Rh3DG127500

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
10804492 .. 10804803
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG127500.1

Sequence Viewer

Length: 312 bp
ATGGCTTTCCCTGACCGTGTCATGGACATAGTTGACACTTCATTGCTCCTGGAAGCAGATGAGGATAATGATGACAATAATGATAACAAATACAGCAATGACGTACAAGAAAGGCCGATAGCCGGGTATAAGGATAAAGGCCTAGTCAAAGCAAGAAGATCGGAAGAATGCTTGATTTCAGTGATGCAGATTGGTCTCTCATGCTCCACAGAATCACCAAGTGAGCGCATTCTGATGAATGTGGTTGTGAACAAGATGACTGCAATTAGAGATTCCTATCTCAAATTGACCAAGAACAAGTTTGTCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

103

Amino Acids

11.66

Weight (kDa)

4.78

Isoelectric Point (pI)

56.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 221
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 2 cut(s) 22, 122
AjnI CCWGG 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 200
AoxI GGCC 2 cut(s) 113, 139
AspLEI GCGC 1 cut(s) 228
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 207, 298
BcgI CGANNNNNNTGC 2 cut(s) 141, 175
BciT130I CCWGG 1 cut(s) 50
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 1 cut(s) 143
Bme1390I CCNGG 2 cut(s) 50, 124
BmrFI CCNGG 2 cut(s) 50, 124
BmsI GCATC 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 200
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 122
Bse3DI GCAATG 2 cut(s) 41, 103
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 1 cut(s) 50
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 22, 122
BseMI GCAATG 2 cut(s) 41, 103
BshFI GGCC 2 cut(s) 115, 141
BsiSI CCGG 1 cut(s) 123
BslI CCNNNNNNNGG 2 cut(s) 22, 122
BsmAI GTCTC 1 cut(s) 200
BsmI GAATGC 2 cut(s) 173, 228
BsnI GGCC 2 cut(s) 115, 141
Bso31I GGTCTC 1 cut(s) 200
Bsp143I GATC 1 cut(s) 158
BspANI GGCC 2 cut(s) 115, 141
BspTNI GGTCTC 1 cut(s) 200
BsrDI GCAATG 2 cut(s) 41, 103
BssMI GATC 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 17
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 1 cut(s) 161
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 48, 122
BsuRI GGCC 2 cut(s) 115, 141
BtsIMutI CAGTG 1 cut(s) 186
CfoI GCGC 1 cut(s) 228
Csp6I GTAC 1 cut(s) 104
CviAII CATG 2 cut(s) 22, 201
CviJI RGCY 4 cut(s) 5, 115, 122, 141
CviKI_1 RGCY 4 cut(s) 5, 115, 122, 141
CviQI GTAC 1 cut(s) 104
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
DraIII CACNNNGTG 1 cut(s) 221
Eco147I AGGCCT 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 25, 204
FaiI YATR 4 cut(s) 23, 29, 129, 202
FatI CATG 2 cut(s) 21, 200
FspBI CTAG 1 cut(s) 143
GlaI GCGC 1 cut(s) 227
HaeIII GGCC 2 cut(s) 115, 141
HapII CCGG 1 cut(s) 123
HhaI GCGC 1 cut(s) 228
Hin1II CATG 2 cut(s) 25, 204
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 2 cut(s) 212, 272
HpaII CCGG 1 cut(s) 123
HphI GGTGA 2 cut(s) 207, 298
Hpy166II GTNNAC 2 cut(s) 34, 250
Hpy188I TCNGA 2 cut(s) 163, 234
Hpy8I GTNNAC 2 cut(s) 34, 250
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 187, 263
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 2 cut(s) 25, 204
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 1 cut(s) 158
LmnI GCTCC 2 cut(s) 51, 209
LpnPI CCDG 4 cut(s) 24, 35, 62, 136
LweI GCATC 1 cut(s) 174
MaeI CTAG 1 cut(s) 143
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 304
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MboII GAAGA 2 cut(s) 168, 176
MluCI AATT 2 cut(s) 264, 284
MnlI CCTC 1 cut(s) 55
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 2 cut(s) 50, 124
Mva1269I GAATGC 2 cut(s) 173, 228
MvaI CCWGG 1 cut(s) 50
NciI CCSGG 1 cut(s) 124
NdeII GATC 1 cut(s) 158
NlaIII CATG 2 cut(s) 25, 204
NmuCI GTSAC 1 cut(s) 304
PceI AGGCCT 1 cut(s) 141
PctI GAATGC 2 cut(s) 173, 228
PfeI GAWTC 2 cut(s) 212, 272
PflFI GACNNNGTC 1 cut(s) 17
PfoI TCCNGGA 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PsyI GACNNNGTC 1 cut(s) 17
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 233
Sau3AI GATC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 50, 124
SetI ASST 2 cut(s) 105, 311
SfaNI GCATC 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 2 cut(s) 264, 284
SseBI AGGCCT 1 cut(s) 141
SspMI CTAG 1 cut(s) 143
StuI AGGCCT 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 48, 122
TaaI ACNGT 1 cut(s) 17
TaiI ACGT 1 cut(s) 105
TasI AATT 2 cut(s) 264, 284
TfiI GAWTC 2 cut(s) 212, 272
TscAI CASTG 1 cut(s) 186
TseFI GTSAC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 2 cut(s) 30, 251
TspRI CASTG 1 cut(s) 186
Tth111I GACNNNGTC 1 cut(s) 17
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.