Rw3G010370

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
9929672 .. 9932998
3327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G010370.1

Sequence Viewer

Length: 3159 bp
ATGATGGGGGATTCACTATCAAATTGTAGGTGGTTTTTGCACAAATTCCTTCCTGTGTTCATTGTTTTATGCATGAGCACAGGTCTAGAATCTGCAACACTACCAAGTCTTGGAAATGAATCTGATCGTCTGGCACTTCTAGACTTCAAGAAAAGAATCACTGAAGATCCTCTCCATATCATGAACTCATGGAATGAATCCATGCATTTCTGCAGTTGGATAGGCGTCACATGCAACAATTCCACCAGAAGAGTCGTGACTTTGAACTTGCAAGCTCAAAAGTTGGCTGGCTCCATACCACTTTCTATAGGGAATCTTACCTATCTCACTGGAATCTACTTGATGAACAACAACTTTTATGGTGAAATTCCTCAGGAAATGGGTCGTCTCTTGCGCCTGCAATATCTCAACATGTCTGAAAACTCCTTTGGTGGGAAAATTCCGACTAATATATCTCACTGTACACAGCTGACAATGTTTGATCTTTGCTCCAATAAACTCATTGGGTCGATTCCGGATCAACTCAGTTCGTTGTCAAAATTAACTGTGTTATGTATTAGTCGGAACAATCTCACTGGAACCATCCCACGTTGGATTGGAAATTTTTCTTCTTTGTTTGCACTTTCTCTTGTTCAAAACAACTTGCAAGGAAGCATACCTAACGAGCTGGGGCGTCTAACAGCTTTACAGGCACTCAAACTTACCTTAAATAATCTTTCTGGTGTGATTCCTTCTTCAATCTATAATATTTCCTCCATAAATTATTTCACTGTTACTCAGAATCAACTGCATGGGGAGCTCCCACAAAACATTGGCATGACTCTTCCTAATCTGGAGGTATTTGCCGGCGGTGTCAACAAATTCACAGGAGCTGTTCCAGCATCATTGTCAAATGCTTCTAGACTTCGTATTCTTGATTTTGCTCAAAATGGTCTCACTGGTAAACTCCCTGCTGAAAATCTTCGAAGGTTGAAATGGTTAATTAGACTGAACTTCGAACAAAATTTTTTGGGAAGTGGGAAAGCTAGTGACCTTACTTCTCTCAGTTTCCTGGCTAATTGTACTAACCTTGAGGTGTTGAGTTTTTACGGTAATCGTCTTGGAGGAGAATTTCCAGAATCCATAGCCAACCTATCAACCAAGCTGAGGATATTTACAATGGGAGCCAATTTGATACATGGAAGCCTCCCGACTGGCATTGGAAATCTGGTAAACTTGACACTTCTGGGAATAGAACGTAACCACATATCCGGTAGTCTCCCTGATGCAATCGGGAAGCTTAACAAGTTAGAAGGACTGGAATTGAATCTTAACCGATTTTCAGGGCCAATCCCATCCTCCCTAGGTAACTTGACTTCAGTGACAAGGCTCTTCATGGATGGGAATAGGTTTCAGGGAGGCATACCTCCGAGTCTTGGGAACTGCCAAAATATATTAATACTCAACCTTTCTAGTAACAATCTAAATGGCACCATACCAAGAGAGGTAATGGCAATTAAATCCCTTTCGATTTCTTTGACCATGTCTAACAATTCTTTGACTGGTTCACTACCATCTGAAGTGGGTGGTTTGGTACATCTCGCAGAGCTAGACATATCAGGAAACAAGTTATCGGGTGAAATCCCTGAAACCCTCGGCAGTTGTAGTAGTTTGGGGCACCTGCTTTTGGAAGGTAATGAATTCAGTGGACATATTCCTCAGTCTATGGAAAATCTGAGAGGCTTGGAAGAGTTGGATATTTCATGCAATAACTTATCTGGCAAGCTTCCTGAATTTTTTGGCAAGTTTCGAGCTCTCAAGTATCTCAATCTTTCTCACAATGATTTTGAGGGTGAATTGCCCAAAGAAGGAATCTTTTCAAATGCAACTGGTATCTCCGTGCTCGGAAATGATAAGCTCTGTGGAGGAATTCCAGAATTAGTTCTACCTGCATGTTCCAGCAGAAAGCCTCATTCATCGAGAGGACTACTTGCCCCAGAAGTGATAAGCCCTTTAACTAGTGCAATTGCTTTAATAATTGCTCTCTCCTGCTTGGTTGCTGCCCGTTCATTGATGAAAAAGTCGATAGATGGACCTTTGCCTTCATCTTCTCATAATGATTCATATCCAAGTATCTCTTACTCGGAACTTGTGGAGTCAACTAACGGGTTTTCTGTGGACAACCTGATTGGTTCGGGAAGTTTTGGTTCTGTATACAAAGGATTACTCAGTAGTAATGGAATGGTGGTTGCTGTTAAGGTATTAAACCTTCAACAACAAGGAGCTTCGAAGAGTTTCATTGATGAATGCAGAGCTCTAAGAAGCACAAGGCACCGCAATCTTCTTAAGATAATAAATGCCTGTTCAAGCATTGATATTCAGGGAAATGACTTCAAAAGTCTAGTTTTTGAGTTCATGGAAAATGGAAGTCTAGACTCTTGGCTGCATCCCAAAGATGATGAGCAATCTCAAAGTAAGAAATTGAGCTTTGTCCAAAGGCTCAATATTGCAATTGATGTTGCTTGTGCATTAGATTATCTACATGACGGTTGTGAATTATCCATTGTTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTCGATGCGGACATGGTAGCCCATGTTGGTGACTTTGGTTTAGCAAGCTTTCTCTTTGAAGCATCAAATAATCATTCCAAAAGTCAGACCATGTCCGCTAGGCTAAAGGGTTCCATTGGCTACATTCCTCCAGAATATGGCATGGGATGTCAAGTTTCCATTCTGGGAGATATCTATAGCTATGGGATTCTATTGCTAGAAATGTTCACAGGGAAAAGGCCTACAGACGACCTGTTCAAAGATGGTCTAAGCATTCACCAATTCACAGCCATGGCTTTCCCTGACCGTGTCATGGACATAGTTGACACTTCATTGCTCCTGGAAGCAGATGAGGATAATGATGACAATAATGATAACAAATACAGCAATGACGTACAAGAAAGGCCGATAGCCGGGTATAAGGATAAAGGCCTAGTCAAAGCAAGAAGATCGGAAGAATGCTTGATTTCAGTGATGCAGATTGGTCTCTCATGCTCCACAGAATCACCAAGTGAGCGCATTCTGATGAATGTGGTTGTGAACAAGATGACTGCAATTAGAGATTCCTATCTCAAATTGACCAAGAACAAGTTTGTCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1052

Amino Acids

114.56

Weight (kDa)

6.1

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 40 - 79 5.8e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 125 - 311 1.6e-14 Leucine-rich repeat region
LRR_8 PF13855 156 - 215 9e-08 Leucine rich repeat
LRR_14 PF23598 349 - 457 5.1e-07 Leucine-rich repeat region
LRR_14 PF23598 392 - 481 7.1e-07 Leucine-rich repeat region
LRR_14 PF23598 470 - 608 9.7e-09 Leucine-rich repeat region
LRR_8 PF13855 550 - 609 1.4e-07 Leucine rich repeat
Pkinase PF00069 718 - 939 2.8e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 719 - 937 1.2e-38 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1668
Acc36I ACCTGC 2 cut(s) 1668, 1936
AccB1I GGYRCC 3 cut(s) 1469, 1656, 2310
AccB7I CCANNNNNTGG 2 cut(s) 110, 2714
AccI GTMKAC 1 cut(s) 2193
AccIII TCCGGA 1 cut(s) 514
AciI CCGC 4 cut(s) 849, 2314, 2585, 2673
AclWI GGATC 2 cut(s) 161, 525
AcuI CTGAAG 3 cut(s) 183, 1341, 1578
AcyI GRCGYC 2 cut(s) 225, 673
AdeI CACNNNGTG 1 cut(s) 3068
AfaI GTAC 4 cut(s) 463, 1063, 1575, 2952
AfiI CCNNNNNNNGG 9 cut(s) 110, 432, 1146, 1415, 1666, 1847, 2714, 2869, 2969
AflII CTTAAG 1 cut(s) 2324
AflIII ACRYGT 1 cut(s) 411
AhlI ACTAGT 1 cut(s) 1997
AjnI CCWGG 2 cut(s) 1050, 2895
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
Alw21I GWGCWC 5 cut(s) 80, 801, 1795, 1884, 2296
Alw26I GTCTC 4 cut(s) 392, 938, 1262, 3047
AlwI GGATC 2 cut(s) 161, 525
AlwNI CAGNNNCTG 1 cut(s) 872
Aor13HI TCCGGA 1 cut(s) 514
AoxI GGCC 4 cut(s) 1325, 2795, 2960, 2986
ApeKI GCWGC 2 cut(s) 2039, 2422
AseI ATTAAT 1 cut(s) 1436
Asp700I GAANNNNTTC 5 cut(s) 604, 960, 1855, 1920, 2273
AspA2I CCTAGG 1 cut(s) 1342
AspLEI GCGC 2 cut(s) 396, 3075
AspS9I GGNCC 2 cut(s) 1325, 2072
AsuC2I CCSGG 1 cut(s) 2971
AsuHPI GGTGA 7 cut(s) 374, 1628, 1844, 2618, 2825, 3054, 3145
AsuII TTCGAA 3 cut(s) 964, 996, 2267
AvaII GGWCC 1 cut(s) 2072
AvrII CCTAGG 1 cut(s) 1342
AxyI CCTNAGG 1 cut(s) 372
BaeGI GKGCMC 1 cut(s) 1659
BanI GGYRCC 3 cut(s) 1469, 1656, 2310
BanII GRGCYC 3 cut(s) 801, 1795, 2296
BarI GAAGNNNNNNTAC 4 cut(s) 1339, 1371, 2232, 2264
Bbv12I GWGCWC 5 cut(s) 80, 801, 1795, 1884, 2296
BbvCI CCTCAGC 1 cut(s) 1145
BbvI GCAGC 2 cut(s) 2026, 2409
BccI CCATC 6 cut(s) 590, 1342, 1373, 1561, 2063, 2813
BcgI CGANNNNNNTGC 2 cut(s) 2988, 3022
BciT130I CCWGG 2 cut(s) 1052, 2897
BcnI CCSGG 1 cut(s) 2971
BcoDI GTCTC 4 cut(s) 392, 938, 1262, 3047
BcuI ACTAGT 1 cut(s) 1997
BfmI CTRYAG 4 cut(s) 211, 306, 2752, 2799
BfrI CTTAAG 1 cut(s) 2324
BfuAI ACCTGC 2 cut(s) 1668, 1936
BisI GCNGC 2 cut(s) 2040, 2423
BlnI CCTAGG 1 cut(s) 1342
BlsI GCNGC 2 cut(s) 2041, 2424
Bme1390I CCNGG 3 cut(s) 1052, 2897, 2971
Bme18I GGWCC 1 cut(s) 2072
BmgT120I GGNCC 2 cut(s) 1325, 2072
BmiI GGNNCC 7 cut(s) 292, 580, 1165, 1471, 1658, 2312, 2689
BmrFI CCNGG 3 cut(s) 1052, 2897, 2971
BmsI GCATC 6 cut(s) 890, 1255, 2434, 2572, 2648, 3021
BpmI CTGGAG 2 cut(s) 854, 2691
Bpu10I CCTNAGC 1 cut(s) 1145
Bpu14I TTCGAA 3 cut(s) 964, 996, 2267
BpuEI CTTGAG 2 cut(s) 1091, 1781
BpuMI CCSGG 1 cut(s) 2971
BsaBI GATNNNNATC 2 cut(s) 2103, 3123
BsaHI GRCGYC 2 cut(s) 225, 673
BsaI GGTCTC 2 cut(s) 938, 3047
BsaJI CCNNGG 3 cut(s) 1342, 1633, 2847
BsaWI WCCGGW 2 cut(s) 514, 1250
Bsc4I CCNNNNNNNGG 9 cut(s) 110, 432, 1146, 1415, 1666, 1847, 2714, 2869, 2969
Bse118I RCCGGY 1 cut(s) 845
Bse1I ACTGG 7 cut(s) 334, 580, 943, 1198, 1302, 1546, 1873
Bse21I CCTNAGG 1 cut(s) 372
Bse3DI GCAATG 3 cut(s) 2575, 2888, 2950
Bse8I GATNNNNATC 2 cut(s) 2103, 3123
BseAI TCCGGA 1 cut(s) 514
BseBI CCWGG 2 cut(s) 1052, 2897
BseDI CCNNGG 3 cut(s) 1342, 1633, 2847
BseGI GGATG 5 cut(s) 582, 1334, 1384, 2425, 2729
BseJI GATNNNNATC 2 cut(s) 2103, 3123
BseLI CCNNNNNNNGG 9 cut(s) 110, 432, 1146, 1415, 1666, 1847, 2714, 2869, 2969
BseMI GCAATG 3 cut(s) 2575, 2888, 2950
BseMII CTCAG 8 cut(s) 386, 538, 791, 1057, 1136, 1706, 1712, 2221
BseNI ACTGG 7 cut(s) 334, 580, 943, 1198, 1302, 1546, 1873
BseRI GAGGAG 1 cut(s) 1119
BseSI GKGCMC 1 cut(s) 1659
BseXI GCAGC 2 cut(s) 2026, 2409
BseYI CCCAGC 1 cut(s) 667
BshFI GGCC 4 cut(s) 1327, 2797, 2962, 2988
BshNI GGYRCC 3 cut(s) 1469, 1656, 2310
BsiHKAI GWGCWC 5 cut(s) 80, 801, 1795, 1884, 2296
BsiSI CCGG 4 cut(s) 515, 846, 1251, 2970
BslI CCNNNNNNNGG 9 cut(s) 110, 432, 1146, 1415, 1666, 1847, 2714, 2869, 2969
BsmAI GTCTC 4 cut(s) 392, 938, 1262, 3047
BsmBI CGTCTC 1 cut(s) 392
BsmI GAATGC 4 cut(s) 2291, 2829, 3020, 3075
BsnI GGCC 4 cut(s) 1327, 2797, 2962, 2988
Bso31I GGTCTC 2 cut(s) 938, 3047
Bsp119I TTCGAA 3 cut(s) 964, 996, 2267
Bsp1286I GDGCHC 6 cut(s) 80, 801, 1659, 1795, 1884, 2296
Bsp13I TCCGGA 1 cut(s) 514
Bsp1407I TGTACA 1 cut(s) 461
Bsp143I GATC 6 cut(s) 124, 166, 481, 517, 2554, 3005
Bsp19I CCATGG 1 cut(s) 2847
BspACI CCGC 4 cut(s) 849, 2314, 2585, 2673
BspANI GGCC 4 cut(s) 1327, 2797, 2962, 2988
BspCNI CTCAG 8 cut(s) 385, 537, 790, 1056, 1137, 1707, 1711, 2220
BspEI TCCGGA 1 cut(s) 514
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 7 cut(s) 292, 580, 1165, 1471, 1658, 2312, 2689
BspMAI CTGCAG 1 cut(s) 215
BspMI ACCTGC 2 cut(s) 1668, 1936
BspPI GGATC 2 cut(s) 161, 525
BspQI GCTCTTC 1 cut(s) 1376
BspT104I TTCGAA 3 cut(s) 964, 996, 2267
BspT107I GGYRCC 3 cut(s) 1469, 1656, 2310
BspTI CTTAAG 1 cut(s) 2324
BspTNI GGTCTC 2 cut(s) 938, 3047
BsrDI GCAATG 3 cut(s) 2575, 2888, 2950
BsrFI RCCGGY 1 cut(s) 845
BsrGI TGTACA 1 cut(s) 461
BsrI ACTGG 7 cut(s) 334, 580, 943, 1198, 1302, 1546, 1873
BssAI RCCGGY 1 cut(s) 845
BssECI CCNNGG 3 cut(s) 1342, 1633, 2847
BssMI GATC 6 cut(s) 124, 166, 481, 517, 2554, 3005
BssNAI GTATAC 1 cut(s) 2194
BssNI GRCGYC 2 cut(s) 225, 673
BssT1I CCWWGG 2 cut(s) 1342, 2847
Bst1107I GTATAC 1 cut(s) 2194
Bst2UI CCWGG 2 cut(s) 1052, 2897
Bst4CI ACNGT 6 cut(s) 461, 547, 772, 1091, 2528, 2864
Bst6I CTCTTC 5 cut(s) 244, 828, 1376, 1722, 2264
BstACI GRCGYC 2 cut(s) 225, 673
BstAFI CTTAAG 1 cut(s) 2324
BstAUI TGTACA 1 cut(s) 461
BstBI TTCGAA 3 cut(s) 964, 996, 2267
BstC8I GCNNGC 6 cut(s) 273, 289, 398, 847, 1763, 2623
BstDSI CCRYGG 1 cut(s) 2847
BstF5I GGATG 5 cut(s) 582, 1334, 1384, 2425, 2729
BstHHI GCGC 2 cut(s) 396, 3075
BstKTI GATC 6 cut(s) 127, 169, 484, 520, 2557, 3008
BstMAI GTCTC 4 cut(s) 392, 938, 1262, 3047
BstMBI GATC 6 cut(s) 124, 166, 481, 517, 2554, 3005
BstMWI GCNNNNNNNGC 4 cut(s) 231, 689, 796, 878
BstNI CCWGG 2 cut(s) 1052, 2897
BstNSI RCATGY 3 cut(s) 234, 415, 1935
BstSCI CCNGG 3 cut(s) 1050, 2895, 2969
BstSFI CTRYAG 4 cut(s) 211, 306, 2752, 2799
BstSLI GKGCMC 1 cut(s) 1659
BstV1I GCAGC 2 cut(s) 2026, 2409
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BstZ17I GTATAC 1 cut(s) 2194
Bsu36I CCTNAGG 1 cut(s) 372
BsuRI GGCC 4 cut(s) 1327, 2797, 2962, 2988
BtgI CCRYGG 1 cut(s) 2847
BtsCI GGATG 5 cut(s) 582, 1334, 1384, 2425, 2729
BtsIMutI CAGTG 9 cut(s) 159, 327, 457, 573, 768, 936, 1365, 1690, 3033
BveI ACCTGC 2 cut(s) 1668, 1936
Cac8I GCNNGC 6 cut(s) 273, 289, 398, 847, 1763, 2623
CaiI CAGNNNCTG 1 cut(s) 872
CciI TCATGA 1 cut(s) 180
CfoI GCGC 2 cut(s) 396, 3075
Cfr10I RCCGGY 1 cut(s) 845
Cfr13I GGNCC 2 cut(s) 1325, 2072
CseI GACGC 2 cut(s) 214, 662
Csp6I GTAC 4 cut(s) 462, 1062, 1574, 2951
CviQI GTAC 4 cut(s) 462, 1062, 1574, 2951
DpnI GATC 6 cut(s) 126, 168, 483, 519, 2556, 3007
DpnII GATC 6 cut(s) 124, 166, 481, 517, 2554, 3005
DraIII CACNNNGTG 1 cut(s) 3068
Eam1104I CTCTTC 5 cut(s) 244, 828, 1376, 1722, 2264
EarI CTCTTC 5 cut(s) 244, 828, 1376, 1722, 2264
Ecl136II GAGCTC 3 cut(s) 799, 1793, 2294
Eco130I CCWWGG 2 cut(s) 1342, 2847
Eco147I AGGCCT 2 cut(s) 2797, 2988
Eco24I GRGCYC 3 cut(s) 801, 1795, 2296
Eco31I GGTCTC 2 cut(s) 938, 3047
Eco32I GATATC 1 cut(s) 2749
Eco47I GGWCC 1 cut(s) 2072
Eco53kI GAGCTC 3 cut(s) 799, 1793, 2294
Eco57I CTGAAG 3 cut(s) 183, 1341, 1578
Eco81I CCTNAGG 1 cut(s) 372
EcoICRI GAGCTC 3 cut(s) 799, 1793, 2294
EcoRI GAATTC 2 cut(s) 1679, 1908
EcoRII CCWGG 2 cut(s) 1050, 2895
EcoRV GATATC 1 cut(s) 2749
EcoT14I CCWWGG 2 cut(s) 1342, 2847
EcoT22I ATGCAT 2 cut(s) 74, 207
EcoT38I GRGCYC 3 cut(s) 801, 1795, 2296
ErhI CCWWGG 2 cut(s) 1342, 2847
Esp3I CGTCTC 1 cut(s) 392
FalI AAGNNNNNCTT 2 cut(s) 2101, 2133
FblI GTMKAC 1 cut(s) 2193
Fnu4HI GCNGC 2 cut(s) 2040, 2423
FokI GGATG 5 cut(s) 569, 1321, 1391, 2412, 2736
FriOI GRGCYC 3 cut(s) 801, 1795, 2296
Fsp4HI GCNGC 2 cut(s) 2040, 2423
GlaI GCGC 2 cut(s) 395, 3074
GluI GCNGC 2 cut(s) 2040, 2423
GsaI CCCAGC 1 cut(s) 671
GsuI CTGGAG 2 cut(s) 854, 2691
HaeIII GGCC 4 cut(s) 1327, 2797, 2962, 2988
HapII CCGG 4 cut(s) 515, 846, 1251, 2970
HgaI GACGC 2 cut(s) 214, 662
HhaI GCGC 2 cut(s) 396, 3075
Hin1I GRCGYC 2 cut(s) 225, 673
Hin6I GCGC 2 cut(s) 394, 3073
HinP1I GCGC 2 cut(s) 394, 3073
HincII GTYRAC 3 cut(s) 856, 2139, 2881
HindII GTYRAC 3 cut(s) 856, 2139, 2881
HindIII AAGCTT 3 cut(s) 1277, 1763, 2623
HpaII CCGG 4 cut(s) 515, 846, 1251, 2970
HphI GGTGA 7 cut(s) 374, 1628, 1844, 2618, 2825, 3054, 3145
HpyAV CCTTC 9 cut(s) 59, 741, 960, 1286, 1664, 1841, 2091, 2258, 2585
HpyCH4III ACNGT 6 cut(s) 461, 547, 772, 1091, 2528, 2864
HpyCH4IV ACGT 3 cut(s) 589, 1237, 2949
HpyF10VI GCNNNNNNNGC 4 cut(s) 231, 689, 796, 878
HpySE526I ACGT 3 cut(s) 589, 1237, 2949
Hsp92I GRCGYC 2 cut(s) 225, 673
HspAI GCGC 2 cut(s) 394, 3073
Kpn2I TCCGGA 1 cut(s) 514
KroI GCCGGC 1 cut(s) 845
KroNI GCCGGC 1 cut(s) 847
Kzo9I GATC 6 cut(s) 124, 166, 481, 517, 2554, 3005
LguI GCTCTTC 1 cut(s) 1376
LmnI GCTCC 9 cut(s) 296, 494, 796, 804, 869, 1163, 2261, 2898, 3056
Lsp1109I GCAGC 2 cut(s) 2026, 2409
LweI GCATC 6 cut(s) 890, 1255, 2434, 2572, 2648, 3021
MaeII ACGT 3 cut(s) 589, 1237, 2949
MalI GATC 6 cut(s) 126, 168, 483, 519, 2556, 3007
MboI GATC 6 cut(s) 124, 166, 481, 517, 2554, 3005
MfeI CAATTG 2 cut(s) 2004, 2490
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 6 cut(s) 80, 801, 1659, 1795, 1884, 2296
MlyI GAGTC 5 cut(s) 261, 814, 1420, 2144, 2408
MmeI TCCRAC 5 cut(s) 197, 467, 542, 572, 1713
Mph1103I ATGCAT 2 cut(s) 74, 207
MroI TCCGGA 1 cut(s) 514
MroNI GCCGGC 1 cut(s) 845
MroXI GAANNNNTTC 5 cut(s) 604, 960, 1855, 1920, 2273
MslI CAYNNNNRTG 4 cut(s) 815, 2604, 2846, 3080
MspA1I CMGCKG 1 cut(s) 469
MspCI CTTAAG 1 cut(s) 2324
MspI CCGG 4 cut(s) 515, 846, 1251, 2970
MspR9I CCNGG 3 cut(s) 1052, 2897, 2971
MunI CAATTG 2 cut(s) 2004, 2490
Mva1269I GAATGC 4 cut(s) 2291, 2829, 3020, 3075
MvaI CCWGG 2 cut(s) 1052, 2897
MwoI GCNNNNNNNGC 4 cut(s) 231, 689, 796, 878
NaeI GCCGGC 1 cut(s) 847
NciI CCSGG 1 cut(s) 2971
NcoI CCATGG 1 cut(s) 2847
NdeII GATC 6 cut(s) 124, 166, 481, 517, 2554, 3005
NgoMIV GCCGGC 1 cut(s) 845
NlaIV GGNNCC 7 cut(s) 292, 580, 1165, 1471, 1658, 2312, 2689
NmeAIII GCCGAG 1 cut(s) 1614
NmuCI GTSAC 6 cut(s) 226, 256, 1028, 1360, 2606, 3151
NsiI ATGCAT 2 cut(s) 74, 207
NspI RCATGY 3 cut(s) 234, 415, 1935
NspV TTCGAA 3 cut(s) 964, 996, 2267
PagI TCATGA 1 cut(s) 180
PaqCI CACCTGC 1 cut(s) 1668
PceI AGGCCT 2 cut(s) 2797, 2988
PciI ACATGT 1 cut(s) 411
PciSI GCTCTTC 1 cut(s) 1376
PctI GAATGC 4 cut(s) 2291, 2829, 3020, 3075
PdiI GCCGGC 1 cut(s) 847
PdmI GAANNNNTTC 5 cut(s) 604, 960, 1855, 1920, 2273
PflFI GACNNNGTC 3 cut(s) 1522, 2668, 2864
PflMI CCANNNNNTGG 2 cut(s) 110, 2714
PfoI TCCNGGA 1 cut(s) 2895
PkrI GCNGC 2 cut(s) 2041, 2424
PleI GAGTC 5 cut(s) 260, 814, 1419, 2143, 2408
PpsI GAGTC 5 cut(s) 260, 814, 1419, 2143, 2408
PscI ACATGT 1 cut(s) 411
PshBI ATTAAT 1 cut(s) 1436
Psp124BI GAGCTC 3 cut(s) 801, 1795, 2296
Psp6I CCWGG 2 cut(s) 1050, 2895
PspFI CCCAGC 1 cut(s) 667
PspGI CCWGG 2 cut(s) 1050, 2895
PspN4I GGNNCC 7 cut(s) 292, 580, 1165, 1471, 1658, 2312, 2689
PspPI GGNCC 2 cut(s) 1325, 2072
PstI CTGCAG 1 cut(s) 215
PstNI CAGNNNCTG 1 cut(s) 872
PsuI RGATCY 1 cut(s) 166
PsyI GACNNNGTC 3 cut(s) 1522, 2668, 2864
PvuII CAGCTG 1 cut(s) 469
RsaI GTAC 4 cut(s) 463, 1063, 1575, 2952
RsaNI GTAC 4 cut(s) 462, 1062, 1574, 2951
RseI CAYNNNNRTG 4 cut(s) 815, 2604, 2846, 3080
SacI GAGCTC 3 cut(s) 801, 1795, 2296
SapI GCTCTTC 1 cut(s) 1376
SatI GCNGC 2 cut(s) 2040, 2423
Sau3AI GATC 6 cut(s) 124, 166, 481, 517, 2554, 3005
Sau96I GGNCC 2 cut(s) 1325, 2072
SchI GAGTC 5 cut(s) 261, 814, 1420, 2144, 2408
ScrFI CCNGG 3 cut(s) 1052, 2897, 2971
SduI GDGCHC 6 cut(s) 80, 801, 1659, 1795, 1884, 2296
SfaNI GCATC 6 cut(s) 890, 1255, 2434, 2572, 2648, 3021
SfcI CTRYAG 4 cut(s) 211, 306, 2752, 2799
SfuI TTCGAA 3 cut(s) 964, 996, 2267
SinI GGWCC 1 cut(s) 2072
SmiMI CAYNNNNRTG 4 cut(s) 815, 2604, 2846, 3080
SmlI CTYRAG 3 cut(s) 1070, 1796, 2324
SmoI CTYRAG 3 cut(s) 1070, 1796, 2324
SpeI ACTAGT 1 cut(s) 1997
SseBI AGGCCT 2 cut(s) 2797, 2988
SsiI CCGC 4 cut(s) 849, 2314, 2585, 2673
SspI AATATT 2 cut(s) 748, 2485
SstI GAGCTC 3 cut(s) 801, 1795, 2296
StuI AGGCCT 2 cut(s) 2797, 2988
StyD4I CCNGG 3 cut(s) 1050, 2895, 2969
StyI CCWWGG 2 cut(s) 1342, 2847
TaaI ACNGT 6 cut(s) 461, 547, 772, 1091, 2528, 2864
TaiI ACGT 3 cut(s) 592, 1240, 2952
TaqI TCGA 9 cut(s) 509, 964, 996, 1508, 1789, 1958, 2063, 2267, 2580
TatI WGTACW 2 cut(s) 461, 1061
TscAI CASTG 9 cut(s) 166, 334, 464, 580, 775, 943, 1365, 1690, 3033
TseFI GTSAC 6 cut(s) 226, 256, 1028, 1360, 2606, 3151
TseI GCWGC 2 cut(s) 2039, 2422
Tsp45I GTSAC 6 cut(s) 226, 256, 1028, 1360, 2606, 3151
TspGWI ACGGA 1 cut(s) 1867
TspRI CASTG 9 cut(s) 166, 334, 464, 580, 775, 943, 1365, 1690, 3033
Tth111I GACNNNGTC 3 cut(s) 1522, 2668, 2864
Van91I CCANNNNNTGG 2 cut(s) 110, 2714
Vha464I CTTAAG 1 cut(s) 2324
VpaK11BI GGWCC 1 cut(s) 2072
VspI ATTAAT 1 cut(s) 1436
XbaI TCTAGA 4 cut(s) 85, 139, 899, 2410
XceI RCATGY 3 cut(s) 234, 415, 1935
XmaJI CCTAGG 1 cut(s) 1342
XmiI GTMKAC 1 cut(s) 2193
XmnI GAANNNNTTC 5 cut(s) 604, 960, 1855, 1920, 2273
Zsp2I ATGCAT 2 cut(s) 74, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.