MD04G1157700.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
24588054 .. 24589146
1093 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1157700.v1.1.491

Sequence Viewer

Length: 897 bp
ATGCTGAAAAAGTCAAGAGATAGACTTGCAACTTCACGTTCATATAAGGATTGGAAATCAGGTGTCTCCTACTCACAACTCGTTGAATCAACTAACGGGTTCTCTGCGGATAATCTTATTGGTTTGGGAAGTTTTGGTTCAGTTTATAAAGGGGTAATTCCTAGTGATGGAACAATAGTTGCTGTTAAGGTACTAAACCTTCAACAACAAGGAGCTTCCAAGAGTTTCATAGATGAATGCAAAGCTTTAAGGAGTATAAGGCATCGTAATCTTCTCAAGATCATAACTGCATGCTCGAGCTTTGATAACCAGGGCAAGGACTTCAAAAGTCTAGTTTTCAAGTTCATGGCAAATGGAAGTCTAGACTCAATGTTGTATCCAAGATATGAGGAGGAATCTCCAAGCAAAAGAATGAGTTTTATGCAAAGATTGAACATCGCCATTGATGTTGCTTCTGCGTTAGATTATCTCCACCACCATTGTGAAACGGCCATTGTTCATTGTGATCTAAAGCCGAGCAACGTACTACTTGATGAAGATATGGTAGCCCATGTTGGGGATTTTGGTTTGGCAAGGTTCCTTTTCGAAACATCAAATGATCCCTCATTCAGTCAAACAATGTCATCTCAGCTAAAGGGTTCTATAGGCTACATTCCTCCAGAGTACGGCACAGGAGGCCAAGTTTCCATACTTGGAGATGTTTACAGCTATGGGATACTATTGCTGGAAATGTTCACAAGAAAAAGACCTACCGTTGACATGTTTAAAGGCGGTCTAAGCATTTACCAATTTGTAGCCATGGCTTTGCCTGACCATTTCATGGACGTTGTTGACAATTCAATTATCCTCGACCTCGAAACAGATGGTGATATCAACAATGACATAGTGCGAGAATGA

Protein Analysis

299

Amino Acids

33.14

Weight (kDa)

5.67

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 36 - 251 2.6e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 37 - 253 2e-38 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
AccB7I CCANNNNNTGG 1 cut(s) 820
AciI CCGC 2 cut(s) 107, 771
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 1 cut(s) 489
AfaI GTAC 3 cut(s) 192, 525, 665
AfiI CCNNNNNNNGG 6 cut(s) 167, 316, 555, 556, 665, 820
AflIII ACRYGT 1 cut(s) 759
AgsI TTSAA 6 cut(s) 86, 203, 325, 340, 433, 840
AjnI CCWGG 1 cut(s) 309
AleI CACNNNNGTG 1 cut(s) 480
AluBI AGCT 5 cut(s) 215, 245, 300, 631, 708
AluI AGCT 5 cut(s) 215, 245, 300, 631, 708
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 593
Ama87I CYCGRG 1 cut(s) 295
AoxI GGCC 2 cut(s) 489, 676
AsuHPI GGTGA 1 cut(s) 878
AsuII TTCGAA 1 cut(s) 585
AvaI CYCGRG 1 cut(s) 295
BarI GAAGNNNNNNTAC 2 cut(s) 183, 215
BccI CCATC 2 cut(s) 161, 857
BceAI ACGGC 2 cut(s) 504, 682
BciT130I CCWGG 1 cut(s) 311
BciVI GTATCC 2 cut(s) 387, 708
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 3 cut(s) 162, 332, 362
BfmI CTRYAG 1 cut(s) 642
BfuI GTATCC 2 cut(s) 387, 708
Bme1390I CCNGG 1 cut(s) 311
BmeT110I CYCGRG 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 578
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 1 cut(s) 271
BpmI CTGGAG 1 cut(s) 642
Bpu14I TTCGAA 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 310, 798
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bsc4I CCNNNNNNNGG 6 cut(s) 167, 316, 555, 556, 665, 820
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 2 cut(s) 310, 798
BseLI CCNNNNNNNGG 6 cut(s) 167, 316, 555, 556, 665, 820
BseMII CTCAG 1 cut(s) 641
BseRI GAGGAG 1 cut(s) 404
BshFI GGCC 2 cut(s) 491, 678
BsiHKCI CYCGRG 1 cut(s) 295
BslI CCNNNNNNNGG 6 cut(s) 167, 316, 555, 556, 665, 820
BsmAI GTCTC 1 cut(s) 70
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 2 cut(s) 491, 678
BsoBI CYCGRG 1 cut(s) 295
Bsp119I TTCGAA 1 cut(s) 585
Bsp143I GATC 3 cut(s) 279, 505, 598
Bsp19I CCATGG 1 cut(s) 798
BspACI CCGC 2 cut(s) 107, 771
BspANI GGCC 2 cut(s) 491, 678
BspCNI CTCAG 1 cut(s) 640
BspLI GGNNCC 1 cut(s) 578
BspPI GGATC 1 cut(s) 593
BspT104I TTCGAA 1 cut(s) 585
BssECI CCNNGG 2 cut(s) 310, 798
BssMI GATC 3 cut(s) 279, 505, 598
BssT1I CCWWGG 1 cut(s) 798
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 1 cut(s) 754
BstBI TTCGAA 1 cut(s) 585
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 2 cut(s) 627, 776
BstDSI CCRYGG 1 cut(s) 798
BstKTI GATC 3 cut(s) 282, 508, 601
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 3 cut(s) 279, 505, 598
BstMWI GCNNNNNNNGC 2 cut(s) 675, 777
BstNI CCWGG 1 cut(s) 311
BstNSI RCATGY 2 cut(s) 294, 763
BstSCI CCNGG 1 cut(s) 309
BstSFI CTRYAG 1 cut(s) 642
BsuI GTATCC 2 cut(s) 387, 708
BsuRI GGCC 2 cut(s) 491, 678
BtgI CCRYGG 1 cut(s) 798
BtgZI GCGATG 1 cut(s) 421
Cac8I GCNNGC 1 cut(s) 292
Csp6I GTAC 3 cut(s) 191, 524, 664
CspCI CAANNNNNGTGG 2 cut(s) 461, 496
CviAII CATG 6 cut(s) 291, 346, 551, 760, 799, 820
CviQI GTAC 3 cut(s) 191, 524, 664
DdeI CTNAG 2 cut(s) 627, 776
DpnI GATC 3 cut(s) 281, 507, 600
DpnII GATC 3 cut(s) 279, 505, 598
DraI TTTAAA 1 cut(s) 766
EaeI YGGCCR 1 cut(s) 489
Eco130I CCWWGG 1 cut(s) 798
Eco32I GATATC 1 cut(s) 871
Eco88I CYCGRG 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 309
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 1 cut(s) 798
ErhI CCWWGG 1 cut(s) 798
FaeI CATG 6 cut(s) 294, 349, 554, 763, 802, 823
FatI CATG 6 cut(s) 290, 345, 550, 759, 798, 819
FspBI CTAG 3 cut(s) 162, 332, 362
GsuI CTGGAG 1 cut(s) 642
HaeIII GGCC 2 cut(s) 491, 678
Hin1II CATG 6 cut(s) 294, 349, 554, 763, 802, 823
HincII GTYRAC 2 cut(s) 757, 832
HindII GTYRAC 2 cut(s) 757, 832
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 3 cut(s) 86, 365, 395
HphI GGTGA 1 cut(s) 878
Hpy166II GTNNAC 4 cut(s) 703, 735, 757, 832
Hpy188III TCNNGA 4 cut(s) 15, 277, 362, 659
Hpy8I GTNNAC 4 cut(s) 703, 735, 757, 832
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 754
HpyCH4IV ACGT 3 cut(s) 37, 522, 825
HpyCH4V TGCA 4 cut(s) 29, 240, 290, 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 675, 777
HpyF3I CTNAG 2 cut(s) 627, 776
HpySE526I ACGT 3 cut(s) 37, 522, 825
Hsp92II CATG 6 cut(s) 294, 349, 554, 763, 802, 823
Kzo9I GATC 3 cut(s) 279, 505, 598
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 7 cut(s) 45, 296, 323, 657, 672, 710, 822
LweI GCATC 1 cut(s) 271
MaeI CTAG 3 cut(s) 162, 332, 362
MaeII ACGT 3 cut(s) 37, 522, 825
MalI GATC 3 cut(s) 281, 507, 600
MboI GATC 3 cut(s) 279, 505, 598
MboII GAAGA 2 cut(s) 263, 548
MluCI AATT 4 cut(s) 156, 788, 835, 840
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 7 cut(s) 382, 385, 613, 666, 668, 857, 863
MseI TTAA 3 cut(s) 186, 248, 765
MslI CAYNNNNRTG 1 cut(s) 480
MspR9I CCNGG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 1 cut(s) 311
MwoI GCNNNNNNNGC 2 cut(s) 675, 777
NcoI CCATGG 1 cut(s) 798
NdeII GATC 3 cut(s) 279, 505, 598
NlaIII CATG 6 cut(s) 294, 349, 554, 763, 802, 823
NlaIV GGNNCC 1 cut(s) 578
NmeAIII GCCGAG 1 cut(s) 540
NspI RCATGY 2 cut(s) 294, 763
NspV TTCGAA 1 cut(s) 585
OliI CACNNNNGTG 1 cut(s) 480
PaeI GCATGC 1 cut(s) 294
PaeR7I CTCGAG 1 cut(s) 295
PciI ACATGT 1 cut(s) 759
PctI GAATGC 1 cut(s) 242
PfeI GAWTC 2 cut(s) 86, 395
PflMI CCANNNNNTGG 1 cut(s) 820
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
PscI ACATGT 1 cut(s) 759
PsiI TTATAA 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 578
PspXI VCTCGAGB 1 cut(s) 295
RsaI GTAC 3 cut(s) 192, 525, 665
RsaNI GTAC 3 cut(s) 191, 524, 664
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 3 cut(s) 186, 248, 765
Sau3AI GATC 3 cut(s) 279, 505, 598
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 311
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 642
Sfr274I CTCGAG 1 cut(s) 295
SfuI TTCGAA 1 cut(s) 585
SlaI CTCGAG 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 2 cut(s) 275, 295
SmoI CTYRAG 2 cut(s) 275, 295
SphI GCATGC 1 cut(s) 294
Sse9I AATT 4 cut(s) 156, 788, 835, 840
SsiI CCGC 2 cut(s) 107, 771
SspMI CTAG 3 cut(s) 162, 332, 362
StyD4I CCNGG 1 cut(s) 309
StyI CCWWGG 1 cut(s) 798
TaaI ACNGT 1 cut(s) 754
TaiI ACGT 3 cut(s) 40, 525, 828
TaqI TCGA 4 cut(s) 296, 585, 849, 855
TasI AATT 4 cut(s) 156, 788, 835, 840
TfiI GAWTC 2 cut(s) 86, 395
Tru1I TTAA 3 cut(s) 186, 248, 765
Tru9I TTAA 3 cut(s) 186, 248, 765
TspDTI ATGAA 7 cut(s) 30, 217, 249, 334, 488, 549, 808
Van91I CCANNNNNTGG 1 cut(s) 820
XbaI TCTAGA 1 cut(s) 361
XceI RCATGY 2 cut(s) 294, 763
XhoI CTCGAG 1 cut(s) 295
XspI CTAG 3 cut(s) 162, 332, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.