MD00G1079100.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
15971455 .. 15975080
3626 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1079100.v1.1.491

Sequence Viewer

Length: 3150 bp
ATGATGGAGCATTCACGTACTATTCGTAATCCGGTTTTGTTGAAATTCCTGCATGGCTTCTTTCTCTTGGTCTTATGCATGATGAGCACATCTTCGGAATCTGCAGCATTTCCCAGCCCTACCATGCTTGGAAACGAATCTGATCGCTTGGCTTTGCTAGACTTCAAGAAAAGAATAACTGAAGATCCTCTCAGTGTCATGAGCTCGTGGAATCATTCCATCCACTTCTGCAGTTGGGTAGGCATTGCATGCCACCGTGCCACCCAAAGAGTCTTGATTCTGGACCTGGAAGATAAACAACTGGTAGGCTCCATTCCACCTTCCATTGGAAATCTCACTCGTCTAATTGAAATAAGCTTGGGAATCAACGAGTTTCATGGTGAAATCCCTCAAGAATTGGGTCGACTACGTACCCTGGAAAGTCTCAACCTGTCTTTCAATTCTTTAGGTGGGAAAATTCCGACTAATATGTCCCACTGTACTCAACTAAGAGTTTTCGATCTTCTTTCCAATAAGATTATTGGGTCGATTCCACGCCAACTCAGTTCATGGTTGAGTTTGACTCTTCTAAAACTTGGAGGAAATGATCTCAGTGGAACCATCCCAGGTTGGATAGGAAACTTTTCTTCTTTGAGAGGTCTTGGTCTTGCTCACAACAATTTTCAAGGAAGCATACCAAATGAGCTCGGGCATATAACAACCTTGCAGATATTCCTCGTTGGGGGCAATAATTTGTCTGGTATGCTCCCTTCTTCAATTTATAATATTTCTTCCATATACATGTTCGGTGTTCAAATAAACCAATTACATGGAGAGCTACCACCAAATCTCGGCATCATGCTTCCTAATCTCGAAGTATTTTTATGTGATATAAACAATTTCACAGGAAATATTCCTGTATCATTGTCAAATGCTTCTAGACTTCAGAGGATTGATTTTTCTACAAATGGCTTCACGGGGACAGTCCCTGGAGAAAGTCTCGGAAGCTTGCGAAGCTTAATTTCGCTAAACTTTGGAGAAAATCGACTGGGAAATGGAAAACTTGGTGATTTGAGTTTTCTCAATTTCTTGGCTAATTGTACTAGTCTTAAAAAATTGGGTCTTGGCTATAATCATTTTGGGGGAGAAATCCCGAGATCCATAGCCAACCTTTCGACCCAACTACAAGTTCTTTATCTAGGGGTTAATTTGTTACATGGAAGCCTCCCAAACGGCATTGGAAATCTTATAAACCTTGCCGATCTAGATATGACTTATACCTATTTGGCGGGTGTTGTCCCCGAAGAAATTGGGAAGCTCAAGAAGATGAAGAGACTAGCTTTGAATGCTAACAAATTTTCCGGGCCAATTCCATCTTCCCTTGGTAATATAACTTCATTGACAGAGCTCTACATGGACGGAAATAGTTTTGAGGGAAGTATACCTCCAAGTCTTGGAAACTGCAAAAACCTGTTGAAACTTTTACTTAATAATAACAATCTAACGGGCAGCATACCTAAAAAGCTTATGGAGATTTCAACCCTTTCAGGTCGTTTAGACCTATCTGGAAATTATTTGACTGGTTCATTGCCAAGTGAAGTGGGTGATTTGGTGCATCTCACAGTGCTAAATGTATCAAACAACAAGTTATCAGGGGAAATCCCCAGCACCATCGGCCGTTGTACCAGTTTGGGGGGCTTGTACTTGGACGACAACAAATTTGAAGGAACAATTCCTCAGTCTCTTAAAGATTTAAAGGGCTTGGAAGAACTTGACATTTCAAGCAATAACTTATCTGGGCAGATTCCTGAATTCATAAGCAAGCTTCGAGCACTTAAGTATCTCAATCTTTCGCATAATGATTTTGAAGGCGAGTTGCCTAAAGAAGGAATTTTTTCAAATGTCAGTGGTGTCTCAGTTCTGGGAAATCATAGGCTATGTGGTGGTATCCCAGAATTACATCAACCTGCATGCCCCAAAAATAAACACCATTCATCTCGAGGACTACTTTCCCCAAAAGTAGTCATCCCTATATCTTGTGCACTTGCATTCATAATTGCTCTATCATGCTTCTTCGGTGCTCGTTCAATGCTAAAAAAGTCAAGAGATGAACTTGTAACTTCACGTTCTTATAAGGATTGGAAATTAGGTGTTTCCTACTCACAGCTTGTTGCTTCGACTAACGGTTTCTCTGTGGATAATTTGATTGGTTCGGGAAGTTTTGGTTCTGTTTTTAAAGGGGTAATTCCTAGCGATGGAACGGTAGTTGCTGTTAAGGTATTAAACCTTCAACAACAAGGAGCGTCTAAGAGTTTCAATGATGAATGCAAAGCTTTAAGAAGTGTCAGGCACCGAAATCTTCTCAAGATCATAACTGCATGCTCAAGCATTGATAATCATGGTAGAGACTTCAAAAGTCTAGTCTTCGAGTTCATGCGAAATGGAAGTCTTGACTCGTGGTTGCATCCTAGAGACGAGGAGCAACCTCCAAGTAAGAGATTGAATTTTATGCAAAGATTGAACATAGCCATTGATGTTGCTTCTGCGTTAGATTATCTCCACAACCATTGTGAAACGTCCATTGTTCATTGTGATCTAAAGCCGAGCAATGTACTTCTTGATGAAGACATGGTAGCGCATGTTGGGGACTTTGGTTTAGCAAGGTTCCTCTTGGAAGCATCAAATGATCATTCCCTCAGTCAAACAATGTCATCGCAACTAAAGGGTTCTATAGGTTACATTCCTCCAGAGTACGGCATGGGAGGCCAAGTTTCCATACTGGGAGATGTTTATAGCTACGGGATACTCTTGCTAGAAATGTTCACAGGAAAAACACCTACTGATGACATGTTCATTGAAGGTCTAAGCATTTACAAATTCGCAGCCATGGCTTTGCCTGACCATGTCATGGATGTTGTTGACCCTTCATTGCTCCTCGACCTTGAAGTTGATGGTAGTGTTAACGATGACAGATACGAAAGGACTGCGCTGCCCAGACGTAACAATCACAGAGTGGTGAAAGCAAAAAAGGTAGAGGAATGCTTGTTTGATGTGATGCAGATAGGACTCTCCTGCTGTGCAGTATCACCAAAAGAGCGGATGCTTTTGAATATGGTTGTCGGAAAAATGAGTGCAATTAGAGACTCGTACCTCAAAGTTCAAGAAGGCTAA

Protein Analysis

1050

Amino Acids

114.57

Weight (kDa)

6.74

Isoelectric Point (pI)

36.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 46 - 84 8.2e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 380 - 504 1e-09 Leucine-rich repeat region
LRR_14 PF23598 520 - 613 1.3e-10 Leucine-rich repeat region
LRR_8 PF13855 559 - 615 3.4e-10 Leucine rich repeat
Pkinase PF00069 724 - 941 1.5e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 725 - 943 9.9e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000262)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11680 FvH4_6g11681 FvH4_6g11682 FvH4_6g11683
malus_domestica MD00G1079100.v1.1 MD00G1080000.v1.1 MD01G1100900.v1.1 MD03G1225200.v1.1 MD04G1041600.v1.1 MD04G1110500.v1.1 MD04G1118700.v1.1 MD04G1150300.v1.1 MD04G1150400.v1.1 MD04G1156000.v1.1 MD04G1156200.v1.1 MD04G1156700.v1.1 MD04G1157400.v1.1 MD04G1157500.v1.1 MD04G1157700.v1.1 MD04G1158000.v1.1 MD04G1158200.v1.1 MD04G1158600.v1.1 MD04G1159000.v1.1 MD04G1159100.v1.1 MD05G1061600.v1.1 MD05G1075800.v1.1 MD06G1129300.v1.1 MD07G1217800.v1.1 MD07G1218000.v1.1 MD07G1308700.v1.1 MD12G1130700.v1.1 MD12G1130800.v1.1 MD12G1134500.v1.1 MD12G1134700.v1.1 MD12G1135000.v1.1 MD12G1135200.v1.1 MD12G1135800.v1.1 MD12G1164300.v1.1 MD12G1164400.v1.1 MD12G1169100.v1.1 MD12G1169700.v1.1 MD12G1170200.v1.1 MD12G1170400.v1.1 MD13G1275300.v1.1
prunus_persica Prupe.1G072900_v2.0.a1 Prupe.1G194200_v2.0.a1 Prupe.1G201100_v2.0.a1 Prupe.6G248000_v2.0.a1 Prupe.6G248100_v2.0.a1 Prupe.6G248500_v2.0.a1 Prupe.6G274800_v2.0.a1 Prupe.6G274900_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.6G275100_v2.0.a1 Prupe.7G044200_v2.0.a1 Prupe.7G044300_v2.0.a1 Prupe.7G044700_v2.0.a1
pyrus_communis pycom04g03530 pycom04g10490 pycom04g10500 pycom04g10510 pycom04g10560 pycom04g13580 pycom04g13600 pycom04g14080 pycom12g10580 pycom12g11020 pycom12g12650 pycom12g12680 pycom12g15730 pycom12g15740 pycom12g16060 pycom12g16100 pycom12g16200 pycom12g16240 pycom16g21060
rosa_chinensis RchiOBHm_Chr3g0463401 RchiOBHm_Chr3g0463411 RchiOBHm_Chr3g0463481 RchiOBHm_Chr4g0408571 RchiOBHm_Chr4g0408641
rosa_laevigata RLG00000019546 RLG00000019547 RLG00000019552 RLG00000019553 RLG00000019554 RLG00000019578 RLG00000024784 RLG00000024785 RLG00000024786
rosa_multiflora Rmu_sc0000923.1_g000013 Rmu_sc0000923.1_g000017 Rmu_sc0000923.1_g000018 Rmu_sc0001053.1_g000005 Rmu_sc0001053.1_g000012 Rmu_sc0001053.1_g000013 Rmu_sc0001053.1_g000014 Rmu_sc0031971.1_g000001
rosa_roxburghii Rroxscaffold_2G00107980 Rroxscaffold_6G00416540 Rroxscaffold_6G00416560
rosa_rugosa Rorug02G0333800 Rorug02G0333900 Rorug03G0064500 Rorug03G0064600 Rorug03G0064800 Rorug03G0064900 Rorug03G0065000 Rorug03G0065000
rosa_samantha Rh2CG370900 Rh3AG122100 Rh3BG126500 Rh3BG126800 Rh3BG126900 Rh3CG128600 Rh3CG128700 Rh3DG127400 Rh3DG127500 Rh3DG127700 Rh4CG158500 Rh4CG158600
rosa_wichuraiana Rw0G010610 Rw0G010620 Rw3G010370 Rw3G010380 Rw3G010400 Rw3G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 762, 1229, 2112
AasI GACNNNNNNGTC 1 cut(s) 469
Acc36I ACCTGC 1 cut(s) 1954
AccB1I GGYRCC 1 cut(s) 2328
AccB7I CCANNNNNTGG 2 cut(s) 1433, 2887
AccBSI CCGCTC 1 cut(s) 3076
AccI GTMKAC 2 cut(s) 403, 1420
AciI CCGC 2 cut(s) 1268, 3076
AclWI GGATC 2 cut(s) 179, 1131
AcoI YGGCCR 1 cut(s) 1654
AcsI RAATTY 8 cut(s) 44, 456, 1334, 1697, 1790, 1869, 2482, 2855
AcuI CTGAAG 2 cut(s) 201, 908
AdeI CACNNNGTG 1 cut(s) 2992
AfaI GTAC 9 cut(s) 19, 412, 481, 1081, 1663, 1682, 2592, 2732, 3128
AfiI CCNNNNNNNGG 9 cut(s) 326, 721, 830, 1433, 1671, 1865, 2234, 2732, 2887
AflII CTTAAG 1 cut(s) 1814
AflIII ACRYGT 2 cut(s) 780, 2826
AhlI ACTAGT 1 cut(s) 1082
AjnI CCWGG 4 cut(s) 285, 414, 604, 967
AjuI GAANNNNNNNTTGG 4 cut(s) 1152, 1184, 1339, 1371
Alw21I GWGCWC 7 cut(s) 89, 206, 687, 1389, 1813, 2023, 2062
Alw26I GTCTC 8 cut(s) 428, 983, 1306, 1725, 1897, 2379, 2445, 3114
Alw44I GTGCAC 1 cut(s) 2019
AlwI GGATC 2 cut(s) 179, 1131
AlwNI CAGNNNCTG 1 cut(s) 968
Ama87I CYCGRG 3 cut(s) 686, 1132, 1977
AoxI GGCC 3 cut(s) 1343, 1654, 2743
ApaLI GTGCAC 1 cut(s) 2019
ApeKI GCWGC 4 cut(s) 104, 1488, 2861, 2968
ApoI RAATTY 8 cut(s) 44, 456, 1334, 1697, 1790, 1869, 2482, 2855
ArsI GACNNNNNNTTYG 6 cut(s) 1682, 1714, 2385, 2410, 2417, 2442
Asp700I GAANNNNTTC 2 cut(s) 622, 1873
AspLEI GCGC 2 cut(s) 2617, 2968
AspS9I GGNCC 2 cut(s) 283, 1343
AsuC2I CCSGG 1 cut(s) 1342
AsuHPI GGTGA 5 cut(s) 392, 1058, 1595, 3007, 3057
AvaI CYCGRG 3 cut(s) 686, 1132, 1977
AvaII GGWCC 1 cut(s) 283
BaeGI GKGCMC 1 cut(s) 2023
BaeI ACNNNNGTAYC 2 cut(s) 1802, 1835
BanI GGYRCC 1 cut(s) 2328
BanII GRGCYC 3 cut(s) 206, 687, 1389
BarI GAAGNNNNNNTAC 6 cut(s) 733, 765, 1357, 1389, 2250, 2282
BauI CACGAG 2 cut(s) 205, 2434
BbsI GAAGAC 2 cut(s) 2395, 2610
Bbv12I GWGCWC 7 cut(s) 89, 206, 687, 1389, 1813, 2023, 2062
BbvI GCAGC 4 cut(s) 116, 1500, 2873, 2955
BccI CCATC 6 cut(s) 227, 608, 1360, 1658, 2228, 2924
BceAI ACGGC 3 cut(s) 1228, 1641, 2749
BcgI CGANNNNNNTGC 2 cut(s) 2945, 2979
BciT130I CCWGG 4 cut(s) 287, 416, 606, 969
BciVI GTATCC 2 cut(s) 1937, 2775
BclI TGATCA 1 cut(s) 2665
BcnI CCSGG 1 cut(s) 1342
BcoDI GTCTC 8 cut(s) 428, 983, 1306, 1725, 1897, 2379, 2445, 3114
BcuI ACTAGT 1 cut(s) 1082
BfmI CTRYAG 3 cut(s) 102, 229, 2709
BfrI CTTAAG 1 cut(s) 1814
BfuAI ACCTGC 1 cut(s) 1954
BfuI GTATCC 2 cut(s) 1937, 2775
BisI GCNGC 4 cut(s) 105, 1489, 2862, 2969
BlsI GCNGC 4 cut(s) 106, 1490, 2863, 2970
Bme1390I CCNGG 5 cut(s) 287, 416, 606, 969, 1342
Bme18I GGWCC 1 cut(s) 283
BmeT110I CYCGRG 3 cut(s) 686, 1132, 1977
BmgT120I GGNCC 2 cut(s) 283, 1343
BmiI GGNNCC 4 cut(s) 310, 598, 2330, 2645
BmrFI CCNGG 5 cut(s) 287, 416, 606, 969, 1342
BmrI ACTGGG 2 cut(s) 1037, 2768
BmsI GCATC 6 cut(s) 843, 1603, 2452, 2666, 3024, 3069
BmuI ACTGGG 2 cut(s) 1037, 2768
BpiI GAAGAC 2 cut(s) 2395, 2610
BplI GAGNNNNNCTC 4 cut(s) 547, 579, 963, 995
BpmI CTGGAG 2 cut(s) 990, 2709
BpuEI CTTGAG 4 cut(s) 375, 1283, 2327, 2347
BpuMI CCSGG 1 cut(s) 1342
BsaAI YACGTR 2 cut(s) 17, 410
BsaJI CCNNGG 5 cut(s) 414, 604, 967, 1360, 2865
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 2733, 2763
Bsc4I CCNNNNNNNGG 9 cut(s) 326, 721, 830, 1433, 1671, 1865, 2234, 2732, 2887
Bse1I ACTGG 5 cut(s) 306, 1032, 1564, 1665, 2763
Bse3DI GCAATG 4 cut(s) 243, 1565, 2593, 2906
BseBI CCWGG 4 cut(s) 287, 416, 606, 969
BseDI CCNNGG 5 cut(s) 414, 604, 967, 1360, 2865
BseGI GGATG 6 cut(s) 219, 600, 2004, 2443, 2896, 3084
BseLI CCNNNNNNNGG 9 cut(s) 326, 721, 830, 1433, 1671, 1865, 2234, 2732, 2887
BseMI GCAATG 4 cut(s) 243, 1565, 2593, 2906
BseMII CTCAG 6 cut(s) 205, 556, 604, 1730, 1908, 2689
BseNI ACTGG 5 cut(s) 306, 1032, 1564, 1665, 2763
BseRI GAGGAG 2 cut(s) 2471, 2903
BseSI GKGCMC 1 cut(s) 2023
BseX3I CGGCCG 1 cut(s) 1654
BseXI GCAGC 4 cut(s) 116, 1500, 2873, 2955
BseYI CCCAGC 2 cut(s) 113, 1643
BsgI GTGCAG 1 cut(s) 3078
Bsh1285I CGRYCG 1 cut(s) 1657
BshFI GGCC 3 cut(s) 1345, 1656, 2745
BshNI GGYRCC 1 cut(s) 2328
BsiEI CGRYCG 1 cut(s) 1657
BsiHKAI GWGCWC 7 cut(s) 89, 206, 687, 1389, 1813, 2023, 2062
BsiHKCI CYCGRG 3 cut(s) 686, 1132, 1977
BsiSI CCGG 2 cut(s) 32, 1341
BslFI GGGAC 5 cut(s) 457, 950, 973, 1262, 2639
BslI CCNNNNNNNGG 9 cut(s) 326, 721, 830, 1433, 1671, 1865, 2234, 2732, 2887
BsmAI GTCTC 8 cut(s) 428, 983, 1306, 1725, 1897, 2379, 2445, 3114
BsmBI CGTCTC 1 cut(s) 2445
BsmFI GGGAC 5 cut(s) 457, 950, 973, 1262, 2639
BsmI GAATGC 5 cut(s) 10, 1330, 2027, 2309, 3023
BsnI GGCC 3 cut(s) 1345, 1656, 2745
BsoBI CYCGRG 3 cut(s) 686, 1132, 1977
Bsp1286I GDGCHC 7 cut(s) 89, 206, 687, 1389, 1813, 2023, 2062
Bsp143I GATC 9 cut(s) 142, 184, 499, 586, 1136, 1240, 2346, 2572, 2665
Bsp19I CCATGG 1 cut(s) 2865
BspACI CCGC 2 cut(s) 1268, 3076
BspANI GGCC 3 cut(s) 1345, 1656, 2745
BspCNI CTCAG 6 cut(s) 204, 555, 603, 1729, 1907, 2688
BspHI TCATGA 1 cut(s) 198
BspLI GGNNCC 4 cut(s) 310, 598, 2330, 2645
BspMAI CTGCAG 2 cut(s) 106, 233
BspMI ACCTGC 1 cut(s) 1954
BspPI GGATC 2 cut(s) 179, 1131
BspT107I GGYRCC 1 cut(s) 2328
BspTI CTTAAG 1 cut(s) 1814
BsrBI CCGCTC 1 cut(s) 3076
BsrDI GCAATG 4 cut(s) 243, 1565, 2593, 2906
BsrI ACTGG 5 cut(s) 306, 1032, 1564, 1665, 2763
BssECI CCNNGG 5 cut(s) 414, 604, 967, 1360, 2865
BssMI GATC 9 cut(s) 142, 184, 499, 586, 1136, 1240, 2346, 2572, 2665
BssNAI GTATAC 1 cut(s) 1421
BssSI CACGAG 2 cut(s) 205, 2434
BssT1I CCWWGG 2 cut(s) 1360, 2865
Bst1107I GTATAC 1 cut(s) 1421
Bst2BI CACGAG 2 cut(s) 205, 2434
Bst2UI CCWGG 4 cut(s) 287, 416, 606, 969
Bst4CI ACNGT 6 cut(s) 257, 479, 964, 1603, 2165, 2242
Bst6I CTCTTC 2 cut(s) 570, 1304
BstAFI CTTAAG 1 cut(s) 1814
BstAPI GCANNNNNTGC 1 cut(s) 249
BstBAI YACGTR 2 cut(s) 17, 410
BstC8I GCNNGC 5 cut(s) 250, 989, 1802, 1951, 2359
BstDEI CTNAG 9 cut(s) 191, 488, 542, 590, 1716, 1894, 2286, 2675, 2843
BstDSI CCRYGG 1 cut(s) 2865
BstENI CCTNNNNNAGG 1 cut(s) 1863
BstF5I GGATG 6 cut(s) 219, 600, 2004, 2443, 2896, 3084
BstHHI GCGC 2 cut(s) 2617, 2968
BstKTI GATC 9 cut(s) 145, 187, 502, 589, 1139, 1243, 2349, 2575, 2668
BstMAI GTCTC 8 cut(s) 428, 983, 1306, 1725, 1897, 2379, 2445, 3114
BstMBI GATC 9 cut(s) 142, 184, 499, 586, 1136, 1240, 2346, 2572, 2665
BstMCI CGRYCG 1 cut(s) 1657
BstMWI GCNNNNNNNGC 7 cut(s) 84, 249, 993, 1325, 1653, 2742, 2867
BstNI CCWGG 4 cut(s) 287, 416, 606, 969
BstNSI RCATGY 6 cut(s) 252, 784, 1953, 2361, 2621, 2830
BstSCI CCNGG 5 cut(s) 285, 414, 604, 967, 1340
BstSFI CTRYAG 3 cut(s) 102, 229, 2709
BstSLI GKGCMC 1 cut(s) 2023
BstSNI TACGTA 1 cut(s) 410
BstV1I GCAGC 4 cut(s) 116, 1500, 2873, 2955
BstV2I GAAGAC 2 cut(s) 2395, 2610
BstX2I RGATCY 2 cut(s) 184, 1136
BstXI CCANNNNNNTGG 1 cut(s) 809
BstYI RGATCY 2 cut(s) 184, 1136
BstZ17I GTATAC 1 cut(s) 1421
BstZI CGGCCG 1 cut(s) 1654
BsuI GTATCC 2 cut(s) 1937, 2775
BsuRI GGCC 3 cut(s) 1345, 1656, 2745
BtgI CCRYGG 1 cut(s) 2865
BtgZI GCGATG 2 cut(s) 2247, 2676
BtsCI GGATG 6 cut(s) 219, 600, 2004, 2443, 2896, 3084
BtsIMutI CAGTG 5 cut(s) 199, 475, 598, 1608, 1891
BveI ACCTGC 1 cut(s) 1954
Cac8I GCNNGC 5 cut(s) 250, 989, 1802, 1951, 2359
CaiI CAGNNNCTG 1 cut(s) 968
CciI TCATGA 1 cut(s) 198
CfoI GCGC 2 cut(s) 2617, 2968
Cfr13I GGNCC 2 cut(s) 283, 1343
CseI GACGC 1 cut(s) 2271
Csp6I GTAC 9 cut(s) 18, 411, 480, 1080, 1662, 1681, 2591, 2731, 3127
CspCI CAANNNNNGTGG 4 cut(s) 1560, 1595, 2528, 2563
CviQI GTAC 9 cut(s) 18, 411, 480, 1080, 1662, 1681, 2591, 2731, 3127
DdeI CTNAG 9 cut(s) 191, 488, 542, 590, 1716, 1894, 2286, 2675, 2843
DpnI GATC 9 cut(s) 144, 186, 501, 588, 1138, 1242, 2348, 2574, 2667
DpnII GATC 9 cut(s) 142, 184, 499, 586, 1136, 1240, 2346, 2572, 2665
DraI TTTAAA 2 cut(s) 1734, 2215
DraIII CACNNNGTG 1 cut(s) 2992
DrdI GACNNNNNNGTC 1 cut(s) 469
DseDI GACNNNNNNGTC 1 cut(s) 469
EaeI YGGCCR 1 cut(s) 1654
EagI CGGCCG 1 cut(s) 1654
Eam1104I CTCTTC 2 cut(s) 570, 1304
EarI CTCTTC 2 cut(s) 570, 1304
Ecl136II GAGCTC 3 cut(s) 204, 685, 1387
EclXI CGGCCG 1 cut(s) 1654
Eco105I TACGTA 1 cut(s) 410
Eco130I CCWWGG 2 cut(s) 1360, 2865
Eco24I GRGCYC 3 cut(s) 206, 687, 1389
Eco47I GGWCC 1 cut(s) 283
Eco52I CGGCCG 1 cut(s) 1654
Eco53kI GAGCTC 3 cut(s) 204, 685, 1387
Eco57I CTGAAG 2 cut(s) 201, 908
Eco88I CYCGRG 3 cut(s) 686, 1132, 1977
EcoICRI GAGCTC 3 cut(s) 204, 685, 1387
EcoNI CCTNNNNNAGG 1 cut(s) 1863
EcoRI GAATTC 1 cut(s) 1790
EcoRII CCWGG 4 cut(s) 285, 414, 604, 967
EcoT14I CCWWGG 2 cut(s) 1360, 2865
EcoT22I ATGCAT 1 cut(s) 80
EcoT38I GRGCYC 3 cut(s) 206, 687, 1389
ErhI CCWWGG 2 cut(s) 1360, 2865
Esp3I CGTCTC 1 cut(s) 2445
FaqI GGGAC 5 cut(s) 457, 950, 973, 1262, 2639
FauI CCCGC 1 cut(s) 1261
FbaI TGATCA 1 cut(s) 2665
FblI GTMKAC 2 cut(s) 403, 1420
Fnu4HI GCNGC 4 cut(s) 105, 1489, 2862, 2969
FokI GGATG 6 cut(s) 206, 587, 1991, 2430, 2903, 3091
FriOI GRGCYC 3 cut(s) 206, 687, 1389
Fsp4HI GCNGC 4 cut(s) 105, 1489, 2862, 2969
GlaI GCGC 2 cut(s) 2616, 2967
GluI GCNGC 4 cut(s) 105, 1489, 2862, 2969
GsaI CCCAGC 2 cut(s) 117, 1647
GsuI CTGGAG 2 cut(s) 990, 2709
HaeIII GGCC 3 cut(s) 1345, 1656, 2745
HapII CCGG 2 cut(s) 32, 1341
HgaI GACGC 1 cut(s) 2271
HhaI GCGC 2 cut(s) 2617, 2968
Hin6I GCGC 2 cut(s) 2615, 2966
HinP1I GCGC 2 cut(s) 2615, 2966
HincII GTYRAC 3 cut(s) 404, 2899, 2941
HindII GTYRAC 3 cut(s) 404, 2899, 2941
HindIII AAGCTT 6 cut(s) 355, 985, 994, 1502, 1802, 2310
HpaI GTTAAC 1 cut(s) 2941
HpaII CCGG 2 cut(s) 32, 1341
HphI GGTGA 5 cut(s) 392, 1058, 1595, 3007, 3057
Hpy166II GTNNAC 6 cut(s) 404, 1421, 2021, 2802, 2899, 2941
Hpy188I TCNGA 6 cut(s) 97, 142, 462, 927, 983, 3101
Hpy8I GTNNAC 6 cut(s) 404, 1421, 2021, 2802, 2899, 2941
HpyAV CCTTC 9 cut(s) 330, 759, 1697, 1841, 1859, 2276, 2831, 2913, 3137
HpyCH4III ACNGT 6 cut(s) 257, 479, 964, 1603, 2165, 2242
HpyCH4IV ACGT 5 cut(s) 16, 409, 2104, 2555, 2977
HpyF10VI GCNNNNNNNGC 7 cut(s) 84, 249, 993, 1325, 1653, 2742, 2867
HpyF3I CTNAG 9 cut(s) 191, 488, 542, 590, 1716, 1894, 2286, 2675, 2843
HpySE526I ACGT 5 cut(s) 16, 409, 2104, 2555, 2977
HspAI GCGC 2 cut(s) 2615, 2966
Ksp22I TGATCA 1 cut(s) 2665
KspAI GTTAAC 1 cut(s) 2941
Kzo9I GATC 9 cut(s) 142, 184, 499, 586, 1136, 1240, 2346, 2572, 2665
LmnI GCTCC 6 cut(s) 7, 314, 750, 2279, 2458, 2916
Lsp1109I GCAGC 4 cut(s) 116, 1500, 2873, 2955
LweI GCATC 6 cut(s) 843, 1603, 2452, 2666, 3024, 3069
MaeII ACGT 5 cut(s) 16, 409, 2104, 2555, 2977
MaeIII GTNAC 4 cut(s) 1191, 2095, 2714, 2978
MalI GATC 9 cut(s) 144, 186, 501, 588, 1138, 1242, 2348, 2574, 2667
MbiI CCGCTC 1 cut(s) 3076
MboI GATC 9 cut(s) 142, 184, 499, 586, 1136, 1240, 2346, 2572, 2665
MflI RGATCY 2 cut(s) 184, 1136
MhlI GDGCHC 7 cut(s) 89, 206, 687, 1389, 1813, 2023, 2062
MlyI GAGTC 5 cut(s) 279, 556, 2426, 3039, 3116
MmeI TCCRAC 3 cut(s) 485, 590, 3079
Mph1103I ATGCAT 1 cut(s) 80
MroXI GAANNNNTTC 2 cut(s) 622, 1873
MslI CAYNNNNRTG 1 cut(s) 779
MspCI CTTAAG 1 cut(s) 1814
MspI CCGG 2 cut(s) 32, 1341
MspR9I CCNGG 5 cut(s) 287, 416, 606, 969, 1342
Mva1269I GAATGC 5 cut(s) 10, 1330, 2027, 2309, 3023
MvaI CCWGG 4 cut(s) 287, 416, 606, 969
MwoI GCNNNNNNNGC 7 cut(s) 84, 249, 993, 1325, 1653, 2742, 2867
NciI CCSGG 1 cut(s) 1342
NcoI CCATGG 1 cut(s) 2865
NdeII GATC 9 cut(s) 142, 184, 499, 586, 1136, 1240, 2346, 2572, 2665
NlaIV GGNNCC 4 cut(s) 310, 598, 2330, 2645
NmeAIII GCCGAG 2 cut(s) 810, 2607
NsiI ATGCAT 1 cut(s) 80
NspI RCATGY 6 cut(s) 252, 784, 1953, 2361, 2621, 2830
PaeI GCATGC 3 cut(s) 252, 1953, 2361
PaeR7I CTCGAG 1 cut(s) 1977
PagI TCATGA 1 cut(s) 198
PciI ACATGT 2 cut(s) 780, 2826
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PctI GAATGC 5 cut(s) 10, 1330, 2027, 2309, 3023
PdmI GAANNNNTTC 2 cut(s) 622, 1873
PfeI GAWTC 7 cut(s) 98, 137, 211, 277, 363, 529, 1783
PflFI GACNNNGTC 1 cut(s) 2882
PflMI CCANNNNNTGG 2 cut(s) 1433, 2887
PkrI GCNGC 4 cut(s) 106, 1490, 2863, 2970
PleI GAGTC 5 cut(s) 278, 556, 2426, 3039, 3116
PpsI GAGTC 5 cut(s) 278, 556, 2426, 3039, 3116
Ppu21I YACGTR 2 cut(s) 17, 410
PscI ACATGT 2 cut(s) 780, 2826
PsiI TTATAA 3 cut(s) 762, 1229, 2112
Psp124BI GAGCTC 3 cut(s) 206, 687, 1389
Psp6I CCWGG 4 cut(s) 285, 414, 604, 967
PspFI CCCAGC 2 cut(s) 113, 1643
PspGI CCWGG 4 cut(s) 285, 414, 604, 967
PspN4I GGNNCC 4 cut(s) 310, 598, 2330, 2645
PspPI GGNCC 2 cut(s) 283, 1343
PstI CTGCAG 2 cut(s) 106, 233
PstNI CAGNNNCTG 1 cut(s) 968
PsuI RGATCY 2 cut(s) 184, 1136
PsyI GACNNNGTC 1 cut(s) 2882
RsaI GTAC 9 cut(s) 19, 412, 481, 1081, 1663, 1682, 2592, 2732, 3128
RsaNI GTAC 9 cut(s) 18, 411, 480, 1080, 1662, 1681, 2591, 2731, 3127
RseI CAYNNNNRTG 1 cut(s) 779
SacI GAGCTC 3 cut(s) 206, 687, 1389
SalI GTCGAC 1 cut(s) 402
SatI GCNGC 4 cut(s) 105, 1489, 2862, 2969
Sau3AI GATC 9 cut(s) 142, 184, 499, 586, 1136, 1240, 2346, 2572, 2665
Sau96I GGNCC 2 cut(s) 283, 1343
SchI GAGTC 5 cut(s) 279, 556, 2426, 3039, 3116
ScrFI CCNGG 5 cut(s) 287, 416, 606, 969, 1342
SduI GDGCHC 7 cut(s) 89, 206, 687, 1389, 1813, 2023, 2062
SfaNI GCATC 6 cut(s) 843, 1603, 2452, 2666, 3024, 3069
SfcI CTRYAG 3 cut(s) 102, 229, 2709
Sfr274I CTCGAG 1 cut(s) 1977
SinI GGWCC 1 cut(s) 283
SlaI CTCGAG 1 cut(s) 1977
SmiMI CAYNNNNRTG 1 cut(s) 779
SmlI CTYRAG 6 cut(s) 390, 1298, 1814, 1977, 2342, 2362
SmoI CTYRAG 6 cut(s) 390, 1298, 1814, 1977, 2342, 2362
SnaBI TACGTA 1 cut(s) 410
SpeI ACTAGT 1 cut(s) 1082
SphI GCATGC 3 cut(s) 252, 1953, 2361
SsiI CCGC 2 cut(s) 1268, 3076
SspI AATATT 2 cut(s) 766, 892
SstI GAGCTC 3 cut(s) 206, 687, 1389
StyD4I CCNGG 5 cut(s) 285, 414, 604, 967, 1340
StyI CCWWGG 2 cut(s) 1360, 2865
TaaI ACNGT 6 cut(s) 257, 479, 964, 1603, 2165, 2242
TaiI ACGT 5 cut(s) 19, 412, 2107, 2558, 2980
TatI WGTACW 4 cut(s) 479, 1079, 1680, 2590
TfiI GAWTC 7 cut(s) 98, 137, 211, 277, 363, 529, 1783
TscAI CASTG 5 cut(s) 199, 482, 598, 1608, 1891
TseI GCWGC 4 cut(s) 104, 1488, 2861, 2968
TspGWI ACGGA 1 cut(s) 1413
TspRI CASTG 5 cut(s) 199, 482, 598, 1608, 1891
Tth111I GACNNNGTC 1 cut(s) 2882
Van91I CCANNNNNTGG 2 cut(s) 1433, 2887
Vha464I CTTAAG 1 cut(s) 1814
VneI GTGCAC 1 cut(s) 2019
VpaK11BI GGWCC 1 cut(s) 283
XagI CCTNNNNNAGG 1 cut(s) 1863
XapI RAATTY 8 cut(s) 44, 456, 1334, 1697, 1790, 1869, 2482, 2855
XbaI TCTAGA 2 cut(s) 917, 1243
XceI RCATGY 6 cut(s) 252, 784, 1953, 2361, 2621, 2830
XhoI CTCGAG 1 cut(s) 1977
XmiI GTMKAC 2 cut(s) 403, 1420
XmnI GAANNNNTTC 2 cut(s) 622, 1873
Zsp2I ATGCAT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.