MD13G1275300.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
37628225 .. 37629057
833 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1275300.v1.1.491

Sequence Viewer

Length: 732 bp
ATGGAGGGTAACTATTTCAGTGGTAGTCTCCTTAAAGAAATTGGGAGGCTTCAGAAGTTGGAAAAAATATCTTTGGGCAGCATCAATCTTTTTGGGCCAATCCTATCATCCCTAGGTAACTTGACTTCATTGATAGAACTCTATCTAAACATCAATAGATTTGCGAGAAATATACCACCAAGTCTAGGAGACTACCAACATCTACTAAAGCTTGAGGTTTCTAATAACAATCTAACAGGCATCATACCTAAAGAGCTATATTTATCAGGAAACAATTTATCAGCTGAAATTCCCACAAGCCTTGGCAGTTGTATTATGTTGGTGTGCTTGAATTTGGAAAGTAATTCATTTCAAGGAATAATTCCTCAATCTCTTAAAAGTTTAAGAAGCCTGGAAGATATGGATCTTTCGCGCAGTAACTTATCCGAGCAGATTCCTGAATTTTTATGCAAGTTTAAATTTCTTACGCACCTTAACCTTTCATATAACAATTTTGAGGGTAAAATGCATGAATCCGGAATCTTTTCAAATGCACCTGGTCTCTCAATTCTTGGAAATCCTAAGCTCTATGGTGGCAACTCAAAATTACATTTACCTGCATGCCCAAACATAAAGCCTCATTCATCTCGAGGACTACTTGCGCGAAAAGTGGTCATCCATGTAGCTTGTGCACTTGCCTTCTTAATTGCTATGTCTTGCTTCATTGTTGCCTATTCAATGCTTAAAAAGTGA

Protein Analysis

244

Amino Acids

26.73

Weight (kDa)

9.0

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 110 - 165 5e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 604
AccII CGCG 2 cut(s) 412, 643
AccIII TCCGGA 1 cut(s) 515
AclWI GGATC 1 cut(s) 411
AcsI RAATTY 4 cut(s) 288, 331, 440, 458
AcuI CTGAAG 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 4 cut(s) 331, 353, 528, 717
AjnI CCWGG 2 cut(s) 390, 535
AluBI AGCT 5 cut(s) 211, 256, 284, 565, 665
AluI AGCT 5 cut(s) 211, 256, 284, 565, 665
Alw21I GWGCWC 1 cut(s) 673
Alw26I GTCTC 3 cut(s) 32, 183, 545
Alw44I GTGCAC 1 cut(s) 669
AlwI GGATC 1 cut(s) 411
Ama87I CYCGRG 1 cut(s) 627
Aor13HI TCCGGA 1 cut(s) 515
AoxI GGCC 1 cut(s) 95
ApaLI GTGCAC 1 cut(s) 669
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 4 cut(s) 288, 331, 440, 458
Asp700I GAANNNNTTC 1 cut(s) 523
AspA2I CCTAGG 1 cut(s) 112
AspLEI GCGC 2 cut(s) 414, 643
AspS9I GGNCC 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 627
AvrII CCTAGG 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 673
BarI GAAGNNNNNNTAC 2 cut(s) 109, 141
Bbv12I GWGCWC 1 cut(s) 673
BbvI GCAGC 1 cut(s) 90
BciT130I CCWGG 2 cut(s) 392, 537
BcoDI GTCTC 3 cut(s) 32, 183, 545
BfaI CTAG 2 cut(s) 113, 185
BfuAI ACCTGC 1 cut(s) 604
BisI GCNGC 1 cut(s) 79
BlnI CCTAGG 1 cut(s) 112
BlsI GCNGC 1 cut(s) 80
Bme1390I CCNGG 2 cut(s) 392, 537
BmeT110I CYCGRG 1 cut(s) 627
BmgT120I GGNCC 1 cut(s) 95
BmrFI CCNGG 2 cut(s) 392, 537
BmsI GCATC 2 cut(s) 90, 249
Bpu10I CCTNAGC 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 233
BsaBI GATNNNNATC 1 cut(s) 402
BsaI GGTCTC 1 cut(s) 545
BsaJI CCNNGG 2 cut(s) 112, 301
BsaWI WCCGGW 1 cut(s) 515
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse8I GATNNNNATC 1 cut(s) 402
BseAI TCCGGA 1 cut(s) 515
BseBI CCWGG 2 cut(s) 392, 537
BseDI CCNNGG 2 cut(s) 112, 301
BseGI GGATG 2 cut(s) 107, 654
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 1 cut(s) 185
BseSI GKGCMC 1 cut(s) 673
BseXI GCAGC 1 cut(s) 90
Bsh1236I CGCG 2 cut(s) 412, 643
BshFI GGCC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 673
BsiHKCI CYCGRG 1 cut(s) 627
BsiSI CCGG 1 cut(s) 516
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 3 cut(s) 32, 183, 545
BsnI GGCC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 545
BsoBI CYCGRG 1 cut(s) 627
Bsp1286I GDGCHC 1 cut(s) 673
Bsp13I TCCGGA 1 cut(s) 515
Bsp143I GATC 1 cut(s) 403
BspANI GGCC 1 cut(s) 97
BspEI TCCGGA 1 cut(s) 515
BspFNI CGCG 2 cut(s) 412, 643
BspMI ACCTGC 1 cut(s) 604
BspPI GGATC 1 cut(s) 411
BspTNI GGTCTC 1 cut(s) 545
BssECI CCNNGG 2 cut(s) 112, 301
BssMI GATC 1 cut(s) 403
BssT1I CCWWGG 2 cut(s) 112, 301
Bst2UI CCWGG 2 cut(s) 392, 537
BstC8I GCNNGC 1 cut(s) 601
BstDEI CTNAG 1 cut(s) 561
BstF5I GGATG 2 cut(s) 107, 654
BstFNI CGCG 2 cut(s) 412, 643
BstHHI GCGC 2 cut(s) 414, 643
BstKTI GATC 1 cut(s) 406
BstMAI GTCTC 3 cut(s) 32, 183, 545
BstMBI GATC 1 cut(s) 403
BstNI CCWGG 2 cut(s) 392, 537
BstNSI RCATGY 1 cut(s) 603
BstSCI CCNGG 2 cut(s) 390, 535
BstSLI GKGCMC 1 cut(s) 673
BstUI CGCG 2 cut(s) 412, 643
BstV1I GCAGC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 2 cut(s) 107, 654
BtsIMutI CAGTG 1 cut(s) 25
BveI ACCTGC 1 cut(s) 604
Cac8I GCNNGC 1 cut(s) 601
CfoI GCGC 2 cut(s) 414, 643
Cfr13I GGNCC 1 cut(s) 95
CsiI ACCWGGT 1 cut(s) 535
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 3 cut(s) 509, 600, 659
DdeI CTNAG 1 cut(s) 561
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
DraI TTTAAA 1 cut(s) 457
Eco130I CCWWGG 2 cut(s) 112, 301
Eco31I GGTCTC 1 cut(s) 545
Eco57I CTGAAG 1 cut(s) 35
Eco88I CYCGRG 1 cut(s) 627
EcoRII CCWGG 2 cut(s) 390, 535
EcoT14I CCWWGG 2 cut(s) 112, 301
EcoT22I ATGCAT 1 cut(s) 510
ErhI CCWWGG 2 cut(s) 112, 301
FaeI CATG 3 cut(s) 512, 603, 662
FatI CATG 3 cut(s) 508, 599, 658
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 2 cut(s) 94, 641
Fsp4HI GCNGC 1 cut(s) 79
FspBI CTAG 2 cut(s) 113, 185
GlaI GCGC 2 cut(s) 413, 642
GluI GCNGC 1 cut(s) 79
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 516
HhaI GCGC 2 cut(s) 414, 643
Hin1II CATG 3 cut(s) 512, 603, 662
Hin6I GCGC 2 cut(s) 412, 641
HinP1I GCGC 2 cut(s) 412, 641
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 3 cut(s) 433, 512, 519
HpaII CCGG 1 cut(s) 516
Hpy166II GTNNAC 1 cut(s) 671
Hpy188I TCNGA 2 cut(s) 54, 427
Hpy188III TCNNGA 4 cut(s) 267, 437, 516, 627
Hpy8I GTNNAC 1 cut(s) 671
HpyAV CCTTC 1 cut(s) 688
HpyCH4V TGCA 5 cut(s) 450, 508, 533, 599, 671
HpyF3I CTNAG 1 cut(s) 561
Hsp92II CATG 3 cut(s) 512, 603, 662
HspAI GCGC 2 cut(s) 412, 641
Kpn2I TCCGGA 1 cut(s) 515
Kzo9I GATC 1 cut(s) 403
LpnPI CCDG 9 cut(s) 222, 252, 377, 404, 450, 522, 529, 549, 609
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 2 cut(s) 90, 249
MabI ACCWGGT 1 cut(s) 535
MaeI CTAG 2 cut(s) 113, 185
MaeIII GTNAC 3 cut(s) 8, 116, 416
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 1 cut(s) 407
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 1 cut(s) 673
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 6 cut(s) 39, 208, 375, 490, 623, 627
Mph1103I ATGCAT 1 cut(s) 510
MroI TCCGGA 1 cut(s) 515
MroXI GAANNNNTTC 1 cut(s) 523
MseI TTAA 7 cut(s) 33, 375, 383, 456, 474, 683, 723
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 1 cut(s) 516
MspR9I CCNGG 2 cut(s) 392, 537
MvaI CCWGG 2 cut(s) 392, 537
MvnI CGCG 2 cut(s) 412, 643
NdeII GATC 1 cut(s) 403
NlaIII CATG 3 cut(s) 512, 603, 662
NsiI ATGCAT 1 cut(s) 510
NspI RCATGY 1 cut(s) 603
PaeI GCATGC 1 cut(s) 603
PaeR7I CTCGAG 1 cut(s) 627
PdmI GAANNNNTTC 1 cut(s) 523
PfeI GAWTC 3 cut(s) 433, 512, 519
PkrI GCNGC 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 390, 535
PspGI CCWGG 2 cut(s) 390, 535
PspPI GGNCC 1 cut(s) 95
PsuI RGATCY 1 cut(s) 403
PvuII CAGCTG 1 cut(s) 284
SaqAI TTAA 7 cut(s) 33, 375, 383, 456, 474, 683, 723
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 1 cut(s) 403
Sau96I GGNCC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 392, 537
SduI GDGCHC 1 cut(s) 673
SexAI ACCWGGT 1 cut(s) 535
SfaNI GCATC 2 cut(s) 90, 249
Sfr274I CTCGAG 1 cut(s) 627
SlaI CTCGAG 1 cut(s) 627
SmlI CTYRAG 2 cut(s) 212, 627
SmoI CTYRAG 2 cut(s) 212, 627
SphI GCATGC 1 cut(s) 603
SspMI CTAG 2 cut(s) 113, 185
StyD4I CCNGG 2 cut(s) 390, 535
StyI CCWWGG 2 cut(s) 112, 301
TaqI TCGA 1 cut(s) 628
TfiI GAWTC 3 cut(s) 433, 512, 519
Tru1I TTAA 7 cut(s) 33, 375, 383, 456, 474, 683, 723
Tru9I TTAA 7 cut(s) 33, 375, 383, 456, 474, 683, 723
TscAI CASTG 1 cut(s) 25
TseI GCWGC 1 cut(s) 78
TspDTI ATGAA 6 cut(s) 117, 336, 471, 525, 612, 691
TspRI CASTG 1 cut(s) 25
VneI GTGCAC 1 cut(s) 669
XapI RAATTY 4 cut(s) 288, 331, 440, 458
XceI RCATGY 1 cut(s) 603
XhoI CTCGAG 1 cut(s) 627
XmaJI CCTAGG 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 523
XspI CTAG 2 cut(s) 113, 185
Zsp2I ATGCAT 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.