Rw3G010400

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
9974723 .. 9978012
3290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G010400.1

Sequence Viewer

Length: 3069 bp
ATGAAGGGGCATTCACTATCAAATTGTAGGTGGTTTTTACACAAATTCCTTCCTGTGTTCATTGTTTTATGCATGAGCACAGGTCTGGAATCTGCAACACTACCAAATTTTGGAAATGAATCTGATCGTCTGGCACTGCTAGACTTCAAGAAAAGAATCACTGAAGATCCTCTCCATATCATGAGCTCATGGAATGAATCCATGCATTTCTGCAGTTGGATAGGCGTCACATGCAACAATTCCACCAGAAGAGTTGTGACCTTGAACTTGCAAGCTCAAAAGTTGGCTGGCTCCATACCACCTTCCATAGGGAATCTTACTCATCTCACTGGAATCAACTTGATAAACAACAACTTTTATGGTGAAATTCCTCAGGAAATGGGTCGTCTCTTGCGCCTGCAATATCTCAACATGTCTCAAAACTCCTTCAGTGGGAAAATTCCGACTAATATATCTCACTGTACGCAGCTGACAATGATTGATGTTTTTTCCAATAAATTCATTGGGACAATTCCCAACCAACTCAGTTCATTGTTGAAATTAACTGTGTTACGGATTGGTCGGAACAATCTCACTGGAACCATCCCACGTTGGATTGGGAACTTTTCTTCATTGTTTGCACTTTCTCTTGGTGAAAACAACTTGCAAGGAAGCATACCTGATGAGCTGGGGCGTCTAACTGCTTTGCAGAGATTCATACTTACCTCAAATAATCTTTCTGGTATGATTCCTTCTTCGATATATAACATTTCCTCCATATACTATTTCACTGTTACTCAGAATCAACTGCATGGGGAAATCCCACAAAACATTGGCATTACTCTTCCTAATCTGGAGGTATTTGCTGGAGGTGCCAACAAGTTCACAGGAACTATTCCTGTGTCCTTTTTTACTGGGAAACTCCCTGCTGAAAGTCTTGGGCGTTTGAAAAGGTTAGTTAGACTATACTTTGACTTGAACAGACTGGGAAGTGGTCAAGCTGGTGGCCTGAATTTTCTCAATTTCCTGACTAATTGTACTAGTCTTGAGGTGTTGGGTCTTAGCTATAATCGCTTTGGAGGAGAATTACCAGCATCCATAGCCAACCTTTCTACCCACCTCCCTACTGGTATTGGAAATCTGGTAAACTTGACACTTCTGGGAATTGAACAAAACTACATTGGTGGTCGTCTCCCTGATGTAATTGGGAAGCTTCACAAGTTAGAAGGACTGCATTTGAATCTGAACAGATTTTCAGGGCCAATCCCATTCTCCCTAGGTAACTTGACTTCAGTGACAAGGCTCTTCATGGAGGGGAATAGGTTTCAGGGAAGCATACCTCCAAGTCTTGGGAACTGCAAAAATCTATTGATACTCAACCTTTCTAGTAACAATCTAAATGGCACAATACCTAGAGAGGTAGTGGCGATTAAATCCCTTTCGATTTCTTTGACAATGTCTAACAACTCTTTGACTGGTTCACTGCCATCTGAAGTGGGTGGTTTGGTAAATCTCGCAGAGCTAGACATATCAGGAAACAAATTATCGGGTGAAATCCCCGAAACCCTTGGCAGTTGTATTAGTTTGGAGCGCCTGCTTTTGAAAGGTAATGAATTCAGTGGACATATTCCTCAGTCTATGGAAAAGCTGAGAGGCTTGGAAGAGTTGGATATTTCACACAATAACTTATCTGGCCAGGTTCCTGAATTTGTAGGCAACTTTCGAGCTCTCAAGTATCTCAATCTTTCTCACAATGATTTTGAGGGTGAATTGCCTAAAGAAGGAATCTTTTCAAATGCAACTGGTATCTCAGTGCTCGGAAATGATAAGCTCTGTGGTGGAATTCCAGAATTAGTTCTACCTGCATGTTCCAGCAGAAAGCCTCCTTCATCGAGAGGACTACTTGCCCCAAAAGTGATAATACCTCTAACTAGTGCAATTGCATTAATAATTGCTCTTTCCTGCTTGGTTGCTGCACGTTCAATGATGAAAAAGCCAAGAGACAGACCTCTGACTTCATCTTCTCATAATGATTCATATCCAAGTATCTCTTACTCAGAACTTGTTCAGTCAACTAATGGGTTTTTCTGTGGACAATTGATTGGTTCAGGAAGCTTTGGCTCTGTATACAAAGGATTACTCAGTAGTACTGGAATGGTAGTTGCTGTTAAGGTATTAAACCTTCAACAACAAGGAGCTTCAAAGAGTTTCATTGATGAATGCAGAGCTCTAAGAAGTATAAGGCACCGCAATCTTCTGAAGATCATAACTACCTGCTCAAGCACCGATAATCAGGGTAACAGCTTCAAAAGTCTAATTTTCAATTTCATGGCAAATGGAAGTCTAGATCCTTGGCTGCACGCTAGAGAAGACGACGGATCTCAAAGTAAGAGATTGAGCCTTATCCAAAGGCTCAATATTGCCATTGATGTTGCTTGTGCATTAGATTACCTACACAACGATTGTGAAACATCCATTGTTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTCGATGAGTATATGGTAGCCCATGTTGGTGACTTTGGTTTAGCAAGCTTCCTCTTCGAAGCATCAAATAATCATTCCAAAAGTCAGACCATGTCAGCTAGGCTAAAGGGTTCCATAGGCTACATTCCTCCTGAATATGGCATGGGATGTCAAGTTTCCATTCTGGGAGATATCTATAGCTATGGGATTCTATTGCTAGAAATGTTCACAGGGAAAAGGCCAACGGACGAAATGTTCAAAGATGGTCTAAGCATTCACCAGTTCACAGCCATGGCTTTCCCTGACCGTGTCATGGACATAGTTGACACTTCATTGCTCCTGGAAACAGATGAGGATAAGGATGATGATGATGACAAATACAGCAATGATATACAAGAAAGGCCAATAGCCGGGTATCAAGATATAGGCCTAGTGAAAGCAAGAAGATTGGAGGAATGCTTGGTTTCAGTGATGCAGATTGGTCTCTCATGCTCCACAGTATCACCAAGTGAGCGCATTCTCATGAATGTGGTTGTGAACAAGATGACTGCAATTAGAGATTCCTATCTCAAATTGACCAAGACCAAGTTTGTCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1022

Amino Acids

111.84

Weight (kDa)

7.77

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 40 - 79 1.8e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 125 - 237 1.2e-10 Leucine-rich repeat region
LRR_8 PF13855 180 - 239 3.6e-08 Leucine rich repeat
LRR_14 PF23598 364 - 457 4.2e-07 Leucine-rich repeat region
LRR_14 PF23598 440 - 578 2.2e-08 Leucine-rich repeat region
LRR_8 PF13855 521 - 580 8.3e-08 Leucine rich repeat
PK_Tyr_Ser-Thr PF07714 692 - 910 3e-38 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 692 - 912 5.3e-37 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1849, 2261
AccB1I GGYRCC 2 cut(s) 851, 2223
AccB7I CCANNNNNTGG 2 cut(s) 110, 1328
AccI GTMKAC 1 cut(s) 2106
AciI CCGC 1 cut(s) 2227
AclWI GGATC 3 cut(s) 161, 2321, 2365
AcoI YGGCCR 1 cut(s) 1672
AcsI RAATTY 9 cut(s) 44, 106, 366, 438, 497, 991, 1592, 1685, 1821
AcuI CTGAAG 5 cut(s) 183, 412, 1254, 1491, 2258
AcyI GRCGYC 2 cut(s) 225, 673
AdeI CACNNNGTG 1 cut(s) 2978
AfaI GTAC 3 cut(s) 463, 1018, 2128
AfiI CCNNNNNNNGG 8 cut(s) 110, 308, 432, 1328, 1760, 2627, 2782, 2879
AflIII ACRYGT 1 cut(s) 411
AhlI ACTAGT 2 cut(s) 1019, 1910
AjnI CCWGG 2 cut(s) 1674, 2808
AloI GAACNNNNNNTCC 2 cut(s) 2708, 2740
Alw21I GWGCWC 5 cut(s) 80, 188, 1708, 1797, 2209
Alw26I GTCTC 5 cut(s) 392, 420, 1175, 1974, 2957
AlwI GGATC 3 cut(s) 161, 2321, 2365
AoxI GGCC 6 cut(s) 985, 1238, 1672, 2708, 2870, 2896
ApeKI GCWGC 3 cut(s) 466, 1952, 2335
ApoI RAATTY 9 cut(s) 44, 106, 366, 438, 497, 991, 1592, 1685, 1821
AseI ATTAAT 1 cut(s) 1925
Asp700I GAANNNNTTC 3 cut(s) 1768, 1833, 2043
AspA2I CCTAGG 1 cut(s) 1255
AspLEI GCGC 3 cut(s) 396, 1572, 2985
AspS9I GGNCC 1 cut(s) 1238
AsuC2I CCSGG 1 cut(s) 2881
AsuHPI GGTGA 8 cut(s) 374, 644, 1541, 1757, 2531, 2738, 2964, 3055
AsuII TTCGAA 1 cut(s) 2547
AvrII CCTAGG 1 cut(s) 1255
AxyI CCTNAGG 1 cut(s) 372
BalI TGGCCA 1 cut(s) 1674
BanI GGYRCC 2 cut(s) 851, 2223
BanII GRGCYC 3 cut(s) 188, 1708, 2209
BarI GAAGNNNNNNTAC 6 cut(s) 715, 747, 1252, 1284, 2145, 2177
BbsI GAAGAC 1 cut(s) 2355
Bbv12I GWGCWC 5 cut(s) 80, 188, 1708, 1797, 2209
BbvI GCAGC 3 cut(s) 478, 1939, 2322
BccI CCATC 3 cut(s) 590, 1474, 2726
BciT130I CCWGG 2 cut(s) 1676, 2810
BcnI CCSGG 1 cut(s) 2881
BcoDI GTCTC 5 cut(s) 392, 420, 1175, 1974, 2957
BcuI ACTAGT 2 cut(s) 1019, 1910
BfmI CTRYAG 2 cut(s) 211, 2665
BfoI RGCGCY 1 cut(s) 1573
BfuAI ACCTGC 2 cut(s) 1849, 2261
BisI GCNGC 3 cut(s) 467, 1953, 2336
BlnI CCTAGG 1 cut(s) 1255
BlsI GCNGC 3 cut(s) 468, 1954, 2337
BmcAI AGTACT 1 cut(s) 2128
Bme1390I CCNGG 3 cut(s) 1676, 2810, 2881
BmgT120I GGNCC 1 cut(s) 1238
BmiI GGNNCC 6 cut(s) 292, 580, 853, 1680, 2225, 2602
BmrFI CCNGG 3 cut(s) 1676, 2810, 2881
BmrI ACTGGG 2 cut(s) 903, 974
BmsI GCATC 3 cut(s) 1082, 2561, 2931
BmuI ACTGGG 2 cut(s) 903, 974
BpiI GAAGAC 1 cut(s) 2355
BpmI CTGGAG 2 cut(s) 854, 867
Bpu14I TTCGAA 1 cut(s) 2547
BpuEI CTTGAG 3 cut(s) 1046, 1694, 2242
BpuMI CCSGG 1 cut(s) 2881
BsaBI GATNNNNATC 2 cut(s) 2016, 3033
BsaHI GRCGYC 2 cut(s) 225, 673
BsaI GGTCTC 1 cut(s) 2957
BsaJI CCNNGG 4 cut(s) 1255, 1546, 2330, 2760
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bsc4I CCNNNNNNNGG 8 cut(s) 110, 308, 432, 1328, 1760, 2627, 2782, 2879
Bse1I ACTGG 9 cut(s) 334, 580, 898, 969, 1111, 1459, 1786, 2134, 2749
Bse21I CCTNAGG 1 cut(s) 372
Bse3DI GCAATG 3 cut(s) 2488, 2801, 2860
Bse8I GATNNNNATC 2 cut(s) 2016, 3033
BseBI CCWGG 2 cut(s) 1676, 2810
BseDI CCNNGG 4 cut(s) 1255, 1546, 2330, 2760
BseGI GGATG 5 cut(s) 582, 1073, 2450, 2642, 2836
BseJI GATNNNNATC 2 cut(s) 2016, 3033
BseLI CCNNNNNNNGG 8 cut(s) 110, 308, 432, 1328, 1760, 2627, 2782, 2879
BseMI GCAATG 3 cut(s) 2488, 2801, 2860
BseMII CTCAG 8 cut(s) 386, 538, 791, 1619, 1625, 1803, 2049, 2134
BseNI ACTGG 9 cut(s) 334, 580, 898, 969, 1111, 1459, 1786, 2134, 2749
BseRI GAGGAG 1 cut(s) 1074
BseXI GCAGC 3 cut(s) 478, 1939, 2322
BseYI CCCAGC 1 cut(s) 667
BsgI GTGCAG 2 cut(s) 1938, 2321
BshFI GGCC 6 cut(s) 987, 1240, 1674, 2710, 2872, 2898
BshNI GGYRCC 2 cut(s) 851, 2223
BsiHKAI GWGCWC 5 cut(s) 80, 188, 1708, 1797, 2209
BsiSI CCGG 1 cut(s) 2880
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 8 cut(s) 110, 308, 432, 1328, 1760, 2627, 2782, 2879
BsmAI GTCTC 5 cut(s) 392, 420, 1175, 1974, 2957
BsmBI CGTCTC 2 cut(s) 392, 1175
BsmFI GGGAC 1 cut(s) 520
BsmI GAATGC 5 cut(s) 10, 2204, 2742, 2930, 2985
BsnI GGCC 6 cut(s) 987, 1240, 1674, 2710, 2872, 2898
Bso31I GGTCTC 1 cut(s) 2957
Bsp119I TTCGAA 1 cut(s) 2547
Bsp1286I GDGCHC 5 cut(s) 80, 188, 1708, 1797, 2209
Bsp143I GATC 6 cut(s) 124, 166, 2241, 2326, 2357, 2467
Bsp19I CCATGG 1 cut(s) 2760
BspACI CCGC 1 cut(s) 2227
BspANI GGCC 6 cut(s) 987, 1240, 1674, 2710, 2872, 2898
BspCNI CTCAG 8 cut(s) 385, 537, 790, 1620, 1624, 1802, 2048, 2133
BspHI TCATGA 2 cut(s) 180, 2991
BspLI GGNNCC 6 cut(s) 292, 580, 853, 1680, 2225, 2602
BspMAI CTGCAG 1 cut(s) 215
BspMI ACCTGC 2 cut(s) 1849, 2261
BspPI GGATC 3 cut(s) 161, 2321, 2365
BspQI GCTCTTC 1 cut(s) 1289
BspT104I TTCGAA 1 cut(s) 2547
BspT107I GGYRCC 2 cut(s) 851, 2223
BspTNI GGTCTC 1 cut(s) 2957
BsrDI GCAATG 3 cut(s) 2488, 2801, 2860
BsrI ACTGG 9 cut(s) 334, 580, 898, 969, 1111, 1459, 1786, 2134, 2749
BssECI CCNNGG 4 cut(s) 1255, 1546, 2330, 2760
BssMI GATC 6 cut(s) 124, 166, 2241, 2326, 2357, 2467
BssNAI GTATAC 1 cut(s) 2107
BssNI GRCGYC 2 cut(s) 225, 673
BssT1I CCWWGG 4 cut(s) 1255, 1546, 2330, 2760
Bst1107I GTATAC 1 cut(s) 2107
Bst2UI CCWGG 2 cut(s) 1676, 2810
Bst4CI ACNGT 5 cut(s) 461, 547, 772, 2777, 2968
Bst6I CTCTTC 5 cut(s) 244, 828, 1289, 1635, 2549
BstACI GRCGYC 2 cut(s) 225, 673
BstBI TTCGAA 1 cut(s) 2547
BstC8I GCNNGC 6 cut(s) 273, 289, 398, 1574, 2340, 2536
BstDSI CCRYGG 1 cut(s) 2760
BstENI CCTNNNNNAGG 2 cut(s) 306, 1758
BstF5I GGATG 5 cut(s) 582, 1073, 2450, 2642, 2836
BstH2I RGCGCY 1 cut(s) 1573
BstHHI GCGC 3 cut(s) 396, 1572, 2985
BstKTI GATC 6 cut(s) 127, 169, 2244, 2329, 2360, 2470
BstMAI GTCTC 5 cut(s) 392, 420, 1175, 1974, 2957
BstMBI GATC 6 cut(s) 124, 166, 2241, 2326, 2357, 2467
BstMWI GCNNNNNNNGC 4 cut(s) 231, 851, 1050, 1079
BstNI CCWGG 2 cut(s) 1676, 2810
BstNSI RCATGY 3 cut(s) 234, 415, 1848
BstSCI CCNGG 3 cut(s) 1674, 2808, 2879
BstSFI CTRYAG 2 cut(s) 211, 2665
BstV1I GCAGC 3 cut(s) 478, 1939, 2322
BstV2I GAAGAC 1 cut(s) 2355
BstX2I RGATCY 3 cut(s) 166, 2326, 2357
BstYI RGATCY 3 cut(s) 166, 2326, 2357
BstZ17I GTATAC 1 cut(s) 2107
Bsu36I CCTNAGG 1 cut(s) 372
BsuRI GGCC 6 cut(s) 987, 1240, 1674, 2710, 2872, 2898
BtgI CCRYGG 1 cut(s) 2760
BtsCI GGATG 5 cut(s) 582, 1073, 2450, 2642, 2836
BtsI GCAGTG 2 cut(s) 134, 1460
BveI ACCTGC 2 cut(s) 1849, 2261
Cac8I GCNNGC 6 cut(s) 273, 289, 398, 1574, 2340, 2536
CciI TCATGA 2 cut(s) 180, 2991
CfoI GCGC 3 cut(s) 396, 1572, 2985
Cfr13I GGNCC 1 cut(s) 1238
CseI GACGC 2 cut(s) 214, 662
Csp6I GTAC 3 cut(s) 462, 1017, 2127
CviQI GTAC 3 cut(s) 462, 1017, 2127
DpnI GATC 6 cut(s) 126, 168, 2243, 2328, 2359, 2469
DpnII GATC 6 cut(s) 124, 166, 2241, 2326, 2357, 2467
DraIII CACNNNGTG 1 cut(s) 2978
EaeI YGGCCR 1 cut(s) 1672
Eam1104I CTCTTC 5 cut(s) 244, 828, 1289, 1635, 2549
EarI CTCTTC 5 cut(s) 244, 828, 1289, 1635, 2549
Ecl136II GAGCTC 3 cut(s) 186, 1706, 2207
Eco130I CCWWGG 4 cut(s) 1255, 1546, 2330, 2760
Eco147I AGGCCT 1 cut(s) 2898
Eco24I GRGCYC 3 cut(s) 188, 1708, 2209
Eco31I GGTCTC 1 cut(s) 2957
Eco32I GATATC 1 cut(s) 2662
Eco53kI GAGCTC 3 cut(s) 186, 1706, 2207
Eco57I CTGAAG 5 cut(s) 183, 412, 1254, 1491, 2258
Eco81I CCTNAGG 1 cut(s) 372
EcoICRI GAGCTC 3 cut(s) 186, 1706, 2207
EcoNI CCTNNNNNAGG 2 cut(s) 306, 1758
EcoRI GAATTC 2 cut(s) 1592, 1821
EcoRII CCWGG 2 cut(s) 1674, 2808
EcoRV GATATC 1 cut(s) 2662
EcoT14I CCWWGG 4 cut(s) 1255, 1546, 2330, 2760
EcoT22I ATGCAT 2 cut(s) 74, 207
EcoT38I GRGCYC 3 cut(s) 188, 1708, 2209
ErhI CCWWGG 4 cut(s) 1255, 1546, 2330, 2760
Esp3I CGTCTC 2 cut(s) 392, 1175
FalI AAGNNNNNCTT 2 cut(s) 2014, 2046
FaqI GGGAC 1 cut(s) 520
FblI GTMKAC 1 cut(s) 2106
Fnu4HI GCNGC 3 cut(s) 467, 1953, 2336
FokI GGATG 5 cut(s) 569, 1060, 2437, 2649, 2843
FriOI GRGCYC 3 cut(s) 188, 1708, 2209
Fsp4HI GCNGC 3 cut(s) 467, 1953, 2336
GlaI GCGC 3 cut(s) 395, 1571, 2984
GluI GCNGC 3 cut(s) 467, 1953, 2336
GsaI CCCAGC 1 cut(s) 671
GsuI CTGGAG 2 cut(s) 854, 867
HaeII RGCGCY 1 cut(s) 1573
HaeIII GGCC 6 cut(s) 987, 1240, 1674, 2710, 2872, 2898
HapII CCGG 1 cut(s) 2880
HgaI GACGC 2 cut(s) 214, 662
HhaI GCGC 3 cut(s) 396, 1572, 2985
Hin1I GRCGYC 2 cut(s) 225, 673
Hin6I GCGC 3 cut(s) 394, 1570, 2983
HinP1I GCGC 3 cut(s) 394, 1570, 2983
HincII GTYRAC 2 cut(s) 2052, 2794
HindII GTYRAC 2 cut(s) 2052, 2794
HindIII AAGCTT 3 cut(s) 1190, 2092, 2536
HpaII CCGG 1 cut(s) 2880
HphI GGTGA 8 cut(s) 374, 644, 1541, 1757, 2531, 2738, 2964, 3055
Hpy99I CGWCG 1 cut(s) 2357
HpyAV CCTTC 9 cut(s) 59, 312, 436, 741, 1199, 1754, 1875, 2171, 2498
HpyCH4III ACNGT 5 cut(s) 461, 547, 772, 2777, 2968
HpyCH4IV ACGT 2 cut(s) 589, 1957
HpyF10VI GCNNNNNNNGC 4 cut(s) 231, 851, 1050, 1079
HpySE526I ACGT 2 cut(s) 589, 1957
Hsp92I GRCGYC 2 cut(s) 225, 673
HspAI GCGC 3 cut(s) 394, 1570, 2983
Kzo9I GATC 6 cut(s) 124, 166, 2241, 2326, 2357, 2467
LguI GCTCTTC 1 cut(s) 1289
LmnI GCTCC 5 cut(s) 296, 1567, 2174, 2811, 2966
Lsp1109I GCAGC 3 cut(s) 478, 1939, 2322
LweI GCATC 3 cut(s) 1082, 2561, 2931
MaeII ACGT 2 cut(s) 589, 1957
MalI GATC 6 cut(s) 126, 168, 2243, 2328, 2359, 2469
MboI GATC 6 cut(s) 124, 166, 2241, 2326, 2357, 2467
MfeI CAATTG 2 cut(s) 1917, 2075
MflI RGATCY 3 cut(s) 166, 2326, 2357
MhlI GDGCHC 5 cut(s) 80, 188, 1708, 1797, 2209
MlsI TGGCCA 1 cut(s) 1674
MluNI TGGCCA 1 cut(s) 1674
MmeI TCCRAC 5 cut(s) 197, 467, 542, 572, 1626
Mox20I TGGCCA 1 cut(s) 1674
Mph1103I ATGCAT 2 cut(s) 74, 207
MroXI GAANNNNTTC 3 cut(s) 1768, 1833, 2043
MscI TGGCCA 1 cut(s) 1674
MseI TTAA 5 cut(s) 542, 1410, 1925, 2148, 2156
MslI CAYNNNNRTG 4 cut(s) 2517, 2759, 2990, 2996
Msp20I TGGCCA 1 cut(s) 1674
MspA1I CMGCKG 1 cut(s) 469
MspI CCGG 1 cut(s) 2880
MspR9I CCNGG 3 cut(s) 1676, 2810, 2881
MunI CAATTG 2 cut(s) 1917, 2075
Mva1269I GAATGC 5 cut(s) 10, 2204, 2742, 2930, 2985
MvaI CCWGG 2 cut(s) 1676, 2810
MwoI GCNNNNNNNGC 4 cut(s) 231, 851, 1050, 1079
NciI CCSGG 1 cut(s) 2881
NcoI CCATGG 1 cut(s) 2760
NdeII GATC 6 cut(s) 124, 166, 2241, 2326, 2357, 2467
NlaIV GGNNCC 6 cut(s) 292, 580, 853, 1680, 2225, 2602
NmuCI GTSAC 5 cut(s) 226, 256, 1273, 2519, 3061
NsiI ATGCAT 2 cut(s) 74, 207
NspI RCATGY 3 cut(s) 234, 415, 1848
NspV TTCGAA 1 cut(s) 2547
PagI TCATGA 2 cut(s) 180, 2991
PceI AGGCCT 1 cut(s) 2898
PciI ACATGT 1 cut(s) 411
PciSI GCTCTTC 1 cut(s) 1289
PctI GAATGC 5 cut(s) 10, 2204, 2742, 2930, 2985
PdmI GAANNNNTTC 3 cut(s) 1768, 1833, 2043
PflFI GACNNNGTC 3 cut(s) 1435, 2581, 2777
PflMI CCANNNNNTGG 2 cut(s) 110, 1328
PfoI TCCNGGA 1 cut(s) 2808
PkrI GCNGC 3 cut(s) 468, 1954, 2337
PscI ACATGT 1 cut(s) 411
PshBI ATTAAT 1 cut(s) 1925
Psp124BI GAGCTC 3 cut(s) 188, 1708, 2209
Psp6I CCWGG 2 cut(s) 1674, 2808
PspFI CCCAGC 1 cut(s) 667
PspGI CCWGG 2 cut(s) 1674, 2808
PspN4I GGNNCC 6 cut(s) 292, 580, 853, 1680, 2225, 2602
PspPI GGNCC 1 cut(s) 1238
PstI CTGCAG 1 cut(s) 215
PsuI RGATCY 3 cut(s) 166, 2326, 2357
PsyI GACNNNGTC 3 cut(s) 1435, 2581, 2777
PvuII CAGCTG 1 cut(s) 469
RsaI GTAC 3 cut(s) 463, 1018, 2128
RsaNI GTAC 3 cut(s) 462, 1017, 2127
RseI CAYNNNNRTG 4 cut(s) 2517, 2759, 2990, 2996
SacI GAGCTC 3 cut(s) 188, 1708, 2209
SapI GCTCTTC 1 cut(s) 1289
SaqAI TTAA 5 cut(s) 542, 1410, 1925, 2148, 2156
SatI GCNGC 3 cut(s) 467, 1953, 2336
Sau3AI GATC 6 cut(s) 124, 166, 2241, 2326, 2357, 2467
Sau96I GGNCC 1 cut(s) 1238
ScaI AGTACT 1 cut(s) 2128
ScrFI CCNGG 3 cut(s) 1676, 2810, 2881
SduI GDGCHC 5 cut(s) 80, 188, 1708, 1797, 2209
SfaNI GCATC 3 cut(s) 1082, 2561, 2931
SfcI CTRYAG 2 cut(s) 211, 2665
SfuI TTCGAA 1 cut(s) 2547
SmiMI CAYNNNNRTG 4 cut(s) 2517, 2759, 2990, 2996
SmlI CTYRAG 3 cut(s) 1025, 1709, 2257
SmoI CTYRAG 3 cut(s) 1025, 1709, 2257
SpeI ACTAGT 2 cut(s) 1019, 1910
SseBI AGGCCT 1 cut(s) 2898
SsiI CCGC 1 cut(s) 2227
SspI AATATT 1 cut(s) 2398
SstI GAGCTC 3 cut(s) 188, 1708, 2209
StuI AGGCCT 1 cut(s) 2898
StyD4I CCNGG 3 cut(s) 1674, 2808, 2879
StyI CCWWGG 4 cut(s) 1255, 1546, 2330, 2760
TaaI ACNGT 5 cut(s) 461, 547, 772, 2777, 2968
TaiI ACGT 2 cut(s) 592, 1960
TaqI TCGA 6 cut(s) 737, 1421, 1702, 1871, 2493, 2547
TatI WGTACW 2 cut(s) 1016, 2126
Tru1I TTAA 5 cut(s) 542, 1410, 1925, 2148, 2156
Tru9I TTAA 5 cut(s) 542, 1410, 1925, 2148, 2156
TseFI GTSAC 5 cut(s) 226, 256, 1273, 2519, 3061
TseI GCWGC 3 cut(s) 466, 1952, 2335
Tsp45I GTSAC 5 cut(s) 226, 256, 1273, 2519, 3061
TspGWI ACGGA 3 cut(s) 568, 2370, 2729
Tth111I GACNNNGTC 3 cut(s) 1435, 2581, 2777
Van91I CCANNNNNTGG 2 cut(s) 110, 1328
VspI ATTAAT 1 cut(s) 1925
XagI CCTNNNNNAGG 2 cut(s) 306, 1758
XapI RAATTY 9 cut(s) 44, 106, 366, 438, 497, 991, 1592, 1685, 1821
XbaI TCTAGA 1 cut(s) 2323
XceI RCATGY 3 cut(s) 234, 415, 1848
XcmI CCANNNNNNNNNTGG 1 cut(s) 1103
XmaJI CCTAGG 1 cut(s) 1255
XmiI GTMKAC 1 cut(s) 2106
XmnI GAANNNNTTC 3 cut(s) 1768, 1833, 2043
ZrmI AGTACT 1 cut(s) 2128
Zsp2I ATGCAT 2 cut(s) 74, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.