I GRGCYC 3 cut(s) 203, 684, 1386
Eco31I GGTCTC 1 cut(s) 1892
Eco47I GGWCC 2 cut(s) 742, 2980
Eco47III AGCGCT 1 cut(s) 1673
Eco53kI GAGCTC 3 cut(s) 201, 682, 1384
Eco57I CTGAAG 3 cut(s) 427, 1280, 1299
Eco81I CCTNAGG 1 cut(s) 1357
Eco88I CYCGRG 1 cut(s) 683
Eco91I GGTNACC 1 cut(s) 1043
EcoICRI GAGCTC 3 cut(s) 201, 682, 1384
EcoNI CCTNNNNNAGG 1 cut(s) 1860
EcoO109I RGGNCCY 1 cut(s) 742
EcoO65I GGTNACC 1 cut(s) 1043
EcoRII CCWGG 2 cut(s) 964, 3064
EcoT14I CCWWGG 5 cut(s) 124, 976, 1843, 2853, 2995
EcoT38I GRGCYC 3 cut(s) 203, 684, 1386
ErhI CCWWGG 5 cut(s) 124, 976, 1843, 2853, 2995
FaqI GGGAC 3 cut(s) 728, 1450, 3131
FauI CCCGC 1 cut(s) 440
FblI GTMKAC 3 cut(s) 403, 670, 1939
Fnu4HI GCNGC 8 cut(s) 32, 81, 152, 284, 1396, 2010, 2850, 2986
FokI GGATG 6 cut(s) 1334, 1910, 2441, 2837, 3088, 3098
FriOI GRGCYC 3 cut(s) 203, 684, 1386
Fsp4HI GCNGC 8 cut(s) 32, 81, 152, 284, 1396, 2010, 2850, 2986
FspBI CTAG 9 cut(s) 108, 915, 1025, 1604, 2169, 2226, 2396, 2747, 2780
GlaI GCGC 2 cut(s) 79, 1673
GluI GCNGC 8 cut(s) 32, 81, 152, 284, 1396, 2010, 2850, 2986
GsuI CTGGAG 1 cut(s) 1106
HaeII RGCGCY 2 cut(s) 81, 1675
HaeIII GGCC 3 cut(s) 523, 1342, 2733
HapII CCGG 4 cut(s) 2090, 2714, 2874, 2978
HhaI GCGC 2 cut(s) 80, 1674
Hin6I GCGC 2 cut(s) 78, 1672
HinP1I GCGC 2 cut(s) 78, 1672
HincII GTYRAC 4 cut(s) 178, 2154, 2887, 3097
HindII GTYRAC 4 cut(s) 178, 2154, 2887, 3097
HindIII AAGCTT 6 cut(s) 93, 991, 1735, 1910, 2307, 3004
HpaII CCGG 4 cut(s) 2090, 2714, 2874, 2978
HphI GGTGA 9 cut(s) 389, 980, 1055, 1094, 1643, 2624, 2831, 2888, 3054
Hpy188I TCNGA 9 cut(s) 294, 357, 795, 1118, 1299, 2181, 2560, 3075, 3129
Hpy99I CGWCG 1 cut(s) 3095
HpyAV CCTTC 8 cut(s) 327, 451, 759, 1694, 1856, 2273, 2901, 3100
HpyCH4III ACNGT 6 cut(s) 476, 961, 1237, 2330, 2631, 2775
HpyCH4IV ACGT 3 cut(s) 1444, 2059, 2101
HpyF10VI GCNNNNNNNGC 4 cut(s) 246, 2074, 2730, 2855
HpyF3I CTNAG 9 cut(s) 291, 356, 485, 539, 712, 994, 1262, 1357, 2831
HpySE526I ACGT 3 cut(s) 1444, 2059, 2101
HspAI GCGC 2 cut(s) 78, 1672
Kpn2I TCCGGA 2 cut(s) 2713, 2977
Kzo9I GATC 8 cut(s) 139, 181, 946, 1272, 1866, 2343, 2560, 3070
LmnI GCTCC 8 cut(s) 4, 280, 311, 1539, 1600, 1669, 1955, 2276
Lsp1109I GCAGC 6 cut(s) 18, 138, 270, 2021, 2861, 2997
LweI GCATC 9 cut(s) 697, 905, 1221, 1932, 2654, 2850, 2911, 2927, 3066
MaeI CTAG 9 cut(s) 108, 915, 1025, 1604, 2169, 2226, 2396, 2747, 2780
MaeII ACGT 3 cut(s) 1444, 2059, 2101
MaeIII GTNAC 5 cut(s) 241, 1043, 1361, 2612, 2876
MalI GATC 8 cut(s) 141, 183, 948, 1274, 1868, 2345, 2562, 3072
MboI GATC 8 cut(s) 139, 181, 946, 1272, 1866, 2343, 2560, 3070
MfeI CAATTG 3 cut(s) 1654, 2496, 2547
MflI RGATCY 2 cut(s) 1272, 1866
MhlI GDGCHC 4 cut(s) 203, 684, 1386, 2688
MlyI GAGTC 5 cut(s) 276, 2159, 2478, 3036, 3113
MmeI TCCRAC 8 cut(s) 482, 531, 587, 979, 1167, 1448, 1647, 1977
MroI TCCGGA 2 cut(s) 2713, 2977
MroXI GAANNNNTTC 2 cut(s) 619, 855
MslI CAYNNNNRTG 6 cut(s) 51, 864, 2535, 2610, 2858, 2874
MspA1I CMGCKG 3 cut(s) 447, 1266, 1395
MspCI CTTAAG 1 cut(s) 2069
MspI CCGG 4 cut(s) 2090, 2714, 2874, 2978
MspR9I CCNGG 2 cut(s) 966, 3066
MunI CAATTG 3 cut(s) 1654, 2496, 2547
Mva1269I GAATGC 6 cut(s) 7, 707, 1416, 2024, 2835, 3020
MvaI CCWGG 2 cut(s) 966, 3066
MwoI GCNNNNNNNGC 4 cut(s) 246, 2074, 2730, 2855
NcoI CCATGG 1 cut(s) 2853
NdeII GATC 8 cut(s) 139, 181, 946, 1272, 1866, 2343, 2560, 3070
NlaIV GGNNCC 6 cut(s) 307, 744, 1486, 2327, 2633, 2695
NmeAIII GCCGAG 1 cut(s) 1629
NmuCI GTSAC 3 cut(s) 1043, 2612, 2876
NspI RCATGY 2 cut(s) 249, 2818
OliI CACNNNNGTG 1 cut(s) 2535
PagI TCATGA 1 cut(s) 195
PciI ACATGT 1 cut(s) 2814
PctI GAATGC 6 cut(s) 7, 707, 1416, 2024, 2835, 3020
PdmI GAANNNNTTC 2 cut(s) 619, 855
PfeI GAWTC 8 cut(s) 61, 171, 212, 348, 454, 526, 1816, 2450
PflMI CCANNNNNTGG 1 cut(s) 827
PkrI GCNGC 8 cut(s) 33, 82, 153, 285, 1397, 2011, 2851, 2987
PleI GAGTC 5 cut(s) 275, 2158, 2478, 3036, 3113
PpsI GAGTC 5 cut(s) 275, 2158, 2478, 3036, 3113
PpuMI RGGWCCY 1 cut(s) 742
PscI ACATGT 1 cut(s) 2814
PsiI TTATAA 2 cut(s) 2109, 2969
Psp124BI GAGCTC 3 cut(s) 203, 684, 1386
Psp5II RGGWCCY 1 cut(s) 742
Psp6I CCWGG 2 cut(s) 964, 3064
PspEI GGTNACC 1 cut(s) 1043
PspGI CCWGG 2 cut(s) 964, 3064
PspN4I GGNNCC 6 cut(s) 307, 744, 1486, 2327, 2633, 2695
PspPI GGNCC 4 cut(s) 521, 742, 1340, 2980
PspPPI RGGWCCY 1 cut(s) 742
PstI CTGCAG 3 cut(s) 230, 288, 2011
PstNI CAGNNNCTG 1 cut(s) 965
PsuI RGATCY 2 cut(s) 1272, 1866
RsaI GTAC 7 cut(s) 478, 1078, 1590, 1679, 2220, 2408, 2952
RsaNI GTAC 7 cut(s) 477, 1077, 1589, 1678, 2219, 2407, 2951
RseI CAYNNNNRTG 6 cut(s) 51, 864, 2535, 2610, 2858, 2874
Rsr2I CGGWCCG 1 cut(s) 2980
RsrII CGGWCCG 1 cut(s) 2980
SacI GAGCTC 3 cut(s) 203, 684, 1386
SatI GCNGC 8 cut(s) 32, 81, 152, 284, 1396, 2010, 2850, 2986
Sau3AI GATC 8 cut(s) 139, 181, 946, 1272, 1866, 2343, 2560, 3070
Sau96I GGNCC 4 cut(s) 521, 742, 1340, 2980
ScaI AGTACT 1 cut(s) 2220
SchI GAGTC 5 cut(s) 276, 2159, 2478, 3036, 3113
ScrFI CCNGG 2 cut(s) 966, 3066
SduI GDGCHC 4 cut(s) 203, 684, 1386, 2688
SfaNI GCATC 9 cut(s) 697, 905, 1221, 1932, 2654, 2850, 2911, 2927, 3066
SfcI CTRYAG 4 cut(s) 226, 284, 2007, 2805
SinI GGWCC 2 cut(s) 742, 2980
SmiI ATTTAAAT 1 cut(s) 558
SmiMI CAYNNNNRTG 6 cut(s) 51, 864, 2535, 2610, 2858, 2874
SmlI CTYRAG 7 cut(s) 387, 1406, 1494, 1811, 2069, 2339, 2687
SmoI CTYRAG 7 cut(s) 387, 1406, 1494, 1811, 2069, 2339, 2687
SsiI CCGC 6 cut(s) 81, 447, 818, 1266, 1395, 2983
SspI AATATT 5 cut(s) 466, 562, 763, 889, 2491
SspMI CTAG 9 cut(s) 108, 915, 1025, 1604, 2169, 2226, 2396, 2747, 2780
SstI GAGCTC 3 cut(s) 203, 684, 1386
StyD4I CCNGG 2 cut(s) 964, 3064
StyI CCWWGG 5 cut(s) 124, 976, 1843, 2853, 2995
SwaI ATTTAAAT 1 cut(s) 558
TaaI ACNGT 6 cut(s) 476, 961, 1237, 2330, 2631, 2775
TaiI ACGT 3 cut(s) 1447, 2062, 2104
TaqI TCGA 5 cut(s) 98, 849, 1757, 1975, 3136
TatI WGTACW 6 cut(s) 476, 1076, 1677, 2218, 2406, 2950
TauI GCSGC 2 cut(s) 83, 1398
TfiI GAWTC 8 cut(s) 61, 171, 212, 348, 454, 526, 1816, 2450
TscAI CASTG 5 cut(s) 124, 479, 595, 958, 2797
TseFI GTSAC 3 cut(s) 1043, 2612, 2876
TseI GCWGC 6 cut(s) 31, 151, 283, 2009, 2849, 2985
Tsp45I GTSAC 3 cut(s) 1043, 2612, 2876
TspRI CASTG 5 cut(s) 124, 479, 595, 958, 2797
Van91I CCANNNNNTGG 1 cut(s) 827
Vha464I CTTAAG 1 cut(s) 2069
VpaK11BI GGWCC 2 cut(s) 742, 2980
XagI CCTNNNNNAGG 1 cut(s) 1860
XapI RAATTY 7 cut(s) 381, 875, 1051, 1694, 1779, 1787, 3132
XbaI TCTAGA 2 cut(s) 914, 2168
XceI RCATGY 2 cut(s) 249, 2818
XmiI GTMKAC 3 cut(s) 403, 670, 1939
XmnI GAANNNNTTC 2 cut(s) 619, 855
XspI CTAG 9 cut(s) 108, 915, 1025, 1604, 2169, 2226, 2396, 2747, 2780
ZrmI AGTACT 1 cut(s) 2220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.