RLG00000019554

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
53471404 .. 53472301
898 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019554

Sequence Viewer

Length: 780 bp
ATGTCAGGTAATTTGGTACACGGAAGCATCCCTATCGGCATTGGAAATCTTGTAAACTTGACCACGCTGGAACTAGGAGACAACAATTTGGGTGGTAGTCTTCCTGAAGAAATTGGGAAGCTTCAGAAGTTAGAGGGACTGCTTTTGAATCTTAACAAATTTTCTAGGCCAATCCCATCCTCCTTGGGTAACTTGACTTCACTAACAAAGCTATTCATGGAGGGCAATAGGTTTGAGGGAAGTATACCGCCAAGTCTTGGAAGCTGCAAAAATCTACTAATACTTGACCTTTCCAATAATAGTCTAAATGGCACAATACCTAAAGAGGTAATTGCTGATTCATCCCTTTCAATTTCATCTAACAATTACTTGACTGGTTCACTCCCAGATGAAGTGGGTAAGTTGGTGGAACTTACAGAGCTAGATGTATCAGGAAACAAGTTATCAGTAGAGATTCCCACAACCCTTAGCAATTGTGTTAGCTTGGAATGCCTTCATTTGGAAGATAATGTATTTGAAGGAACAATTCCACATTCTTTTAAAGATTTAAGAGGCTTGGAGGAAATAGACGTATCGGGAAATCACTTATTTGTTCTCGGAAATGATAAGCTCTGTGGTGGCATCCTAGAATTACTTCTGCCTGCATGTTCCAGCAGAAAGCCTCAATCATCTCTAGGAGTACTTGCCGCAGAAGTGATAATCCCTGTAAGTTGTGGAATTGCATTAGTAATTGCCTTTTGTTGCTGCATTGCTGGACGTTCAATGGCGAAAAGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

260

Amino Acids

27.32

Weight (kDa)

4.95

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 9 - 95 1.1e-08 Leucine-rich repeat region
LRR_14 PF23598 83 - 191 1.3e-07 Leucine-rich repeat region
LRR_8 PF13855 138 - 196 7.3e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 257
AccI GTMKAC 1 cut(s) 244
AciI CCGC 2 cut(s) 248, 687
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 2 cut(s) 107, 126
AfaI GTAC 2 cut(s) 18, 681
AfiI CCNNNNNNNGG 2 cut(s) 257, 499
AgsI TTSAA 4 cut(s) 148, 351, 518, 762
AluBI AGCT 6 cut(s) 121, 211, 264, 421, 483, 610
AluI AGCT 6 cut(s) 121, 211, 264, 421, 483, 610
Alw26I GTCTC 1 cut(s) 72
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 2 cut(s) 264, 744
ApoI RAATTY 1 cut(s) 158
Asp700I GAANNNNTTC 2 cut(s) 492, 633
BarI GAAGNNNNNNTAC 2 cut(s) 181, 213
BbsI GAAGAC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 251, 731
BccI CCATC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 5 cut(s) 74, 165, 422, 626, 674
BisI GCNGC 3 cut(s) 265, 687, 745
BlsI GCNGC 3 cut(s) 266, 688, 746
BmcAI AGTACT 1 cut(s) 681
BmsI GCATC 2 cut(s) 36, 630
BpiI GAAGAC 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 499
Bse1I ACTGG 1 cut(s) 379
Bse3DI GCAATG 1 cut(s) 747
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 4 cut(s) 27, 176, 341, 621
BseLI CCNNNNNNNGG 2 cut(s) 257, 499
BseMI GCAATG 1 cut(s) 747
BseNI ACTGG 1 cut(s) 379
BseXI GCAGC 2 cut(s) 251, 731
BshFI GGCC 1 cut(s) 169
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 257, 499
BsmAI GTCTC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 494
BsnI GGCC 1 cut(s) 169
BspACI CCGC 2 cut(s) 248, 687
BspANI GGCC 1 cut(s) 169
BspHI TCATGA 1 cut(s) 776
BsrDI GCAATG 1 cut(s) 747
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 183
BssNAI GTATAC 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 183
Bst1107I GTATAC 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 642
BstDEI CTNAG 1 cut(s) 467
BstF5I GGATG 4 cut(s) 27, 176, 341, 621
BstMAI GTCTC 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 489
BstNSI RCATGY 1 cut(s) 648
BstV1I GCAGC 2 cut(s) 251, 731
BstV2I GAAGAC 1 cut(s) 92
BstZ17I GTATAC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 169
BtsCI GGATG 4 cut(s) 27, 176, 341, 621
Cac8I GCNNGC 1 cut(s) 642
CciI TCATGA 1 cut(s) 776
Csp6I GTAC 2 cut(s) 17, 680
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviAII CATG 3 cut(s) 217, 645, 777
CviJI RGCY 9 cut(s) 121, 169, 211, 264, 421, 483, 555, 610, 661
CviKI_1 RGCY 9 cut(s) 121, 169, 211, 264, 421, 483, 555, 610, 661
CviQI GTAC 2 cut(s) 17, 680
DdeI CTNAG 1 cut(s) 467
DraI TTTAAA 1 cut(s) 541
Eco130I CCWWGG 1 cut(s) 183
Eco57I CTGAAG 2 cut(s) 107, 126
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 3 cut(s) 220, 648, 780
FaiI YATR 4 cut(s) 218, 245, 646, 778
FaqI GGGAC 1 cut(s) 150
FatI CATG 3 cut(s) 216, 644, 776
FblI GTMKAC 1 cut(s) 244
Fnu4HI GCNGC 3 cut(s) 265, 687, 745
FokI GGATG 4 cut(s) 14, 163, 328, 608
Fsp4HI GCNGC 3 cut(s) 265, 687, 745
FspBI CTAG 5 cut(s) 74, 165, 422, 626, 674
GluI GCNGC 3 cut(s) 265, 687, 745
HaeIII GGCC 1 cut(s) 169
Hin1II CATG 3 cut(s) 220, 648, 780
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 3 cut(s) 148, 338, 454
Hpy166II GTNNAC 4 cut(s) 19, 55, 245, 380
Hpy188I TCNGA 2 cut(s) 126, 599
Hpy188III TCNNGA 4 cut(s) 104, 432, 576, 777
Hpy8I GTNNAC 4 cut(s) 19, 55, 245, 380
HpyAV CCTTC 2 cut(s) 503, 512
HpyCH4IV ACGT 2 cut(s) 570, 757
HpyCH4V TGCA 4 cut(s) 267, 644, 722, 747
HpyF10VI GCNNNNNNNGC 1 cut(s) 489
HpyF3I CTNAG 1 cut(s) 467
HpySE526I ACGT 2 cut(s) 570, 757
Hsp92II CATG 3 cut(s) 220, 648, 780
LpnPI CCDG 9 cut(s) 53, 117, 360, 399, 417, 654, 664, 717, 738
Lsp1109I GCAGC 2 cut(s) 251, 731
LweI GCATC 2 cut(s) 36, 630
MaeI CTAG 5 cut(s) 74, 165, 422, 626, 674
MaeII ACGT 2 cut(s) 570, 757
MaeIII GTNAC 1 cut(s) 188
MboII GAAGA 3 cut(s) 92, 119, 515
MfeI CAATTG 1 cut(s) 472
MnlI CCTC 8 cut(s) 127, 190, 214, 229, 319, 545, 553, 672
MroXI GAANNNNTTC 2 cut(s) 492, 633
MseI TTAA 3 cut(s) 153, 540, 548
MunI CAATTG 1 cut(s) 472
Mva1269I GAATGC 1 cut(s) 494
MwoI GCNNNNNNNGC 1 cut(s) 489
NlaIII CATG 3 cut(s) 220, 648, 780
NspI RCATGY 1 cut(s) 648
PagI TCATGA 1 cut(s) 776
PctI GAATGC 1 cut(s) 494
PdmI GAANNNNTTC 2 cut(s) 492, 633
PfeI GAWTC 3 cut(s) 148, 338, 454
PflMI CCANNNNNTGG 1 cut(s) 257
PkrI GCNGC 3 cut(s) 266, 688, 746
RsaI GTAC 2 cut(s) 18, 681
RsaNI GTAC 2 cut(s) 17, 680
SaqAI TTAA 3 cut(s) 153, 540, 548
SatI GCNGC 3 cut(s) 265, 687, 745
ScaI AGTACT 1 cut(s) 681
SfaNI GCATC 2 cut(s) 36, 630
SsiI CCGC 2 cut(s) 248, 687
SspMI CTAG 5 cut(s) 74, 165, 422, 626, 674
StyI CCWWGG 1 cut(s) 183
TaiI ACGT 2 cut(s) 573, 760
TatI WGTACW 1 cut(s) 679
TauI GCSGC 1 cut(s) 689
TfiI GAWTC 3 cut(s) 148, 338, 454
Tru1I TTAA 3 cut(s) 153, 540, 548
Tru9I TTAA 3 cut(s) 153, 540, 548
TseI GCWGC 2 cut(s) 264, 744
TspDTI ATGAA 5 cut(s) 205, 330, 345, 405, 485
TspGWI ACGGA 1 cut(s) 36
Van91I CCANNNNNTGG 1 cut(s) 257
XapI RAATTY 1 cut(s) 158
XceI RCATGY 1 cut(s) 648
XmiI GTMKAC 1 cut(s) 244
XmnI GAANNNNTTC 2 cut(s) 492, 633
XspI CTAG 5 cut(s) 74, 165, 422, 626, 674
ZrmI AGTACT 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.